BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781150|ref|YP_003065563.1| hypothetical protein
CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62]
         (33 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040827|gb|ACT57623.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 33

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1  MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW 33
          MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW
Sbjct: 1  MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW 33


>gi|315122540|ref|YP_004063029.1| replicative DNA helicase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495942|gb|ADR52541.1| replicative DNA helicase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 475

 Score = 68.1 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/32 (90%), Positives = 31/32 (96%)

Query: 1   MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32
           MDFI+AKQRNGPIESVSLF DMPYS+IKDGKE
Sbjct: 444 MDFIIAKQRNGPIESVSLFADMPYSIIKDGKE 475


>gi|157803634|ref|YP_001492183.1| replicative DNA helicase [Rickettsia canadensis str. McKiel]
 gi|157784897|gb|ABV73398.1| replicative DNA helicase [Rickettsia canadensis str. McKiel]
          Length = 494

 Score = 36.1 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 2   DFIVAKQRNGPIESVSLFVDMPYS 25
           D IVAK RNGPI +VSL+ D  YS
Sbjct: 458 DIIVAKHRNGPIGNVSLYYDSQYS 481


>gi|225630226|ref|YP_002727017.1| replicative DNA helicase [Wolbachia sp. wRi]
 gi|225592207|gb|ACN95226.1| replicative DNA helicase [Wolbachia sp. wRi]
          Length = 483

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 2   DFIVAKQRNGPIESVSLFVDMPYSVIKDGKE 32
           + I+AKQRNGPI SV L+ D      KD  E
Sbjct: 449 ELIIAKQRNGPIGSVKLYFDSNRGAFKDYTE 479


>gi|58584557|ref|YP_198130.1| replicative DNA helicase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|256051414|ref|XP_002569553.1| Replicative DNA helicase [Schistosoma mansoni]
 gi|58418873|gb|AAW70888.1| Replicative DNA helicase, DnaB [Wolbachia endosymbiont strain TRS
           of Brugia malayi]
 gi|227283564|emb|CAY18524.1| Replicative DNA helicase, putative [Schistosoma mansoni]
          Length = 483

 Score = 34.6 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 2   DFIVAKQRNGPIESVSLFVDMPYSVIKD 29
           + I+AKQRNGPI SV L+ D      KD
Sbjct: 449 ELIIAKQRNGPIGSVKLYFDSNQGAFKD 476


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.320    0.138    0.421 

Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,029,131
Number of Sequences: 14124377
Number of extensions: 5547739
Number of successful extensions: 10835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10830
Number of HSP's gapped (non-prelim): 5
length of query: 33
length of database: 4,842,793,630
effective HSP length: 8
effective length of query: 25
effective length of database: 4,729,798,614
effective search space: 118244965350
effective search space used: 118244965350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.8 bits)