RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781150|ref|YP_003065563.1| hypothetical protein
CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62]
         (33 letters)



>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A
           {Bacillus phage SPP1}
          Length = 315

 Score = 30.3 bits (67), Expect = 0.12
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 1   MDFIVAKQRNGPIESVSLFVDMPYSVIKD 29
           ++ I+AK R+GP+ +VSL     Y    +
Sbjct: 279 VEVIIAKHRDGPVGTVSLAFIKEYGNFVN 307


>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A
           {Bacillus phage SPP1}
          Length = 444

 Score = 30.0 bits (66), Expect = 0.14
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 1   MDFIVAKQRNGPIESVSLFVDMPYSVIKD 29
           ++ I+AK R+GP+ +VSL     Y    +
Sbjct: 408 VEVIIAKHRDGPVGTVSLAFIKEYGNFVN 436


>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A
           {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A
           2r6e_A 2vyf_A 2vye_A
          Length = 454

 Score = 29.5 bits (65), Expect = 0.18
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 1   MDFIVAKQRNGPIESVSLFVDMPYSVIKD 29
           ++ I+AKQRNGP+ +V L     Y+   +
Sbjct: 412 IEIIIAKQRNGPVGTVQLAFIKEYNKFVN 440


>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus
           aquaticus}
          Length = 444

 Score = 29.1 bits (64), Expect = 0.26
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 1   MDFIVAKQRNGPIESVSLFVDMPYSVIKD 29
            + IV KQRNGP  +V L     +    D
Sbjct: 411 AEIIVGKQRNGPTGTVELQFHASHVRFND 439


>2i5i_A UPF0249 protein EF_3048; hypothetical protein, structural
          genomics, joint center for structural genomics, JCSG;
          HET: MSE; 1.70A {Enterococcus faecalis V583} SCOP:
          c.6.2.8
          Length = 263

 Score = 23.9 bits (51), Expect = 8.8
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 9  RNGPIESVSLFVDMPY 24
          + G + S +     PY
Sbjct: 29 KRGVVTSTTALPTSPY 44


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 276,702
Number of extensions: 5631
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 6
Length of query: 33
Length of database: 5,693,230
Length adjustment: 7
Effective length of query: 26
Effective length of database: 5,523,522
Effective search space: 143611572
Effective search space used: 143611572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)