RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781150|ref|YP_003065563.1| hypothetical protein
CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62]
         (33 letters)



>d2i5ia1 c.6.2.8 (A:2-262) Uncharacterized protein EF3048
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 261

 Score = 24.3 bits (52), Expect = 3.3
 Identities = 4/16 (25%), Positives = 7/16 (43%)

Query: 9  RNGPIESVSLFVDMPY 24
          + G + S +     PY
Sbjct: 27 KRGVVTSTTALPTSPY 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 120,300
Number of extensions: 2503
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 33
Length of database: 2,407,596
Length adjustment: 7
Effective length of query: 26
Effective length of database: 2,311,486
Effective search space: 60098636
Effective search space used: 60098636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)