BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781150|ref|YP_003065563.1| hypothetical protein
CLIBASIA_05285 [Candidatus Liberibacter asiaticus str. psy62]
         (33 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781150|ref|YP_003065563.1| hypothetical protein CLIBASIA_05285 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 33

 Score = 70.5 bits (171), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1  MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW 33
          MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW
Sbjct: 1  MDFIVAKQRNGPIESVSLFVDMPYSVIKDGKEW 33


>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 504

 Score = 26.6 bits (57), Expect = 0.090,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 2   DFIVAKQRNGPIESVSL 18
           D I+AKQR+GP  +V+L
Sbjct: 462 DIIIAKQRHGPTGTVTL 478


>gi|254780246|ref|YP_003064659.1| 50S ribosomal protein L6 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 177

 Score = 23.1 bits (48), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 12  PIESVSLFVDMPYSVIKDG 30
           P+E +S+FV  P  +I  G
Sbjct: 117 PLEGISIFVSKPTEIIVSG 135


>gi|254780752|ref|YP_003065165.1| penicillin binding peptidoglycan synthetase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 817

 Score = 20.0 bits (40), Expect = 7.3,   Method: Composition-based stats.
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 17  SLFVDMPYSVIKDGKEW 33
           S+ +D P  V+  GK W
Sbjct: 498 SVIMDAPIEVVSRGKIW 514


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,721
Number of Sequences: 1233
Number of extensions: 350
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 33
length of database: 328,796
effective HSP length: 7
effective length of query: 26
effective length of database: 320,165
effective search space:  8324290
effective search space used:  8324290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)