Query gi|254781151|ref|YP_003065564.1| hypothetical protein CLIBASIA_05290 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:30:29 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781151.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qb5d_ b.40.2.1 (D:) Heat-lab 11.7 44 0.0032 15.0 1.4 15 9-23 53-67 (99)
2 d1t62a_ b.122.1.4 (A:) Hypothe 6.1 95 0.0069 13.2 1.2 13 23-35 64-76 (166)
3 d1iqpa2 c.37.1.20 (A:2-232) Re 4.1 89 0.0065 13.4 0.0 12 4-15 11-23 (231)
4 d3bi1a1 a.48.2.1 (A:594-750) G 3.7 1.1E+02 0.0077 13.0 0.1 21 3-23 89-119 (157)
5 d2zkda1 b.122.1.12 (A:405-613) 3.6 1.5E+02 0.011 12.1 0.9 10 25-34 54-63 (209)
6 d1nekb2 d.15.4.2 (B:1-106) Suc 3.5 79 0.0058 13.6 -0.7 18 21-38 88-105 (106)
7 d2bs2b2 d.15.4.2 (B:1-106) Fum 3.2 93 0.0068 13.3 -0.6 18 21-38 88-105 (106)
8 d1j7na2 d.92.1.14 (A:551-773) 3.0 1.9E+02 0.014 11.6 2.9 27 7-33 56-82 (223)
9 d1xwya1 c.1.9.12 (A:1-260) Deo 2.7 2E+02 0.015 11.5 0.8 23 4-26 221-243 (260)
10 d1wc9a_ d.278.1.2 (A:) Traffic 2.5 2.2E+02 0.016 11.4 0.8 15 7-21 115-129 (161)
No 1
>d1qb5d_ b.40.2.1 (D:) Heat-labile toxin {Escherichia coli, type IIB [TaxId: 562]}
Probab=11.66 E-value=44 Score=14.97 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=11.6
Q ss_pred HHCCHHHHHHHHHHH
Q ss_conf 217276875567654
Q gi|254781151|r 9 KRYPANFISGILELT 23 (38)
Q Consensus 9 krypanfisgilelt 23 (38)
|.||.||.||-..-+
T Consensus 53 ~dypdn~~s~e~rk~ 67 (99)
T d1qb5d_ 53 KDYPDNVMTAEMRKI 67 (99)
T ss_dssp SSTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 879702555899999
No 2
>d1t62a_ b.122.1.4 (A:) Hypothetical protein EF3133 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.07 E-value=95 Score=13.24 Aligned_cols=13 Identities=54% Similarity=0.922 Sum_probs=9.9
Q ss_pred HHHCCCCEEEEEE
Q ss_conf 4002484366565
Q gi|254781151|r 23 TLEQKGAYSIILD 35 (38)
Q Consensus 23 tleqkgaysiild 35 (38)
.+.+.|.|+||||
T Consensus 64 ~lP~vG~~~IvlD 76 (166)
T d1t62a_ 64 QLPKAGQYDIILD 76 (166)
T ss_dssp CCCCTTCEEEEEC
T ss_pred CCCCCCCEEEEEC
T ss_conf 8999888789985
No 3
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.12 E-value=89 Score=13.37 Aligned_cols=12 Identities=33% Similarity=1.268 Sum_probs=7.5
Q ss_pred CCCHHHHC-CHHH
Q ss_conf 88003217-2768
Q gi|254781151|r 4 NRPWYKRY-PANF 15 (38)
Q Consensus 4 nrpwykry-panf 15 (38)
.+||..+| |.+|
T Consensus 11 ~~~w~~ky~P~~~ 23 (231)
T d1iqpa2 11 EKPWVEKYRPQRL 23 (231)
T ss_dssp TSCHHHHTCCCST
T ss_pred HCHHHHHHCCCCH
T ss_conf 2437897589989
No 4
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.73 E-value=1.1e+02 Score=13.00 Aligned_cols=21 Identities=29% Similarity=0.749 Sum_probs=11.8
Q ss_pred CCCCHHHH----------CCHHHHHHHHHHH
Q ss_conf 88800321----------7276875567654
Q gi|254781151|r 3 NNRPWYKR----------YPANFISGILELT 23 (38)
Q Consensus 3 nnrpwykr----------ypanfisgilelt 23 (38)
.+|||||. |......||.|.-
T Consensus 89 pgR~~~kHvi~aP~~~~~y~~~~FPgi~dAi 119 (157)
T d3bi1a1 89 PDRPFYRHVIYAPSSHNKYAGESFPGIYDAL 119 (157)
T ss_dssp TTBTTCCBSSEEEETTEEEEEEESHHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf 9997531012589999875352466699999
No 5
>d2zkda1 b.122.1.12 (A:405-613) E3 ubiquitin-protein ligase UHRF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.64 E-value=1.5e+02 Score=12.15 Aligned_cols=10 Identities=50% Similarity=1.009 Sum_probs=6.8
Q ss_pred HCCCCEEEEE
Q ss_conf 0248436656
Q gi|254781151|r 25 EQKGAYSIIL 34 (38)
Q Consensus 25 eqkgaysiil 34 (38)
+..||+||++
T Consensus 54 ~~~GA~SIV~ 63 (209)
T d2zkda1 54 SNDGAYSLVL 63 (209)
T ss_dssp TTTEEEEEEE
T ss_pred CCCCEEEEEE
T ss_conf 8786699997
No 6
>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.55 E-value=79 Score=13.65 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=8.4
Q ss_pred HHHHHCCCCEEEEEEEEC
Q ss_conf 654002484366565409
Q gi|254781151|r 21 ELTLEQKGAYSIILDLIV 38 (38)
Q Consensus 21 eltleqkgaysiildliv 38 (38)
++++|--..+.+|-||+|
T Consensus 88 ~i~IePL~~~pvikDLvV 105 (106)
T d1nekb2 88 KIVIRPLPGLPVIRDLVV 105 (106)
T ss_dssp CEEEECCSSSBEEETTEE
T ss_pred EEEEEECCCCCCCCCCCC
T ss_conf 699987999985420883
No 7
>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}
Probab=3.23 E-value=93 Score=13.29 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=12.6
Q ss_pred HHHHHCCCCEEEEEEEEC
Q ss_conf 654002484366565409
Q gi|254781151|r 21 ELTLEQKGAYSIILDLIV 38 (38)
Q Consensus 21 eltleqkgaysiildliv 38 (38)
++++|--.++.+|-||+|
T Consensus 88 ~i~iePl~~~pVIkDLvV 105 (106)
T d2bs2b2 88 VITLLPLPAFKLIKDLSV 105 (106)
T ss_dssp EEEEECCTTSEEEETTEE
T ss_pred EEEEEECCCCCCCCCCCC
T ss_conf 289978999982501873
No 8
>d1j7na2 d.92.1.14 (A:551-773) Anthrax toxin lethal factor, N- and C-terminal domains {Bacillus anthracis [TaxId: 1392]}
Probab=2.98 E-value=1.9e+02 Score=11.65 Aligned_cols=27 Identities=11% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 032172768755676540024843665
Q gi|254781151|r 7 WYKRYPANFISGILELTLEQKGAYSII 33 (38)
Q Consensus 7 wykrypanfisgileltleqkgaysii 33 (38)
|-+.-|.+.+-.++|..+++.|+..|.
T Consensus 56 l~~~ip~~ll~~~~~~m~~~~~~i~it 82 (223)
T d1j7na2 56 WKNNIQSDLIKKVTNYLVDGNGRFVFT 82 (223)
T ss_dssp HHHHSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 985087889999999984778857995
No 9
>d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]}
Probab=2.75 E-value=2e+02 Score=11.50 Aligned_cols=23 Identities=13% Similarity=-0.190 Sum_probs=0.0
Q ss_pred CCCHHHHCCHHHHHHHHHHHHHC
Q ss_conf 88003217276875567654002
Q gi|254781151|r 4 NRPWYKRYPANFISGILELTLEQ 26 (38)
Q Consensus 4 nrpwykrypanfisgileltleq 26 (38)
|.|++-.+-+..++.+..++.|.
T Consensus 221 NeP~~l~~v~~~lA~~~g~~~~e 243 (260)
T d1xwya1 221 NEPAHLPHILQRIAHWRGEDAAW 243 (260)
T ss_dssp CCGGGHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 87699999999999886959999
No 10
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.55 E-value=2.2e+02 Score=11.36 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHCCHHHHHHHHH
Q ss_conf 032172768755676
Q gi|254781151|r 7 WYKRYPANFISGILE 21 (38)
Q Consensus 7 wykrypanfisgile 21 (38)
||--+++..|-|+|+
T Consensus 115 ~y~~f~cGiIrGaL~ 129 (161)
T d1wc9a_ 115 IYSNLLCGVLRGALE 129 (161)
T ss_dssp CTTTHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHH
T ss_conf 441248999999998
Done!