BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781151|ref|YP_003065564.1| hypothetical protein
CLIBASIA_05290 [Candidatus Liberibacter asiaticus str. psy62]
(38 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781151|ref|YP_003065564.1| hypothetical protein CLIBASIA_05290 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040828|gb|ACT57624.1| hypothetical protein CLIBASIA_05290 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 38
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/38 (100%), Positives = 38/38 (100%)
Query: 1 MVNNRPWYKRYPANFISGILELTLEQKGAYSIILDLIV 38
MVNNRPWYKRYPANFISGILELTLEQKGAYSIILDLIV
Sbjct: 1 MVNNRPWYKRYPANFISGILELTLEQKGAYSIILDLIV 38
>gi|315122541|ref|YP_004063030.1| hypothetical protein CKC_03965 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495943|gb|ADR52542.1| hypothetical protein CKC_03965 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 223
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 36/36 (100%)
Query: 2 VNNRPWYKRYPANFISGILELTLEQKGAYSIILDLI 37
+NNRPWYKRYPA+FISG+LELTLEQKGAYSII+DL+
Sbjct: 1 MNNRPWYKRYPADFISGVLELTLEQKGAYSIIIDLM 36
>gi|18071243|ref|NP_542309.1| hypothetical protein PBC5p49 [Sinorhizobium phage PBC5]
gi|17940349|gb|AAL49593.1|AF448724_30 unknown [Sinorhizobium phage PBC5]
Length = 217
Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 6 PWYKRYPANFISGILELTLEQKGAYSIILDLI 37
P+++RY + + G LTLEQ+GAY+ ILDLI
Sbjct: 7 PYHRRYHGDALQGYRRLTLEQRGAYTTILDLI 38
Searching..................................................done
Results from round 2
CONVERGED!
>gi|315122541|ref|YP_004063030.1| hypothetical protein CKC_03965 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495943|gb|ADR52542.1| hypothetical protein CKC_03965 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 223
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/36 (86%), Positives = 36/36 (100%)
Query: 2 VNNRPWYKRYPANFISGILELTLEQKGAYSIILDLI 37
+NNRPWYKRYPA+FISG+LELTLEQKGAYSII+DL+
Sbjct: 1 MNNRPWYKRYPADFISGVLELTLEQKGAYSIIIDLM 36
>gi|254781151|ref|YP_003065564.1| hypothetical protein CLIBASIA_05290 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040828|gb|ACT57624.1| hypothetical protein CLIBASIA_05290 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 38
Score = 71.1 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/38 (100%), Positives = 38/38 (100%)
Query: 1 MVNNRPWYKRYPANFISGILELTLEQKGAYSIILDLIV 38
MVNNRPWYKRYPANFISGILELTLEQKGAYSIILDLIV
Sbjct: 1 MVNNRPWYKRYPANFISGILELTLEQKGAYSIILDLIV 38
>gi|18071243|ref|NP_542309.1| hypothetical protein PBC5p49 [Sinorhizobium phage PBC5]
gi|17940349|gb|AAL49593.1|AF448724_30 unknown [Sinorhizobium phage PBC5]
Length = 217
Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 6 PWYKRYPANFISGILELTLEQKGAYSIILDLI 37
P+++RY + + G LTLEQ+GAY+ ILDLI
Sbjct: 7 PYHRRYHGDALQGYRRLTLEQRGAYTTILDLI 38
>gi|13471982|ref|NP_103549.1| hypothetical protein mll2129 [Mesorhizobium loti MAFF303099]
gi|14022727|dbj|BAB49335.1| mll2129 [Mesorhizobium loti MAFF303099]
Length = 232
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 2 VNNRPWYKRYPANFISGILELTLEQKGAYSIIL 34
++ RP+ + Y ++F+ L+L+ EQ GAY +IL
Sbjct: 1 MSERPFMQLYVSDFVGDTLQLSTEQIGAYMLIL 33
>gi|163868154|ref|YP_001609358.1| hypothetical protein Btr_0968 [Bartonella tribocorum CIP 105476]
gi|161017805|emb|CAK01363.1| hypothetical prophage protein [Bartonella tribocorum CIP 105476]
Length = 115
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 1 MVNNRPWYKRYPANFISGILELTLEQKGAYSIIL 34
M N PW + + ++ISG +TLEQ+GAY +L
Sbjct: 1 MSNGMPWIRFHLYDWISGTDGMTLEQRGAYMTLL 34
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.320 0.149 0.473
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 821,641,265
Number of Sequences: 14124377
Number of extensions: 19932259
Number of successful extensions: 45671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45662
Number of HSP's gapped (non-prelim): 9
length of query: 38
length of database: 4,842,793,630
effective HSP length: 12
effective length of query: 26
effective length of database: 4,673,301,106
effective search space: 121505828756
effective search space used: 121505828756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.7 bits)