BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62] (155 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62] gi|254040829|gb|ACT57625.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62] Length = 155 Score = 319 bits (818), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 155/155 (100%), Positives = 155/155 (100%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK Sbjct: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 Query: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP Sbjct: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120 Query: 121 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN Sbjct: 121 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155 >gi|315122541|ref|YP_004063030.1| hypothetical protein CKC_03965 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495943|gb|ADR52542.1| hypothetical protein CKC_03965 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 223 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/111 (72%), Positives = 92/111 (82%), Gaps = 3/111 (2%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKAS- 62 +YDRGGS+PDNDKYIAGVCGCSIR+WR+IR +LEK NKIF + GNIYN RVEKE+IKA Sbjct: 36 MYDRGGSVPDNDKYIAGVCGCSIRKWRSIRIVLEKANKIFSKGGNIYNYRVEKEMIKAMK 95 Query: 63 --EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSA 111 EERQENGRKGGIKSSQMR L+ K NNLFQG L+ AH KPE+IN ++ Sbjct: 96 AIEERQENGRKGGIKSSQMRTLTHKNNNLFQGILESAHASYKPEAINKKTS 146 >gi|13471982|ref|NP_103549.1| hypothetical protein mll2129 [Mesorhizobium loti MAFF303099] gi|14022727|dbj|BAB49335.1| mll2129 [Mesorhizobium loti MAFF303099] Length = 232 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 4/62 (6%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE-GNIYNVRVEKEII 59 ++++++ GG +PD+D +A V S++RWR I A L F F +E G I + R+ +E+ Sbjct: 33 LMAMWNAGGRLPDDDAKLARVARLSLKRWRAISADLLSF---FEREAGEIGHKRLTRELH 89 Query: 60 KA 61 KA Sbjct: 90 KA 91 >gi|18071243|ref|NP_542309.1| hypothetical protein PBC5p49 [Sinorhizobium phage PBC5] gi|17940349|gb|AAL49593.1|AF448724_30 unknown [Sinorhizobium phage PBC5] Length = 217 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 9/126 (7%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFI-QEGNIYNVRVEKEI---I 59 +YD G I N+++IAG CSIR+ R + + L KI+I G I N R E EI + Sbjct: 38 IYDACGPIDFNERWIAGELNCSIRKARALISELLDLQKIYITTRGQISNHRCEAEIENSV 97 Query: 60 KASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLK-----PAHVFQKPESINNYSAPVD 114 K S++ +E+ K K ++ R K N Q ++ P V + + S+ V+ Sbjct: 98 KISQKARESVMKREEKRTESRDFVNKINGSKQRSINDRSSIPVPVPDRIKPTERLSSGVE 157 Query: 115 FEKINP 120 ++ +P Sbjct: 158 EDRPDP 163 >gi|240850004|ref|YP_002971397.1| phage related protein [Bartonella grahamii as4aup] gi|240267127|gb|ACS50715.1| phage related protein [Bartonella grahamii as4aup] Length = 107 Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEI 58 ++ +YD+ I ++ + +A VC CS +++ I L K NK+ + ++N RVEKE+ Sbjct: 34 LVRMYDKKAPIKEDFETLARVCNCSQKKFATIVEYLTKNNKLLQTDKGLWNARVEKEL 91 >gi|315122542|ref|YP_004063031.1| hypothetical protein CKC_03970 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495944|gb|ADR52543.1| hypothetical protein CKC_03970 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 194 Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 24/38 (63%) Query: 109 YSAPVDFEKINPNPLNLVIALCCATDVLIHHYGIVTSR 146 Y D PL+L +ALC ATD+LI HYGIV+S+ Sbjct: 157 YFLARDSHTTYSTPLSLELALCHATDILIDHYGIVSSK 194 >gi|163868154|ref|YP_001609358.1| hypothetical protein Btr_0968 [Bartonella tribocorum CIP 105476] gi|161017805|emb|CAK01363.1| hypothetical prophage protein [Bartonella tribocorum CIP 105476] Length = 115 Score = 40.4 bits (93), Expect = 0.087, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 37/64 (57%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 ++ +YD+ I + + +A C CS +++ I L + +K+ +G ++N RVE+E+ Sbjct: 34 LVRMYDKKAPIKTDFQTLARACNCSQKKFATIVEYLMRNDKLIEIDGGLWNTRVEEELNN 93 Query: 61 ASEE 64 SEE Sbjct: 94 FSEE 97 >gi|222823823|ref|YP_002575397.1| hypothetical protein Cla_0819 [Campylobacter lari RM2100] gi|222539045|gb|ACM64146.1| conserved hypothetical protein [Campylobacter lari RM2100] Length = 856 Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 30 RNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNL 89 +NI IL+ FNK + + ++ +++K+ +KA R E+ +K +QM+I + K ++ Sbjct: 609 KNIDLILKDFNKTL--DFDQFDAKIKKDYVKAWANRNESKFDFLLKENQMQIRALKMDDD 666 Query: 90 FQGTLKPAHVFQKPE 104 F T +VF+K E Sbjct: 667 FLNTFMRQNVFEKGE 681 >gi|13476618|ref|NP_108188.1| hypothetical protein mlr7995 [Mesorhizobium loti MAFF303099] gi|14027380|dbj|BAB53649.1| mlr7995 [Mesorhizobium loti MAFF303099] Length = 161 Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKE 57 S+PD+D +A + G S+ RWR ++AI+ F + + R++KE Sbjct: 45 SLPDDDDMLARIAGVSLARWRKMKAIVMAFWSLDGRSKRWAQKRLKKE 92 >gi|56476946|ref|YP_158535.1| hypothetical protein ebA2684 [Aromatoleum aromaticum EbN1] gi|56312989|emb|CAI07634.1| hypothetical protein ebA2684 [Aromatoleum aromaticum EbN1] Length = 192 Score = 37.7 bits (86), Expect = 0.60, Method: Compositional matrix adjust. Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 ++ Y R G D+D+ +A + G SI W IR ++E F + G + R+++E+ Sbjct: 38 LLFAYWRSGPPKDDDRTLARIAGMSIDEWAEIRPMVEPFFDVL--HGQWLHWRLDEELEA 95 Query: 61 ASEE--RQENGRKGGIKSSQMRILSKKTNN 88 A + + N + K+ + S NN Sbjct: 96 AYDAINKASNAGRAAAKARWGKGKSGSQNN 125 >gi|319405080|emb|CBI78684.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 147 Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust. Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 7/79 (8%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 ++ +YD+ I ++ +A VC CS +++ I L + +K+ + ++N+R E+E+ Sbjct: 34 LVRMYDKKTPIREDFGTLARVCNCSQKKFAAIVEYLMRNDKLIETDDGLWNMRGEEELRD 93 Query: 61 ASEE-------RQENGRKG 72 S++ R E G+KG Sbjct: 94 FSDKKDHISQVRSEAGKKG 112 >gi|225425768|ref|XP_002271642.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296086409|emb|CBI31998.3| unnamed protein product [Vitis vinifera] Length = 534 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 7 RGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQ 66 R +IPDN + G G +I W + AI K N ++I GN+YN E + +A+ Q Sbjct: 220 RTYTIPDNAGKLGGYSGAAI--WGSSPAIDTKRNLVYIGTGNLYNAPTEVQQCQANRNNQ 277 >gi|169624319|ref|XP_001805565.1| hypothetical protein SNOG_15417 [Phaeosphaeria nodorum SN15] gi|160705149|gb|EAT77082.2| hypothetical protein SNOG_15417 [Phaeosphaeria nodorum SN15] Length = 354 Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 11/81 (13%) Query: 64 ERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINPNPL 123 +++ G+ G+K + LSK N F L HV+++ ++ +Y APV F+KI P P+ Sbjct: 85 KKEFEGKFPGMKLNLTTDLSKYHNGRFDEQLAAGHVWEEQGALLHY-APVGFDKIYP-PM 142 Query: 124 NLVIALCCATDVLIHHYGIVT 144 DV +YGI+T Sbjct: 143 R---------DVRAAYYGILT 154 >gi|240850549|ref|YP_002971949.1| phage related protein [Bartonella grahamii as4aup] gi|240267672|gb|ACS51260.1| phage related protein [Bartonella grahamii as4aup] Length = 376 Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEI-- 58 ++ +Y++ + + + +A VC CS +++ I L + +K+ + ++N RVE+E+ Sbjct: 34 LVCMYEKKEPLKTDFQTLARVCHCSQKKFAAIVEYLMRNDKLVETDNGLWNTRVEEELND 93 Query: 59 -----IKASEERQENGRKGG 73 S+ R E G+KG Sbjct: 94 FADKKEHISQVRSEAGKKGA 113 >gi|220904212|ref|YP_002479524.1| Phenylacetate--CoA ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868511|gb|ACL48846.1| Phenylacetate--CoA ligase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 432 Score = 35.4 bits (80), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%) Query: 13 DNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG-NIYNVRVEKEIIKASE 63 D +++ GVCGC R R + IL + + +FI +G N+Y ++VE+ I+ E Sbjct: 300 DLTRFLPGVCGCG-RMHRRMDRILGRADDMFIIKGVNVYPMQVEQVIMTFPE 350 >gi|291525195|emb|CBK90782.1| Topoisomerase IA [Eubacterium rectale DSM 17629] Length = 1260 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 76 SSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINPNPLNLVIALCCATDV 135 + +R K+ F LK K E N SA DFE + P + ++ C D+ Sbjct: 746 TDTIRGFKSKSGKRFDACLK----LNKDEQTNKVSATFDFENVKPQKVEGIVCPDCGGDI 801 Query: 136 LIHHYG 141 + YG Sbjct: 802 YVSPYG 807 >gi|238924507|ref|YP_002938023.1| DNA topoisomerase [Eubacterium rectale ATCC 33656] gi|238876182|gb|ACR75889.1| DNA topoisomerase [Eubacterium rectale ATCC 33656] Length = 1273 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 76 SSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINPNPLNLVIALCCATDV 135 + +R K+ F LK K E N SA DFE + P + ++ C D+ Sbjct: 746 TDTIRGFKSKSGKRFDACLK----LNKDEQTNKVSATFDFENVKPQKVEGIVCPDCGGDI 801 Query: 136 LIHHYG 141 + YG Sbjct: 802 YVSPYG 807 >gi|319899347|ref|YP_004159444.1| hypothetical protein BARCL_1202 [Bartonella clarridgeiae 73] gi|319403315|emb|CBI76874.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 290 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 18/122 (14%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60 +Y RG + + + +A +CGC R + ++ +L KI ++N R E E K Sbjct: 49 MYARGRPLDLSVERLARLCGCDKRTFESVLEMLITEGKILNLASGLWNARCETIFHERTK 108 Query: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQK--PESINNYSAPVDFEKI 118 E++ GR K KK N+ FQ H+F P++ N A EK Sbjct: 109 LLEQKSSAGRSSAKK-------RKKINDQFQ------HLFNASPPDAERNSEAQKAEEKE 155 Query: 119 NP 120 P Sbjct: 156 TP 157 >gi|291529344|emb|CBK94930.1| Topoisomerase IA [Eubacterium rectale M104/1] Length = 1249 Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 76 SSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINPNPLNLVIALCCATDV 135 + +R K+ F LK K E N SA DFE + P + ++ C D+ Sbjct: 746 TDTIRGFKSKSGKRFDACLK----LNKDEQTNKVSATFDFENVKPQKVEGIVCPDCGGDI 801 Query: 136 LIHHYG 141 + YG Sbjct: 802 YVSPYG 807 >gi|258648872|ref|ZP_05736341.1| GTP-binding protein YchF [Prevotella tannerae ATCC 51259] gi|260850895|gb|EEX70764.1| GTP-binding protein YchF [Prevotella tannerae ATCC 51259] Length = 367 Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 26 IRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKK 85 ++ +I + L K KI Q GN + +VE E++KA +E + G+ S + + K Sbjct: 134 LKDLESIESRLPKVEKI-AQMGNNKDAKVEYEVLKAYKEALDQGKSARTVSFETKEAQKA 192 Query: 86 TNNLFQGTLKP 96 ++LF T KP Sbjct: 193 AHDLFLLTAKP 203 >gi|227892018|ref|ZP_04009823.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] gi|227866222|gb|EEJ73643.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] Length = 1336 Score = 33.9 bits (76), Expect = 7.9, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 32 IRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNLFQ 91 + ILEK NKI + NI N +VEKE K +E + G++ + + + +K NN Sbjct: 988 VEEILEKQNKI-DKASNIQNSKVEKEH-KNQKETPKQGKQLQVINKLKTFIEEKINNTLS 1045 Query: 92 GTLKPAHVFQKPESINNYSA 111 + + +F + NNYSA Sbjct: 1046 TSQETLQLFSDMQKFNNYSA 1065 >gi|90962799|ref|YP_536714.1| hypothetical protein LSL_1826 [Lactobacillus salivarius UCC118] gi|90821993|gb|ABE00631.1| Hypothetical protein LSL_1826 [Lactobacillus salivarius UCC118] gi|300215415|gb|ADJ79828.1| Putative uncharacterized protein [Lactobacillus salivarius CECT 5713] Length = 1229 Score = 33.5 bits (75), Expect = 8.9, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 32 IRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNLFQ 91 + ILEK NKI + NI N +VEKE K +E + G++ + + + +K NN Sbjct: 881 VEEILEKQNKI-DKASNIQNSKVEKEH-KNQKETPKQGKQLQVINKLKTFIEEKINNTLS 938 Query: 92 GTLKPAHVFQKPESINNYSA 111 + + +F + NNYSA Sbjct: 939 TSQETLQLFSDMQKFNNYSA 958 Searching..................................................done Results from round 2 >gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62] gi|254040829|gb|ACT57625.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62] Length = 155 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 155/155 (100%), Positives = 155/155 (100%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK Sbjct: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 Query: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP Sbjct: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120 Query: 121 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN Sbjct: 121 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155 >gi|315122541|ref|YP_004063030.1| hypothetical protein CKC_03965 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495943|gb|ADR52542.1| hypothetical protein CKC_03965 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 223 Score = 209 bits (533), Expect = 8e-53, Method: Composition-based stats. Identities = 80/111 (72%), Positives = 92/111 (82%), Gaps = 3/111 (2%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKAS- 62 +YDRGGS+PDNDKYIAGVCGCSIR+WR+IR +LEK NKIF + GNIYN RVEKE+IKA Sbjct: 36 MYDRGGSVPDNDKYIAGVCGCSIRKWRSIRIVLEKANKIFSKGGNIYNYRVEKEMIKAMK 95 Query: 63 --EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSA 111 EERQENGRKGGIKSSQMR L+ K NNLFQG L+ AH KPE+IN ++ Sbjct: 96 AIEERQENGRKGGIKSSQMRTLTHKNNNLFQGILESAHASYKPEAINKKTS 146 >gi|18071243|ref|NP_542309.1| hypothetical protein PBC5p49 [Sinorhizobium phage PBC5] gi|17940349|gb|AAL49593.1|AF448724_30 unknown [Sinorhizobium phage PBC5] Length = 217 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 12/120 (10%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFI-QEGNIYNVRVEKEIIKAS 62 +YD G I N+++IAG CSIR+ R + + L KI+I G I N R E EI + Sbjct: 38 IYDACGPIDFNERWIAGELNCSIRKARALISELLDLQKIYITTRGQISNHRCEAEIENSV 97 Query: 63 EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSA-PVDF-EKINP 120 + Q+ R+ +K + R S+ N G+ K SIN+ S+ PV ++I P Sbjct: 98 KISQK-ARESVMKREEKRTESRDFVNKINGS--------KQRSINDRSSIPVPVPDRIKP 148 >gi|240850004|ref|YP_002971397.1| phage related protein [Bartonella grahamii as4aup] gi|240267127|gb|ACS50715.1| phage related protein [Bartonella grahamii as4aup] Length = 107 Score = 45.4 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 35/58 (60%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEI 58 ++ +YD+ I ++ + +A VC CS +++ I L K NK+ + ++N RVEKE+ Sbjct: 34 LVRMYDKKAPIKEDFETLARVCNCSQKKFATIVEYLTKNNKLLQTDKGLWNARVEKEL 91 >gi|163868154|ref|YP_001609358.1| hypothetical protein Btr_0968 [Bartonella tribocorum CIP 105476] gi|161017805|emb|CAK01363.1| hypothetical prophage protein [Bartonella tribocorum CIP 105476] Length = 115 Score = 42.3 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 37/64 (57%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 ++ +YD+ I + + +A C CS +++ I L + +K+ +G ++N RVE+E+ Sbjct: 34 LVRMYDKKAPIKTDFQTLARACNCSQKKFATIVEYLMRNDKLIEIDGGLWNTRVEEELNN 93 Query: 61 ASEE 64 SEE Sbjct: 94 FSEE 97 >gi|13471982|ref|NP_103549.1| hypothetical protein mll2129 [Mesorhizobium loti MAFF303099] gi|14022727|dbj|BAB49335.1| mll2129 [Mesorhizobium loti MAFF303099] Length = 232 Score = 41.5 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 4/62 (6%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE-GNIYNVRVEKEII 59 ++++++ GG +PD+D +A V S++RWR I A L F F +E G I + R+ +E+ Sbjct: 33 LMAMWNAGGRLPDDDAKLARVARLSLKRWRAISADLLSF---FEREAGEIGHKRLTRELH 89 Query: 60 KA 61 KA Sbjct: 90 KA 91 >gi|315122542|ref|YP_004063031.1| hypothetical protein CKC_03970 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495944|gb|ADR52543.1| hypothetical protein CKC_03970 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 194 Score = 40.4 bits (93), Expect = 0.093, Method: Composition-based stats. Identities = 17/25 (68%), Positives = 22/25 (88%) Query: 122 PLNLVIALCCATDVLIHHYGIVTSR 146 PL+L +ALC ATD+LI HYGIV+S+ Sbjct: 170 PLSLELALCHATDILIDHYGIVSSK 194 >gi|319899347|ref|YP_004159444.1| hypothetical protein BARCL_1202 [Bartonella clarridgeiae 73] gi|319403315|emb|CBI76874.1| conserved protein of unknown function [Bartonella clarridgeiae 73] Length = 290 Score = 39.2 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 14/120 (11%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK---EIIK 60 +Y RG + + + +A +CGC R + ++ +L KI ++N R E E K Sbjct: 49 MYARGRPLDLSVERLARLCGCDKRTFESVLEMLITEGKILNLASGLWNARCETIFHERTK 108 Query: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120 E++ GR K KK N+ FQ + P++ N A EK P Sbjct: 109 LLEQKSSAGRSSAKKR-------KKINDQFQHLFNAS----PPDAERNSEAQKAEEKETP 157 >gi|163869017|ref|YP_001610248.1| hypothetical protein Btr_2126 [Bartonella tribocorum CIP 105476] gi|161018695|emb|CAK02253.1| hypothetical protein BT_2126 [Bartonella tribocorum CIP 105476] Length = 355 Score = 38.8 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 15/122 (12%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60 +Y RG + +++ +A +CGC R + N+ +L + KI ++N R E +E K Sbjct: 49 MYARGRPLEISEERLARLCGCDKRTFVNVLEMLIREGKILNLANGLWNQRCENVFQEREK 108 Query: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTL----KPAHVFQKPESINNYSAPVD-F 115 E++ GR K KK N FQ L K + + P+ F Sbjct: 109 LLEQKSFAGRSSAKKR-------KKINAEFQQLLNERTKDDQQSLEAQKAEEKKTPIGVF 161 Query: 116 EK 117 EK Sbjct: 162 EK 163 >gi|319405080|emb|CBI78684.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 147 Score = 38.8 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 7/79 (8%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 ++ +YD+ I ++ +A VC CS +++ I L + +K+ + ++N+R E+E+ Sbjct: 34 LVRMYDKKTPIREDFGTLARVCNCSQKKFAAIVEYLMRNDKLIETDDGLWNMRGEEELRD 93 Query: 61 ASEE-------RQENGRKG 72 S++ R E G+KG Sbjct: 94 FSDKKDHISQVRSEAGKKG 112 >gi|240850549|ref|YP_002971949.1| phage related protein [Bartonella grahamii as4aup] gi|240267672|gb|ACS51260.1| phage related protein [Bartonella grahamii as4aup] Length = 376 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 51/93 (54%), Gaps = 3/93 (3%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 ++ +Y++ + + + +A VC CS +++ I L + +K+ + ++N RVE+E+ Sbjct: 34 LVCMYEKKEPLKTDFQTLARVCHCSQKKFAAIVEYLMRNDKLVETDNGLWNTRVEEELND 93 Query: 61 ASEERQENGR---KGGIKSSQMRILSKKTNNLF 90 +++++ + + G K +Q + +K+ N F Sbjct: 94 FADKKEHISQVRSEAGKKGAQAKNNTKQHVNNF 126 >gi|49474648|ref|YP_032690.1| hypothetical protein BQ11480 [Bartonella quintana str. Toulouse] gi|49240152|emb|CAF26608.1| hypothetical protein BQ11480 [Bartonella quintana str. Toulouse] Length = 332 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK---EIIK 60 +Y RG + + + +A +CGC R + N+ +L + KI ++N R E E +K Sbjct: 49 MYARGRPLELSVERLARLCGCDKRTFVNVLEMLVQEGKILNLANGLWNKRCENVFHERVK 108 Query: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPA 97 E++ GR S+Q R KK N FQ L + Sbjct: 109 LLEQKSFAGR----SSAQKR---KKINAKFQQLLNES 138 >gi|242025160|ref|XP_002432994.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis] gi|212518503|gb|EEB20256.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis] Length = 1249 Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 10/87 (11%) Query: 38 KFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSS-----QMRILSKKTNNLFQ- 91 K + F + + V + +I SE Q++ RK G+ +S Q + L K N +FQ Sbjct: 53 KKDAQFNAARDFVHYLVRQNVIDGSEIPQDSIRKDGLPNSSNGSCQNQELFHKNNTVFQP 112 Query: 92 ----GTLKPAHVFQKPESINNYSAPVD 114 G + A+ K + +NN +D Sbjct: 113 GMNPGLMGDAYCPYKNDGVNNSYTYID 139 >gi|319404738|emb|CBI78340.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 331 Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 14/134 (10%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60 +Y RG + + + +A +CGC R + ++ +L KI ++N R E E K Sbjct: 49 MYARGRPLNLSIERLARLCGCDKRTFESVLEMLITEGKILQLASGLWNTRCEIVFHERAK 108 Query: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTL--KPAHVFQKPES--INNYSAPVDFE 116 E++ GR K KK N FQ L P V + E+ P Sbjct: 109 LLEQKSSAGRSSAKKR-------KKINEQFQHLLNASPLDVERNSEAQKTEEKETPTGVS 161 Query: 117 KINPNPLNLVIALC 130 + P+ + + C Sbjct: 162 QKKPSAVVSSASFC 175 >gi|240851149|ref|YP_002972552.1| phage related protein [Bartonella grahamii as4aup] gi|240268272|gb|ACS51860.1| phage related protein [Bartonella grahamii as4aup] Length = 356 Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60 +Y RG + +++ +A +CGC R + N+ +L + KI ++N R E +E K Sbjct: 49 MYARGRPLEISEERLARLCGCDKRTFVNVLEMLIQEGKILNLANGLWNKRCENVFQEREK 108 Query: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVD-FEK 117 E++ GR K + ++ + L + K A + + P FEK Sbjct: 109 LLEQKSFAGRSSAKKRKK---INAEIQQLLNESTKDAAQSLEAQKTEEKKTPYGVFEK 163 >gi|319406225|emb|CBI79862.1| conserved hypothetical protein [Bartonella sp. AR 15-3] Length = 299 Score = 36.9 bits (84), Expect = 0.84, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 6/112 (5%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60 +Y RG + + + +A +CGC R + ++ +L KI ++N R E E K Sbjct: 49 MYARGRPLDLSSERLARLCGCDKRTFESVLEMLITEGKILHLANGLWNTRCEIVFHERAK 108 Query: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAP 112 E++ GR K +++ ++ +L +L A + + P Sbjct: 109 LLEQKSFAGRSSAKKRKKIK---EQFQHLLNASLLNAERNSEAQKSEEKETP 157 >gi|319407702|emb|CBI81350.1| conserved hypothetical protein [Bartonella sp. 1-1C] Length = 375 Score = 36.5 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 14/121 (11%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60 +Y RG + + + +A +CGC R + + +L KI ++N R E E K Sbjct: 49 MYARGRPLNLSIERLARLCGCDKRTFEGVLEMLITEGKILQLASGLWNTRCEIVFHERAK 108 Query: 61 ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120 E++ GR K KK N FQ L + + + S + EK P Sbjct: 109 LLEKKSSAGRSSAKKR-------KKINEQFQHLLNASPLDAERNSEAQKTE----EKETP 157 Query: 121 N 121 N Sbjct: 158 N 158 >gi|253745916|gb|EET01520.1| Serine/Threonine protein kinase [Giardia intestinalis ATCC 50581] Length = 1833 Score = 36.1 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Query: 31 NIRAILEKFNKIFIQEGNIYNVR-----VEKEIIKASEERQENGRKGGIKSSQMRILSKK 85 ++ + +E FN+I N+YN V K +KA ERQ++ R + + + + L+ + Sbjct: 614 SLASSIEHFNEICTNLNNLYNTHPVETSVLKNRLKALRERQQSLRGPSLSTPRDQELAHR 673 Query: 86 TNNLFQGTLKPAHVFQKPESINNYSA 111 T L + P++ +N S+ Sbjct: 674 TKTLHSSNQTITQLTSIPDADSNQSS 699 >gi|227892018|ref|ZP_04009823.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] gi|227866222|gb|EEJ73643.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741] Length = 1336 Score = 36.1 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 31 NIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNLF 90 + ILEK NKI + NI N +VEKE K +E + G++ + + + +K NN Sbjct: 987 AVEEILEKQNKI-DKASNIQNSKVEKEH-KNQKETPKQGKQLQVINKLKTFIEEKINNTL 1044 Query: 91 QGTLKPAHVFQKPESINNYSA 111 + + +F + NNYSA Sbjct: 1045 STSQETLQLFSDMQKFNNYSA 1065 >gi|90962799|ref|YP_536714.1| hypothetical protein LSL_1826 [Lactobacillus salivarius UCC118] gi|90821993|gb|ABE00631.1| Hypothetical protein LSL_1826 [Lactobacillus salivarius UCC118] gi|300215415|gb|ADJ79828.1| Putative uncharacterized protein [Lactobacillus salivarius CECT 5713] Length = 1229 Score = 36.1 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 31 NIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNLF 90 + ILEK NKI + NI N +VEKE K +E + G++ + + + +K NN Sbjct: 880 AVEEILEKQNKI-DKASNIQNSKVEKEH-KNQKETPKQGKQLQVINKLKTFIEEKINNTL 937 Query: 91 QGTLKPAHVFQKPESINNYSA 111 + + +F + NNYSA Sbjct: 938 STSQETLQLFSDMQKFNNYSA 958 >gi|2190551|gb|AAB60915.1| Similar to C. elegans hypothetical protein K07C5.6 (gb|Z71181). ESTs gb|H36844,gb|AA394956 come from this gene [Arabidopsis thaliana] Length = 489 Score = 36.1 bits (82), Expect = 1.8, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Query: 3 SLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGN--------IYNVRV 54 S YDRG I +KY G C +A +++ KI + N I + + Sbjct: 79 SWYDRGAKIFQAEKYRKGACQNCGAMTHTAKACMDRPRKIGAKYTNMNIAPDEKIESFEL 138 Query: 55 EKEIIKASEERQENGRKGGIKSSQMRILSKKTNN 88 + + + +E+ RK +K Q++ L +K NN Sbjct: 139 DYDGKRDRWNAKEDARKKYLKEQQLKKLEEKNNN 172 >gi|225425768|ref|XP_002271642.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296086409|emb|CBI31998.3| unnamed protein product [Vitis vinifera] Length = 534 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 7 RGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQ 66 R +IPDN + G G +I W + AI K N ++I GN+YN E + +A+ Q Sbjct: 220 RTYTIPDNAGKLGGYSGAAI--WGSSPAIDTKRNLVYIGTGNLYNAPTEVQQCQANRNNQ 277 >gi|301301407|ref|ZP_07207545.1| conserved domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300850959|gb|EFK78705.1| conserved domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 701 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 31 NIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNLF 90 + ILEK NKI + NI N +VEKE K +E + G++ + + + +K NN Sbjct: 352 AVEEILEKQNKI-DKASNIQNSKVEKEH-KNQKETPKQGKQLQVINKLKTFIEEKINNTL 409 Query: 91 QGTLKPAHVFQKPESINNYSA 111 + + +F + NNYSA Sbjct: 410 STSQETLQLFSDMQKFNNYSA 430 >gi|255570354|ref|XP_002526136.1| Protein MKS1, putative [Ricinus communis] gi|223534513|gb|EEF36212.1| Protein MKS1, putative [Ricinus communis] Length = 254 Score = 35.0 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%) Query: 63 EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVD 114 ++ Q +G G + +M + +++ NLF G L PA P S N +S P D Sbjct: 145 QQVQPSGDVGFFEGIEMSQVMERSGNLFHGILSPAPSSLPPISPNFFSPPSD 196 >gi|258596893|ref|XP_001349605.2| transporter, putative [Plasmodium falciparum 3D7] gi|254688467|gb|AAC71876.3| transporter, putative [Plasmodium falciparum 3D7] Length = 1132 Score = 34.6 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 13/95 (13%) Query: 4 LYDRGGSIPDNDKYIAGVC------GCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKE 57 +YD+ G D ++ C C++R + +A+ EK K E NI + KE Sbjct: 260 IYDKYGEF---DTFVEKFCDDINIDNCNLRHVKYTQALYEKRKK----EQNIIFYKKYKE 312 Query: 58 IIKASEERQENGRKGGIKSSQMRILSKKTNNLFQG 92 + ++ +NG + +R +++ TNN+F+G Sbjct: 313 LFGKNKLNLKNGNDINNRKKSLRCMNEGTNNIFKG 347 >gi|49476110|ref|YP_034151.1| hypothetical protein BH14490 [Bartonella henselae str. Houston-1] gi|49238918|emb|CAF28213.1| hypothetical protein BH14490 [Bartonella henselae str. Houston-1] Length = 309 Score = 34.6 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK---EIIK 60 +Y RG + + + +A +CGC R + N+ +L + KI ++N R E E K Sbjct: 16 MYARGRPLELSIERLARLCGCDKRTFVNVLEMLVREGKILNLAHGLWNKRCENVFYERAK 75 Query: 61 ASEERQENGRKGGIKSSQM 79 E++ GR K ++ Sbjct: 76 LLEQKSFAGRSSAKKRKKI 94 >gi|13476618|ref|NP_108188.1| hypothetical protein mlr7995 [Mesorhizobium loti MAFF303099] gi|14027380|dbj|BAB53649.1| mlr7995 [Mesorhizobium loti MAFF303099] Length = 161 Score = 34.6 bits (78), Expect = 5.2, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 28/48 (58%) Query: 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKE 57 S+PD+D +A + G S+ RWR ++AI+ F + + R++KE Sbjct: 45 SLPDDDDMLARIAGVSLARWRKMKAIVMAFWSLDGRSKRWAQKRLKKE 92 >gi|118371564|ref|XP_001018981.1| Zinc finger family protein [Tetrahymena thermophila] gi|89300748|gb|EAR98736.1| Zinc finger family protein [Tetrahymena thermophila SB210] Length = 1795 Score = 34.2 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 63 EERQENGRKGGIKSSQMRILSKKTNNLFQ-GTLKPAHVFQKPESINNYSAPVDFEKINPN 121 EE+ EN + +SSQ+ I S NN+F G++ H +N+Y F+ IN N Sbjct: 1166 EEKFENKKNKNTESSQIDIFSNPFNNVFDMGSINFDHSSTHQYDMNSYDYQGGFDNINNN 1225 Query: 122 PLN 124 N Sbjct: 1226 CFN 1228 >gi|308162693|gb|EFO65074.1| Serine/Threonine protein kinase [Giardia lamblia P15] Length = 1846 Score = 34.2 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Query: 31 NIRAILEKFNKIFIQEGNIYNVR-----VEKEIIKASEERQENGRKGGIKSSQMRILSKK 85 ++ + + FN++ + N+YN V K +KA ERQ+N + + + + + + + Sbjct: 617 SLASSMNHFNEVCVNLNNLYNTHPIETSVLKSKLKALRERQQNYQGLSLTTPRDQESTHR 676 Query: 86 TNNLFQGTLKPAHVFQKPESINNYSA 111 T L+ + P++ +N S+ Sbjct: 677 TKILYSNNQTATQLSSIPDADSNQSS 702 >gi|311278420|ref|YP_003940651.1| hypothetical protein Entcl_1100 [Enterobacter cloacae SCF1] gi|308747615|gb|ADO47367.1| conserved hypothetical protein [Enterobacter cloacae SCF1] Length = 293 Score = 33.8 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 8/93 (8%) Query: 36 LEKFNKIFIQEGNI--YNVRVEKEIIKASEERQENGRKGGIKSSQM-RILSKKTNNLFQG 92 +K +++F + + Y + V+K+ K R +GRKGGIK S+M R + +K L Sbjct: 154 FKKASELFDKSMGMVWYKISVDKQT-KLLSTRNRSGRKGGIKKSEMYRPIQEKLVELIND 212 Query: 93 TLKPAHVFQKPESINNYSAP----VDFEKINPN 121 K ++N P ++ K+N N Sbjct: 213 LAPEERWRSKAAAVNVLIEPLWLFIEESKLNVN 245 >gi|222823823|ref|YP_002575397.1| hypothetical protein Cla_0819 [Campylobacter lari RM2100] gi|222539045|gb|ACM64146.1| conserved hypothetical protein [Campylobacter lari RM2100] Length = 856 Score = 33.8 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 30 RNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNL 89 +NI IL+ FNK + + ++ +++K+ +KA R E+ +K +QM+I + K ++ Sbjct: 609 KNIDLILKDFNKTL--DFDQFDAKIKKDYVKAWANRNESKFDFLLKENQMQIRALKMDDD 666 Query: 90 FQGTLKPAHVFQKPE 104 F T +VF+K E Sbjct: 667 FLNTFMRQNVFEKGE 681 >gi|332523856|ref|ZP_08400108.1| alanine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176] gi|332315120|gb|EGJ28105.1| alanine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176] Length = 873 Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Query: 52 VRVEKEIIKA-SEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYS 110 ++++E KA +E+Q+ R +K M + N G ++P+ K E+++ Sbjct: 417 YKIDQEGFKAAMKEQQDRARAAVVKGGSMGM----QNETLAGIVEPSEFSYKEETLDAKL 472 Query: 111 APV 113 + + Sbjct: 473 SVI 475 >gi|290978706|ref|XP_002672076.1| predicted protein [Naegleria gruberi] gi|284085650|gb|EFC39332.1| predicted protein [Naegleria gruberi] Length = 1860 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Query: 26 IRRWRNIRAILEKFNKIFIQ-EGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSK 84 ++ NIR +K N I + E ++ + + +I+ +++ + RKG ++ R L+K Sbjct: 1068 LKEIENIRKYQKKLNTILDKTEKGVFKLEEAQYLIEKCKKKLASKRKGYGETKDYRELTK 1127 Query: 85 KTNNLFQGTLKPAHVFQKPESIN 107 + NN + + K E+ N Sbjct: 1128 RANNTYNELKRETKRIYKQEASN 1150 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.316 0.138 0.407 Lambda K H 0.267 0.0424 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,068,918,159 Number of Sequences: 14124377 Number of extensions: 121476082 Number of successful extensions: 278683 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 55 Number of HSP's that attempted gapping in prelim test: 278652 Number of HSP's gapped (non-prelim): 82 length of query: 155 length of database: 4,842,793,630 effective HSP length: 117 effective length of query: 38 effective length of database: 3,190,241,521 effective search space: 121229177798 effective search space used: 121229177798 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 76 (33.8 bits)