BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781152|ref|YP_003065565.1| hypothetical protein
CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62]
         (155 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040829|gb|ACT57625.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 155

 Score =  319 bits (818), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
           MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK
Sbjct: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120
           ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP
Sbjct: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120

Query: 121 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155
           NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN
Sbjct: 121 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155


>gi|315122541|ref|YP_004063030.1| hypothetical protein CKC_03965 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495943|gb|ADR52542.1| hypothetical protein CKC_03965 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 223

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/111 (72%), Positives = 92/111 (82%), Gaps = 3/111 (2%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKAS- 62
           +YDRGGS+PDNDKYIAGVCGCSIR+WR+IR +LEK NKIF + GNIYN RVEKE+IKA  
Sbjct: 36  MYDRGGSVPDNDKYIAGVCGCSIRKWRSIRIVLEKANKIFSKGGNIYNYRVEKEMIKAMK 95

Query: 63  --EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSA 111
             EERQENGRKGGIKSSQMR L+ K NNLFQG L+ AH   KPE+IN  ++
Sbjct: 96  AIEERQENGRKGGIKSSQMRTLTHKNNNLFQGILESAHASYKPEAINKKTS 146


>gi|13471982|ref|NP_103549.1| hypothetical protein mll2129 [Mesorhizobium loti MAFF303099]
 gi|14022727|dbj|BAB49335.1| mll2129 [Mesorhizobium loti MAFF303099]
          Length = 232

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 1  MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE-GNIYNVRVEKEII 59
          ++++++ GG +PD+D  +A V   S++RWR I A L  F   F +E G I + R+ +E+ 
Sbjct: 33 LMAMWNAGGRLPDDDAKLARVARLSLKRWRAISADLLSF---FEREAGEIGHKRLTRELH 89

Query: 60 KA 61
          KA
Sbjct: 90 KA 91


>gi|18071243|ref|NP_542309.1| hypothetical protein PBC5p49 [Sinorhizobium phage PBC5]
 gi|17940349|gb|AAL49593.1|AF448724_30 unknown [Sinorhizobium phage PBC5]
          Length = 217

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 9/126 (7%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFI-QEGNIYNVRVEKEI---I 59
           +YD  G I  N+++IAG   CSIR+ R + + L    KI+I   G I N R E EI   +
Sbjct: 38  IYDACGPIDFNERWIAGELNCSIRKARALISELLDLQKIYITTRGQISNHRCEAEIENSV 97

Query: 60  KASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLK-----PAHVFQKPESINNYSAPVD 114
           K S++ +E+  K   K ++ R    K N   Q ++      P  V  + +     S+ V+
Sbjct: 98  KISQKARESVMKREEKRTESRDFVNKINGSKQRSINDRSSIPVPVPDRIKPTERLSSGVE 157

Query: 115 FEKINP 120
            ++ +P
Sbjct: 158 EDRPDP 163


>gi|240850004|ref|YP_002971397.1| phage related protein [Bartonella grahamii as4aup]
 gi|240267127|gb|ACS50715.1| phage related protein [Bartonella grahamii as4aup]
          Length = 107

 Score = 43.5 bits (101), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 1  MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEI 58
          ++ +YD+   I ++ + +A VC CS +++  I   L K NK+   +  ++N RVEKE+
Sbjct: 34 LVRMYDKKAPIKEDFETLARVCNCSQKKFATIVEYLTKNNKLLQTDKGLWNARVEKEL 91


>gi|315122542|ref|YP_004063031.1| hypothetical protein CKC_03970 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495944|gb|ADR52543.1| hypothetical protein CKC_03970 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 194

 Score = 42.7 bits (99), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 109 YSAPVDFEKINPNPLNLVIALCCATDVLIHHYGIVTSR 146
           Y    D       PL+L +ALC ATD+LI HYGIV+S+
Sbjct: 157 YFLARDSHTTYSTPLSLELALCHATDILIDHYGIVSSK 194


>gi|163868154|ref|YP_001609358.1| hypothetical protein Btr_0968 [Bartonella tribocorum CIP 105476]
 gi|161017805|emb|CAK01363.1| hypothetical prophage protein [Bartonella tribocorum CIP 105476]
          Length = 115

 Score = 40.4 bits (93), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query: 1  MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
          ++ +YD+   I  + + +A  C CS +++  I   L + +K+   +G ++N RVE+E+  
Sbjct: 34 LVRMYDKKAPIKTDFQTLARACNCSQKKFATIVEYLMRNDKLIEIDGGLWNTRVEEELNN 93

Query: 61 ASEE 64
           SEE
Sbjct: 94 FSEE 97


>gi|222823823|ref|YP_002575397.1| hypothetical protein Cla_0819 [Campylobacter lari RM2100]
 gi|222539045|gb|ACM64146.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 856

 Score = 38.5 bits (88), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 30  RNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNL 89
           +NI  IL+ FNK    + + ++ +++K+ +KA   R E+     +K +QM+I + K ++ 
Sbjct: 609 KNIDLILKDFNKTL--DFDQFDAKIKKDYVKAWANRNESKFDFLLKENQMQIRALKMDDD 666

Query: 90  FQGTLKPAHVFQKPE 104
           F  T    +VF+K E
Sbjct: 667 FLNTFMRQNVFEKGE 681


>gi|13476618|ref|NP_108188.1| hypothetical protein mlr7995 [Mesorhizobium loti MAFF303099]
 gi|14027380|dbj|BAB53649.1| mlr7995 [Mesorhizobium loti MAFF303099]
          Length = 161

 Score = 38.1 bits (87), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKE 57
          S+PD+D  +A + G S+ RWR ++AI+  F  +  +       R++KE
Sbjct: 45 SLPDDDDMLARIAGVSLARWRKMKAIVMAFWSLDGRSKRWAQKRLKKE 92


>gi|56476946|ref|YP_158535.1| hypothetical protein ebA2684 [Aromatoleum aromaticum EbN1]
 gi|56312989|emb|CAI07634.1| hypothetical protein ebA2684 [Aromatoleum aromaticum EbN1]
          Length = 192

 Score = 37.7 bits (86), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
           ++  Y R G   D+D+ +A + G SI  W  IR ++E F  +    G   + R+++E+  
Sbjct: 38  LLFAYWRSGPPKDDDRTLARIAGMSIDEWAEIRPMVEPFFDVL--HGQWLHWRLDEELEA 95

Query: 61  ASEE--RQENGRKGGIKSSQMRILSKKTNN 88
           A +   +  N  +   K+   +  S   NN
Sbjct: 96  AYDAINKASNAGRAAAKARWGKGKSGSQNN 125


>gi|319405080|emb|CBI78684.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 147

 Score = 37.0 bits (84), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 7/79 (8%)

Query: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
           ++ +YD+   I ++   +A VC CS +++  I   L + +K+   +  ++N+R E+E+  
Sbjct: 34  LVRMYDKKTPIREDFGTLARVCNCSQKKFAAIVEYLMRNDKLIETDDGLWNMRGEEELRD 93

Query: 61  ASEE-------RQENGRKG 72
            S++       R E G+KG
Sbjct: 94  FSDKKDHISQVRSEAGKKG 112


>gi|225425768|ref|XP_002271642.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086409|emb|CBI31998.3| unnamed protein product [Vitis vinifera]
          Length = 534

 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 7   RGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQ 66
           R  +IPDN   + G  G +I  W +  AI  K N ++I  GN+YN   E +  +A+   Q
Sbjct: 220 RTYTIPDNAGKLGGYSGAAI--WGSSPAIDTKRNLVYIGTGNLYNAPTEVQQCQANRNNQ 277


>gi|169624319|ref|XP_001805565.1| hypothetical protein SNOG_15417 [Phaeosphaeria nodorum SN15]
 gi|160705149|gb|EAT77082.2| hypothetical protein SNOG_15417 [Phaeosphaeria nodorum SN15]
          Length = 354

 Score = 35.4 bits (80), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 11/81 (13%)

Query: 64  ERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINPNPL 123
           +++  G+  G+K +    LSK  N  F   L   HV+++  ++ +Y APV F+KI P P+
Sbjct: 85  KKEFEGKFPGMKLNLTTDLSKYHNGRFDEQLAAGHVWEEQGALLHY-APVGFDKIYP-PM 142

Query: 124 NLVIALCCATDVLIHHYGIVT 144
                     DV   +YGI+T
Sbjct: 143 R---------DVRAAYYGILT 154


>gi|240850549|ref|YP_002971949.1| phage related protein [Bartonella grahamii as4aup]
 gi|240267672|gb|ACS51260.1| phage related protein [Bartonella grahamii as4aup]
          Length = 376

 Score = 35.4 bits (80), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEI-- 58
           ++ +Y++   +  + + +A VC CS +++  I   L + +K+   +  ++N RVE+E+  
Sbjct: 34  LVCMYEKKEPLKTDFQTLARVCHCSQKKFAAIVEYLMRNDKLVETDNGLWNTRVEEELND 93

Query: 59  -----IKASEERQENGRKGG 73
                   S+ R E G+KG 
Sbjct: 94  FADKKEHISQVRSEAGKKGA 113


>gi|220904212|ref|YP_002479524.1| Phenylacetate--CoA ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868511|gb|ACL48846.1| Phenylacetate--CoA ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 432

 Score = 35.4 bits (80), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 13  DNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG-NIYNVRVEKEIIKASE 63
           D  +++ GVCGC  R  R +  IL + + +FI +G N+Y ++VE+ I+   E
Sbjct: 300 DLTRFLPGVCGCG-RMHRRMDRILGRADDMFIIKGVNVYPMQVEQVIMTFPE 350


>gi|291525195|emb|CBK90782.1| Topoisomerase IA [Eubacterium rectale DSM 17629]
          Length = 1260

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 76  SSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINPNPLNLVIALCCATDV 135
           +  +R    K+   F   LK      K E  N  SA  DFE + P  +  ++   C  D+
Sbjct: 746 TDTIRGFKSKSGKRFDACLK----LNKDEQTNKVSATFDFENVKPQKVEGIVCPDCGGDI 801

Query: 136 LIHHYG 141
            +  YG
Sbjct: 802 YVSPYG 807


>gi|238924507|ref|YP_002938023.1| DNA topoisomerase [Eubacterium rectale ATCC 33656]
 gi|238876182|gb|ACR75889.1| DNA topoisomerase [Eubacterium rectale ATCC 33656]
          Length = 1273

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 76  SSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINPNPLNLVIALCCATDV 135
           +  +R    K+   F   LK      K E  N  SA  DFE + P  +  ++   C  D+
Sbjct: 746 TDTIRGFKSKSGKRFDACLK----LNKDEQTNKVSATFDFENVKPQKVEGIVCPDCGGDI 801

Query: 136 LIHHYG 141
            +  YG
Sbjct: 802 YVSPYG 807


>gi|319899347|ref|YP_004159444.1| hypothetical protein BARCL_1202 [Bartonella clarridgeiae 73]
 gi|319403315|emb|CBI76874.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 290

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 18/122 (14%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60
           +Y RG  +  + + +A +CGC  R + ++  +L    KI      ++N R E    E  K
Sbjct: 49  MYARGRPLDLSVERLARLCGCDKRTFESVLEMLITEGKILNLASGLWNARCETIFHERTK 108

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQK--PESINNYSAPVDFEKI 118
             E++   GR    K        KK N+ FQ      H+F    P++  N  A    EK 
Sbjct: 109 LLEQKSSAGRSSAKK-------RKKINDQFQ------HLFNASPPDAERNSEAQKAEEKE 155

Query: 119 NP 120
            P
Sbjct: 156 TP 157


>gi|291529344|emb|CBK94930.1| Topoisomerase IA [Eubacterium rectale M104/1]
          Length = 1249

 Score = 34.3 bits (77), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 76  SSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINPNPLNLVIALCCATDV 135
           +  +R    K+   F   LK      K E  N  SA  DFE + P  +  ++   C  D+
Sbjct: 746 TDTIRGFKSKSGKRFDACLK----LNKDEQTNKVSATFDFENVKPQKVEGIVCPDCGGDI 801

Query: 136 LIHHYG 141
            +  YG
Sbjct: 802 YVSPYG 807


>gi|258648872|ref|ZP_05736341.1| GTP-binding protein YchF [Prevotella tannerae ATCC 51259]
 gi|260850895|gb|EEX70764.1| GTP-binding protein YchF [Prevotella tannerae ATCC 51259]
          Length = 367

 Score = 33.9 bits (76), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 26  IRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKK 85
           ++   +I + L K  KI  Q GN  + +VE E++KA +E  + G+     S + +   K 
Sbjct: 134 LKDLESIESRLPKVEKI-AQMGNNKDAKVEYEVLKAYKEALDQGKSARTVSFETKEAQKA 192

Query: 86  TNNLFQGTLKP 96
            ++LF  T KP
Sbjct: 193 AHDLFLLTAKP 203


>gi|227892018|ref|ZP_04009823.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741]
 gi|227866222|gb|EEJ73643.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741]
          Length = 1336

 Score = 33.9 bits (76), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 32   IRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNLFQ 91
            +  ILEK NKI  +  NI N +VEKE  K  +E  + G++  + +     + +K NN   
Sbjct: 988  VEEILEKQNKI-DKASNIQNSKVEKEH-KNQKETPKQGKQLQVINKLKTFIEEKINNTLS 1045

Query: 92   GTLKPAHVFQKPESINNYSA 111
             + +   +F   +  NNYSA
Sbjct: 1046 TSQETLQLFSDMQKFNNYSA 1065


>gi|90962799|ref|YP_536714.1| hypothetical protein LSL_1826 [Lactobacillus salivarius UCC118]
 gi|90821993|gb|ABE00631.1| Hypothetical protein LSL_1826 [Lactobacillus salivarius UCC118]
 gi|300215415|gb|ADJ79828.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
           5713]
          Length = 1229

 Score = 33.5 bits (75), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 32  IRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNLFQ 91
           +  ILEK NKI  +  NI N +VEKE  K  +E  + G++  + +     + +K NN   
Sbjct: 881 VEEILEKQNKI-DKASNIQNSKVEKEH-KNQKETPKQGKQLQVINKLKTFIEEKINNTLS 938

Query: 92  GTLKPAHVFQKPESINNYSA 111
            + +   +F   +  NNYSA
Sbjct: 939 TSQETLQLFSDMQKFNNYSA 958


Searching..................................................done


Results from round 2




>gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040829|gb|ACT57625.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 155

 Score =  299 bits (766), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
           MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK
Sbjct: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120
           ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP
Sbjct: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120

Query: 121 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155
           NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN
Sbjct: 121 NPLNLVIALCCATDVLIHHYGIVTSRRKNDTIISN 155


>gi|315122541|ref|YP_004063030.1| hypothetical protein CKC_03965 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495943|gb|ADR52542.1| hypothetical protein CKC_03965 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 223

 Score =  209 bits (533), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 80/111 (72%), Positives = 92/111 (82%), Gaps = 3/111 (2%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKAS- 62
           +YDRGGS+PDNDKYIAGVCGCSIR+WR+IR +LEK NKIF + GNIYN RVEKE+IKA  
Sbjct: 36  MYDRGGSVPDNDKYIAGVCGCSIRKWRSIRIVLEKANKIFSKGGNIYNYRVEKEMIKAMK 95

Query: 63  --EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSA 111
             EERQENGRKGGIKSSQMR L+ K NNLFQG L+ AH   KPE+IN  ++
Sbjct: 96  AIEERQENGRKGGIKSSQMRTLTHKNNNLFQGILESAHASYKPEAINKKTS 146


>gi|18071243|ref|NP_542309.1| hypothetical protein PBC5p49 [Sinorhizobium phage PBC5]
 gi|17940349|gb|AAL49593.1|AF448724_30 unknown [Sinorhizobium phage PBC5]
          Length = 217

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 12/120 (10%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFI-QEGNIYNVRVEKEIIKAS 62
           +YD  G I  N+++IAG   CSIR+ R + + L    KI+I   G I N R E EI  + 
Sbjct: 38  IYDACGPIDFNERWIAGELNCSIRKARALISELLDLQKIYITTRGQISNHRCEAEIENSV 97

Query: 63  EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSA-PVDF-EKINP 120
           +  Q+  R+  +K  + R  S+   N   G+        K  SIN+ S+ PV   ++I P
Sbjct: 98  KISQK-ARESVMKREEKRTESRDFVNKINGS--------KQRSINDRSSIPVPVPDRIKP 148


>gi|240850004|ref|YP_002971397.1| phage related protein [Bartonella grahamii as4aup]
 gi|240267127|gb|ACS50715.1| phage related protein [Bartonella grahamii as4aup]
          Length = 107

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 1  MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEI 58
          ++ +YD+   I ++ + +A VC CS +++  I   L K NK+   +  ++N RVEKE+
Sbjct: 34 LVRMYDKKAPIKEDFETLARVCNCSQKKFATIVEYLTKNNKLLQTDKGLWNARVEKEL 91


>gi|163868154|ref|YP_001609358.1| hypothetical protein Btr_0968 [Bartonella tribocorum CIP 105476]
 gi|161017805|emb|CAK01363.1| hypothetical prophage protein [Bartonella tribocorum CIP 105476]
          Length = 115

 Score = 42.3 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 37/64 (57%)

Query: 1  MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
          ++ +YD+   I  + + +A  C CS +++  I   L + +K+   +G ++N RVE+E+  
Sbjct: 34 LVRMYDKKAPIKTDFQTLARACNCSQKKFATIVEYLMRNDKLIEIDGGLWNTRVEEELNN 93

Query: 61 ASEE 64
           SEE
Sbjct: 94 FSEE 97


>gi|13471982|ref|NP_103549.1| hypothetical protein mll2129 [Mesorhizobium loti MAFF303099]
 gi|14022727|dbj|BAB49335.1| mll2129 [Mesorhizobium loti MAFF303099]
          Length = 232

 Score = 41.5 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 1  MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE-GNIYNVRVEKEII 59
          ++++++ GG +PD+D  +A V   S++RWR I A L  F   F +E G I + R+ +E+ 
Sbjct: 33 LMAMWNAGGRLPDDDAKLARVARLSLKRWRAISADLLSF---FEREAGEIGHKRLTRELH 89

Query: 60 KA 61
          KA
Sbjct: 90 KA 91


>gi|315122542|ref|YP_004063031.1| hypothetical protein CKC_03970 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495944|gb|ADR52543.1| hypothetical protein CKC_03970 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 194

 Score = 40.4 bits (93), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/25 (68%), Positives = 22/25 (88%)

Query: 122 PLNLVIALCCATDVLIHHYGIVTSR 146
           PL+L +ALC ATD+LI HYGIV+S+
Sbjct: 170 PLSLELALCHATDILIDHYGIVSSK 194


>gi|319899347|ref|YP_004159444.1| hypothetical protein BARCL_1202 [Bartonella clarridgeiae 73]
 gi|319403315|emb|CBI76874.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
          Length = 290

 Score = 39.2 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 14/120 (11%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK---EIIK 60
           +Y RG  +  + + +A +CGC  R + ++  +L    KI      ++N R E    E  K
Sbjct: 49  MYARGRPLDLSVERLARLCGCDKRTFESVLEMLITEGKILNLASGLWNARCETIFHERTK 108

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120
             E++   GR    K        KK N+ FQ     +     P++  N  A    EK  P
Sbjct: 109 LLEQKSSAGRSSAKKR-------KKINDQFQHLFNAS----PPDAERNSEAQKAEEKETP 157


>gi|163869017|ref|YP_001610248.1| hypothetical protein Btr_2126 [Bartonella tribocorum CIP 105476]
 gi|161018695|emb|CAK02253.1| hypothetical protein BT_2126 [Bartonella tribocorum CIP 105476]
          Length = 355

 Score = 38.8 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 15/122 (12%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60
           +Y RG  +  +++ +A +CGC  R + N+  +L +  KI      ++N R E   +E  K
Sbjct: 49  MYARGRPLEISEERLARLCGCDKRTFVNVLEMLIREGKILNLANGLWNQRCENVFQEREK 108

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTL----KPAHVFQKPESINNYSAPVD-F 115
             E++   GR    K        KK N  FQ  L    K      + +       P+  F
Sbjct: 109 LLEQKSFAGRSSAKKR-------KKINAEFQQLLNERTKDDQQSLEAQKAEEKKTPIGVF 161

Query: 116 EK 117
           EK
Sbjct: 162 EK 163


>gi|319405080|emb|CBI78684.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 147

 Score = 38.8 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 7/79 (8%)

Query: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
           ++ +YD+   I ++   +A VC CS +++  I   L + +K+   +  ++N+R E+E+  
Sbjct: 34  LVRMYDKKTPIREDFGTLARVCNCSQKKFAAIVEYLMRNDKLIETDDGLWNMRGEEELRD 93

Query: 61  ASEE-------RQENGRKG 72
            S++       R E G+KG
Sbjct: 94  FSDKKDHISQVRSEAGKKG 112


>gi|240850549|ref|YP_002971949.1| phage related protein [Bartonella grahamii as4aup]
 gi|240267672|gb|ACS51260.1| phage related protein [Bartonella grahamii as4aup]
          Length = 376

 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
           ++ +Y++   +  + + +A VC CS +++  I   L + +K+   +  ++N RVE+E+  
Sbjct: 34  LVCMYEKKEPLKTDFQTLARVCHCSQKKFAAIVEYLMRNDKLVETDNGLWNTRVEEELND 93

Query: 61  ASEERQENGR---KGGIKSSQMRILSKKTNNLF 90
            +++++   +   + G K +Q +  +K+  N F
Sbjct: 94  FADKKEHISQVRSEAGKKGAQAKNNTKQHVNNF 126


>gi|49474648|ref|YP_032690.1| hypothetical protein BQ11480 [Bartonella quintana str. Toulouse]
 gi|49240152|emb|CAF26608.1| hypothetical protein BQ11480 [Bartonella quintana str. Toulouse]
          Length = 332

 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 10/97 (10%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK---EIIK 60
           +Y RG  +  + + +A +CGC  R + N+  +L +  KI      ++N R E    E +K
Sbjct: 49  MYARGRPLELSVERLARLCGCDKRTFVNVLEMLVQEGKILNLANGLWNKRCENVFHERVK 108

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPA 97
             E++   GR     S+Q R   KK N  FQ  L  +
Sbjct: 109 LLEQKSFAGR----SSAQKR---KKINAKFQQLLNES 138


>gi|242025160|ref|XP_002432994.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis]
 gi|212518503|gb|EEB20256.1| ATP-dependent RNA helicase A, putative [Pediculus humanus corporis]
          Length = 1249

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 38  KFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSS-----QMRILSKKTNNLFQ- 91
           K +  F    +  +  V + +I  SE  Q++ RK G+ +S     Q + L  K N +FQ 
Sbjct: 53  KKDAQFNAARDFVHYLVRQNVIDGSEIPQDSIRKDGLPNSSNGSCQNQELFHKNNTVFQP 112

Query: 92  ----GTLKPAHVFQKPESINNYSAPVD 114
               G +  A+   K + +NN    +D
Sbjct: 113 GMNPGLMGDAYCPYKNDGVNNSYTYID 139


>gi|319404738|emb|CBI78340.1| conserved hypothetical protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 331

 Score = 38.1 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60
           +Y RG  +  + + +A +CGC  R + ++  +L    KI      ++N R E    E  K
Sbjct: 49  MYARGRPLNLSIERLARLCGCDKRTFESVLEMLITEGKILQLASGLWNTRCEIVFHERAK 108

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTL--KPAHVFQKPES--INNYSAPVDFE 116
             E++   GR    K        KK N  FQ  L   P  V +  E+        P    
Sbjct: 109 LLEQKSSAGRSSAKKR-------KKINEQFQHLLNASPLDVERNSEAQKTEEKETPTGVS 161

Query: 117 KINPNPLNLVIALC 130
           +  P+ +    + C
Sbjct: 162 QKKPSAVVSSASFC 175


>gi|240851149|ref|YP_002972552.1| phage related protein [Bartonella grahamii as4aup]
 gi|240268272|gb|ACS51860.1| phage related protein [Bartonella grahamii as4aup]
          Length = 356

 Score = 37.7 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60
           +Y RG  +  +++ +A +CGC  R + N+  +L +  KI      ++N R E   +E  K
Sbjct: 49  MYARGRPLEISEERLARLCGCDKRTFVNVLEMLIQEGKILNLANGLWNKRCENVFQEREK 108

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVD-FEK 117
             E++   GR    K  +   ++ +   L   + K A    + +       P   FEK
Sbjct: 109 LLEQKSFAGRSSAKKRKK---INAEIQQLLNESTKDAAQSLEAQKTEEKKTPYGVFEK 163


>gi|319406225|emb|CBI79862.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
          Length = 299

 Score = 36.9 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60
           +Y RG  +  + + +A +CGC  R + ++  +L    KI      ++N R E    E  K
Sbjct: 49  MYARGRPLDLSSERLARLCGCDKRTFESVLEMLITEGKILHLANGLWNTRCEIVFHERAK 108

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAP 112
             E++   GR    K  +++   ++  +L   +L  A    + +       P
Sbjct: 109 LLEQKSFAGRSSAKKRKKIK---EQFQHLLNASLLNAERNSEAQKSEEKETP 157


>gi|319407702|emb|CBI81350.1| conserved hypothetical protein [Bartonella sp. 1-1C]
          Length = 375

 Score = 36.5 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 14/121 (11%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVE---KEIIK 60
           +Y RG  +  + + +A +CGC  R +  +  +L    KI      ++N R E    E  K
Sbjct: 49  MYARGRPLNLSIERLARLCGCDKRTFEGVLEMLITEGKILQLASGLWNTRCEIVFHERAK 108

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINP 120
             E++   GR    K        KK N  FQ  L  + +  +  S    +     EK  P
Sbjct: 109 LLEKKSSAGRSSAKKR-------KKINEQFQHLLNASPLDAERNSEAQKTE----EKETP 157

Query: 121 N 121
           N
Sbjct: 158 N 158


>gi|253745916|gb|EET01520.1| Serine/Threonine protein kinase [Giardia intestinalis ATCC 50581]
          Length = 1833

 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 31  NIRAILEKFNKIFIQEGNIYNVR-----VEKEIIKASEERQENGRKGGIKSSQMRILSKK 85
           ++ + +E FN+I     N+YN       V K  +KA  ERQ++ R   + + + + L+ +
Sbjct: 614 SLASSIEHFNEICTNLNNLYNTHPVETSVLKNRLKALRERQQSLRGPSLSTPRDQELAHR 673

Query: 86  TNNLFQGTLKPAHVFQKPESINNYSA 111
           T  L         +   P++ +N S+
Sbjct: 674 TKTLHSSNQTITQLTSIPDADSNQSS 699


>gi|227892018|ref|ZP_04009823.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741]
 gi|227866222|gb|EEJ73643.1| conserved hypothetical protein [Lactobacillus salivarius ATCC 11741]
          Length = 1336

 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 31   NIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNLF 90
             +  ILEK NKI  +  NI N +VEKE  K  +E  + G++  + +     + +K NN  
Sbjct: 987  AVEEILEKQNKI-DKASNIQNSKVEKEH-KNQKETPKQGKQLQVINKLKTFIEEKINNTL 1044

Query: 91   QGTLKPAHVFQKPESINNYSA 111
              + +   +F   +  NNYSA
Sbjct: 1045 STSQETLQLFSDMQKFNNYSA 1065


>gi|90962799|ref|YP_536714.1| hypothetical protein LSL_1826 [Lactobacillus salivarius UCC118]
 gi|90821993|gb|ABE00631.1| Hypothetical protein LSL_1826 [Lactobacillus salivarius UCC118]
 gi|300215415|gb|ADJ79828.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
           5713]
          Length = 1229

 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 31  NIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNLF 90
            +  ILEK NKI  +  NI N +VEKE  K  +E  + G++  + +     + +K NN  
Sbjct: 880 AVEEILEKQNKI-DKASNIQNSKVEKEH-KNQKETPKQGKQLQVINKLKTFIEEKINNTL 937

Query: 91  QGTLKPAHVFQKPESINNYSA 111
             + +   +F   +  NNYSA
Sbjct: 938 STSQETLQLFSDMQKFNNYSA 958


>gi|2190551|gb|AAB60915.1| Similar to C. elegans hypothetical protein K07C5.6 (gb|Z71181).
           ESTs gb|H36844,gb|AA394956 come from this gene
           [Arabidopsis thaliana]
          Length = 489

 Score = 36.1 bits (82), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 3   SLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGN--------IYNVRV 54
           S YDRG  I   +KY  G C          +A +++  KI  +  N        I +  +
Sbjct: 79  SWYDRGAKIFQAEKYRKGACQNCGAMTHTAKACMDRPRKIGAKYTNMNIAPDEKIESFEL 138

Query: 55  EKEIIKASEERQENGRKGGIKSSQMRILSKKTNN 88
           + +  +     +E+ RK  +K  Q++ L +K NN
Sbjct: 139 DYDGKRDRWNAKEDARKKYLKEQQLKKLEEKNNN 172


>gi|225425768|ref|XP_002271642.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296086409|emb|CBI31998.3| unnamed protein product [Vitis vinifera]
          Length = 534

 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 7   RGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQ 66
           R  +IPDN   + G  G +I  W +  AI  K N ++I  GN+YN   E +  +A+   Q
Sbjct: 220 RTYTIPDNAGKLGGYSGAAI--WGSSPAIDTKRNLVYIGTGNLYNAPTEVQQCQANRNNQ 277


>gi|301301407|ref|ZP_07207545.1| conserved domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300850959|gb|EFK78705.1| conserved domain protein [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 701

 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 31  NIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNLF 90
            +  ILEK NKI  +  NI N +VEKE  K  +E  + G++  + +     + +K NN  
Sbjct: 352 AVEEILEKQNKI-DKASNIQNSKVEKEH-KNQKETPKQGKQLQVINKLKTFIEEKINNTL 409

Query: 91  QGTLKPAHVFQKPESINNYSA 111
             + +   +F   +  NNYSA
Sbjct: 410 STSQETLQLFSDMQKFNNYSA 430


>gi|255570354|ref|XP_002526136.1| Protein MKS1, putative [Ricinus communis]
 gi|223534513|gb|EEF36212.1| Protein MKS1, putative [Ricinus communis]
          Length = 254

 Score = 35.0 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 63  EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVD 114
           ++ Q +G  G  +  +M  + +++ NLF G L PA     P S N +S P D
Sbjct: 145 QQVQPSGDVGFFEGIEMSQVMERSGNLFHGILSPAPSSLPPISPNFFSPPSD 196


>gi|258596893|ref|XP_001349605.2| transporter, putative [Plasmodium falciparum 3D7]
 gi|254688467|gb|AAC71876.3| transporter, putative [Plasmodium falciparum 3D7]
          Length = 1132

 Score = 34.6 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 13/95 (13%)

Query: 4   LYDRGGSIPDNDKYIAGVC------GCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKE 57
           +YD+ G     D ++   C       C++R  +  +A+ EK  K    E NI   +  KE
Sbjct: 260 IYDKYGEF---DTFVEKFCDDINIDNCNLRHVKYTQALYEKRKK----EQNIIFYKKYKE 312

Query: 58  IIKASEERQENGRKGGIKSSQMRILSKKTNNLFQG 92
           +   ++   +NG     +   +R +++ TNN+F+G
Sbjct: 313 LFGKNKLNLKNGNDINNRKKSLRCMNEGTNNIFKG 347


>gi|49476110|ref|YP_034151.1| hypothetical protein BH14490 [Bartonella henselae str. Houston-1]
 gi|49238918|emb|CAF28213.1| hypothetical protein BH14490 [Bartonella henselae str. Houston-1]
          Length = 309

 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 4  LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEK---EIIK 60
          +Y RG  +  + + +A +CGC  R + N+  +L +  KI      ++N R E    E  K
Sbjct: 16 MYARGRPLELSIERLARLCGCDKRTFVNVLEMLVREGKILNLAHGLWNKRCENVFYERAK 75

Query: 61 ASEERQENGRKGGIKSSQM 79
            E++   GR    K  ++
Sbjct: 76 LLEQKSFAGRSSAKKRKKI 94


>gi|13476618|ref|NP_108188.1| hypothetical protein mlr7995 [Mesorhizobium loti MAFF303099]
 gi|14027380|dbj|BAB53649.1| mlr7995 [Mesorhizobium loti MAFF303099]
          Length = 161

 Score = 34.6 bits (78), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 10 SIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKE 57
          S+PD+D  +A + G S+ RWR ++AI+  F  +  +       R++KE
Sbjct: 45 SLPDDDDMLARIAGVSLARWRKMKAIVMAFWSLDGRSKRWAQKRLKKE 92


>gi|118371564|ref|XP_001018981.1| Zinc finger family protein [Tetrahymena thermophila]
 gi|89300748|gb|EAR98736.1| Zinc finger family protein [Tetrahymena thermophila SB210]
          Length = 1795

 Score = 34.2 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 63   EERQENGRKGGIKSSQMRILSKKTNNLFQ-GTLKPAHVFQKPESINNYSAPVDFEKINPN 121
            EE+ EN +    +SSQ+ I S   NN+F  G++   H       +N+Y     F+ IN N
Sbjct: 1166 EEKFENKKNKNTESSQIDIFSNPFNNVFDMGSINFDHSSTHQYDMNSYDYQGGFDNINNN 1225

Query: 122  PLN 124
              N
Sbjct: 1226 CFN 1228


>gi|308162693|gb|EFO65074.1| Serine/Threonine protein kinase [Giardia lamblia P15]
          Length = 1846

 Score = 34.2 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 31  NIRAILEKFNKIFIQEGNIYNVR-----VEKEIIKASEERQENGRKGGIKSSQMRILSKK 85
           ++ + +  FN++ +   N+YN       V K  +KA  ERQ+N +   + + + +  + +
Sbjct: 617 SLASSMNHFNEVCVNLNNLYNTHPIETSVLKSKLKALRERQQNYQGLSLTTPRDQESTHR 676

Query: 86  TNNLFQGTLKPAHVFQKPESINNYSA 111
           T  L+        +   P++ +N S+
Sbjct: 677 TKILYSNNQTATQLSSIPDADSNQSS 702


>gi|311278420|ref|YP_003940651.1| hypothetical protein Entcl_1100 [Enterobacter cloacae SCF1]
 gi|308747615|gb|ADO47367.1| conserved hypothetical protein [Enterobacter cloacae SCF1]
          Length = 293

 Score = 33.8 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 36  LEKFNKIFIQEGNI--YNVRVEKEIIKASEERQENGRKGGIKSSQM-RILSKKTNNLFQG 92
            +K +++F +   +  Y + V+K+  K    R  +GRKGGIK S+M R + +K   L   
Sbjct: 154 FKKASELFDKSMGMVWYKISVDKQT-KLLSTRNRSGRKGGIKKSEMYRPIQEKLVELIND 212

Query: 93  TLKPAHVFQKPESINNYSAP----VDFEKINPN 121
                    K  ++N    P    ++  K+N N
Sbjct: 213 LAPEERWRSKAAAVNVLIEPLWLFIEESKLNVN 245


>gi|222823823|ref|YP_002575397.1| hypothetical protein Cla_0819 [Campylobacter lari RM2100]
 gi|222539045|gb|ACM64146.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 856

 Score = 33.8 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 30  RNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKKTNNL 89
           +NI  IL+ FNK    + + ++ +++K+ +KA   R E+     +K +QM+I + K ++ 
Sbjct: 609 KNIDLILKDFNKTL--DFDQFDAKIKKDYVKAWANRNESKFDFLLKENQMQIRALKMDDD 666

Query: 90  FQGTLKPAHVFQKPE 104
           F  T    +VF+K E
Sbjct: 667 FLNTFMRQNVFEKGE 681


>gi|332523856|ref|ZP_08400108.1| alanine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
 gi|332315120|gb|EGJ28105.1| alanine--tRNA ligase [Streptococcus porcinus str. Jelinkova 176]
          Length = 873

 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 52  VRVEKEIIKA-SEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYS 110
            ++++E  KA  +E+Q+  R   +K   M +     N    G ++P+    K E+++   
Sbjct: 417 YKIDQEGFKAAMKEQQDRARAAVVKGGSMGM----QNETLAGIVEPSEFSYKEETLDAKL 472

Query: 111 APV 113
           + +
Sbjct: 473 SVI 475


>gi|290978706|ref|XP_002672076.1| predicted protein [Naegleria gruberi]
 gi|284085650|gb|EFC39332.1| predicted protein [Naegleria gruberi]
          Length = 1860

 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 26   IRRWRNIRAILEKFNKIFIQ-EGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSK 84
            ++   NIR   +K N I  + E  ++ +   + +I+  +++  + RKG  ++   R L+K
Sbjct: 1068 LKEIENIRKYQKKLNTILDKTEKGVFKLEEAQYLIEKCKKKLASKRKGYGETKDYRELTK 1127

Query: 85   KTNNLFQGTLKPAHVFQKPESIN 107
            + NN +    +      K E+ N
Sbjct: 1128 RANNTYNELKRETKRIYKQEASN 1150


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.316    0.138    0.407 

Lambda     K      H
   0.267   0.0424    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,068,918,159
Number of Sequences: 14124377
Number of extensions: 121476082
Number of successful extensions: 278683
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 278652
Number of HSP's gapped (non-prelim): 82
length of query: 155
length of database: 4,842,793,630
effective HSP length: 117
effective length of query: 38
effective length of database: 3,190,241,521
effective search space: 121229177798
effective search space used: 121229177798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.8 bits)