RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781152|ref|YP_003065565.1| hypothetical protein
CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62]
(155 letters)
>gnl|CDD|33551 COG3756, COG3756, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 153
Score = 47.0 bits (111), Expect = 2e-06
Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEI-- 58
+++ + IP + +A S +RWR + AIL++F +Q +N R ++EI
Sbjct: 30 LMAYWATEKPIPADKAALARAAALSKKRWRAVDAILDEF--FSLQGDGWHNKRCDEEIAA 87
Query: 59 IKASEERQENGRKGGIKSSQMR 80
E + +++ + R
Sbjct: 88 QVEKEAKASGAAGKSVQALRTR 109
>gnl|CDD|38955 KOG3751, KOG3751, KOG3751, Growth factor receptor-bound proteins
(GRB7, GRB10, GRB14) [Signal transduction mechanisms].
Length = 622
Score = 27.3 bits (60), Expect = 1.8
Identities = 12/108 (11%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 26 IRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRILSKK 85
+ W + + ++ ++ Q+G + + + ++ + + + +
Sbjct: 518 SQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSNPKIFVLSLCHPQKVKHFQILPVED 577
Query: 86 TNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINPNPLNLVIALCCAT 133
F TL ++ V+F ++N L + CC
Sbjct: 578 DGCTFF-TLDDGPT-----KFSDLIQLVEFYQLNKGVLPCALKHCCER 619
>gnl|CDD|32646 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication,
recombination, and repair].
Length = 188
Score = 26.8 bits (59), Expect = 2.9
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Query: 80 RILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEKINPNPLNLVIALCCATDV--LI 137
R+ FQ L V +K E+ D EK+ A DV L+
Sbjct: 31 RLFELLCLEGFQAGLSWLTVLKKREAFREAFHGFDPEKV---------AAMTEEDVERLL 81
Query: 138 HHYGIVTSRRKNDTIISN 155
GI+ +R K I+N
Sbjct: 82 ADAGIIRNRGKIKATINN 99
>gnl|CDD|58176 cd03510, Rhizobitoxine-FADS-like, This CD includes the
dihydrorhizobitoxine fatty acid desaturase (RtxC)
characterized in Bradyrhizobium japonicum USDA110, and
other related proteins. Dihydrorhizobitoxine desaturase
is reported to be involved in the final step of
rhizobitoxine biosynthesis. This domain family appears
to be structurally related to the membrane fatty acid
desaturases and the alkane hydroxylases. They all share
in common extensive hydrophobic regions that would be
capable of spanning the membrane bilayer at least twice.
Comparison of sequences also reveals the existence of
three regions of conserved histidine cluster motifs that
contain eight histidine residues: HXXXH, HXX(X)HH, and
HXXHH. These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within homologs, stearoyl
CoA desaturase and alkane hydroxylase..
Length = 175
Score = 26.7 bits (59), Expect = 3.0
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 110 SAPVDFEKINPNPLNLVIALCC------ATDVLIH---HYGIVTSRRKNDTII 153
+A V PN L ++A+ A +L+H H + +RR ND +
Sbjct: 6 AAAVALALAWPNWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLG 58
>gnl|CDD|32207 COG2024, COG2024, Phenylalanyl-tRNA synthetase alpha subunit
(archaeal type) [Translation, ribosomal structure and
biogenesis].
Length = 536
Score = 26.5 bits (58), Expect = 3.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 39 FNKIFIQEGNIYNVRVEKEIIKASEER 65
FN++++ +GNIY + KE EE
Sbjct: 432 FNEVYVYDGNIYGIPPTKEWGSEFEEE 458
>gnl|CDD|145239 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 26.5 bits (59), Expect = 3.7
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 32 IRAILEKF-NKIFI-QEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMR--ILSKKTN 87
+R +L + + I ++ Y R KEI K + E ++NG K K + R L +
Sbjct: 25 LRGLLSELLQWLLIDRKMEKYKKR-MKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQK 83
Query: 88 NLFQGTLKP 96
+ +KP
Sbjct: 84 EMMMDMMKP 92
>gnl|CDD|33380 COG3580, COG3580, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 351
Score = 26.4 bits (58), Expect = 3.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 32 IRAILEKFNKIF----IQEGN---IYNVRVEKEIIKASEERQENGRKGGIKS 76
I ILE NKI+ I EG +R+E + A +ER+ N K +S
Sbjct: 294 IEEILEGHNKIYTVLKIDEGTNLGAIRIRLES-LKAAMKERERNNVKNEERS 344
>gnl|CDD|32641 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA
replication, recombination, and repair].
Length = 515
Score = 25.8 bits (56), Expect = 5.2
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 69 GRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAP 112
G +G K++ RIL+K N T +P + IN S
Sbjct: 45 GPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLI 88
>gnl|CDD|39297 KOG4094, KOG4094, KOG4094, Uncharacterized conserved protein
[Function unknown].
Length = 178
Score = 25.4 bits (55), Expect = 6.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 27 RRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQM 79
R+ R R L ++N F E N R EKE + +QE+GR + +++M
Sbjct: 78 RQLRLAREELNQWNSDFWAEHNQLFDR-EKEDFIERKLQQESGRLEHVSANEM 129
>gnl|CDD|35593 KOG0372, KOG0372, KOG0372, Serine/threonine specific protein
phosphatase involved in glycogen accumulation,
PP2A-related [Carbohydrate transport and metabolism,
Signal transduction mechanisms].
Length = 303
Score = 25.6 bits (56), Expect = 6.6
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 13 DNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVR 53
D D+ I + C + ++A+ K +I ++E N+ +
Sbjct: 2 DLDRQIEQLRRCELIAESEVKALCAKVREILVEESNVQRID 42
>gnl|CDD|37425 KOG2214, KOG2214, KOG2214, Predicted esterase of the alpha-beta
hydrolase superfamily [General function prediction
only].
Length = 543
Score = 25.3 bits (55), Expect = 7.9
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 84 KKTNNLFQGTLKPAHVFQKPESINNYSAP 112
+T + + P+ + P +N +AP
Sbjct: 286 DRTGRILNIVVPPSSKSEPPRLLNYLTAP 314
>gnl|CDD|36850 KOG1637, KOG1637, KOG1637, Threonyl-tRNA synthetase [Translation,
ribosomal structure and biogenesis].
Length = 560
Score = 24.9 bits (54), Expect = 8.6
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 5 YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEE 64
YD I ND + IR I+A N EG+ + + + +K E+
Sbjct: 101 YDMLDEISSND--FPSIEAPHIRHTGKIKAFKILKNSSAYWEGDSFP---DPKQLKEWEK 155
Query: 65 RQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEK 117
QE +K R + K+ F L P F P Y+ VDF +
Sbjct: 156 FQEEAKK-----RDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIR 203
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.137 0.403
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,881,612
Number of extensions: 92038
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 15
Length of query: 155
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,405,363
Effective search space: 303970047
Effective search space used: 303970047
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)