RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781152|ref|YP_003065565.1| hypothetical protein
CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62]
         (155 letters)



>gnl|CDD|148622 pfam07120, DUF1376, Protein of unknown function (DUF1376).  This
          family consists of several hypothetical bacterial
          proteins of around 95 residues in length. The function
          of this family is unknown.
          Length = 88

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 5  YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKA 61
          +   G +PD+D  +A + GCS + W      +         +G   N R E+E+  A
Sbjct: 33 WATEGPLPDDDARLARLAGCSTKEWAAAVEFVLSEFFE-ELDGRWTNKRCEEELAAA 88


>gnl|CDD|184323 PRK13783, PRK13783, adenylosuccinate synthetase; Provisional.
          Length = 404

 Score = 30.8 bits (70), Expect = 0.14
 Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 36  LEKFNKIFIQEGNIYNVRVE-KEIIKASEERQENGRKGGIKSSQMRILSKKTNNLFQGT 93
            E   KI      +Y +  + +++++      E  +   +   +++ + ++ + LF+GT
Sbjct: 156 REFLEKILSLYKKLYGIEFDVEKMMEDLLTFYEKIKDLVVSPVEIKRILEEKSVLFEGT 214


>gnl|CDD|173488 PTZ00239, PTZ00239, serine/threonine protein phosphatase 2A;
          Provisional.
          Length = 303

 Score = 29.8 bits (67), Expect = 0.30
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 13 DNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVR 53
          D D++IA +        R+++ I E+  +IF++E N+  VR
Sbjct: 2  DIDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVR 42


>gnl|CDD|119069 pfam10549, ORF11CD3, ORF11CD3 domain.  This domain was identified
          by Iyer and colleagues.
          Length = 57

 Score = 29.3 bits (66), Expect = 0.48
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 13 DNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNI 49
           ++K IA +CG  + RW+  + +LE   +    +  I
Sbjct: 16 KDEKDIASLCGKGLARWKIKKPVLEARIEELEDQLQI 52


>gnl|CDD|182647 PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent;
           Provisional.
          Length = 332

 Score = 28.1 bits (63), Expect = 1.0
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 13/60 (21%)

Query: 13  DNDKYIAGVCGC------SIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQ 66
             DKY+    GC      S+RRW     +L+   +  +Q   I+NVR  +++I A E RQ
Sbjct: 110 AEDKYLLLAAGCGVTPIMSMRRW-----LLKNRPQADVQV--IFNVRTPQDVIFADEWRQ 162


>gnl|CDD|183633 PRK12627, flgB, flagellar basal body rod protein FlgB; Provisional.
          Length = 128

 Score = 28.2 bits (63), Expect = 1.1
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 47  GNIYNVRVEKEIIKASEERQENGRKGGIKSSQMRIL 82
           GN  +V +E+E+++A E ++++ R   I  S M +L
Sbjct: 88  GN--SVSLEEEMLRAVEAKRQHDRALAIYKSSMSLL 121


>gnl|CDD|180491 PRK06253, PRK06253, O-phosphoseryl-tRNA synthetase; Reviewed.
          Length = 529

 Score = 27.2 bits (61), Expect = 1.7
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 39  FNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGI 74
            N++++ +GNI  +   KE +K  +   E G   GI
Sbjct: 425 LNEVYVYDGNILGIPDTKEKLKEVK---EEGVSTGI 457


>gnl|CDD|162350 TIGR01419, nitro_reg_IIA, PTS IIA-like nitrogen-regulatory protein
           PtsN.  Members of this family are found in
           Proteobacteria, Chlamydia, and the spirochete Treponema
           pallidum.
          Length = 145

 Score = 26.2 bits (58), Expect = 4.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 111 APVDFEKINPNPLNLVIAL 129
           APVDF+ ++  P++L+ AL
Sbjct: 83  APVDFDALDGKPVDLLFAL 101


>gnl|CDD|182073 PRK09783, PRK09783, copper/silver efflux system membrane fusion
           protein CusB; Provisional.
          Length = 409

 Score = 25.6 bits (56), Expect = 5.3
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 61  ASEERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNY 109
           A EE   +     I  +Q + L  KT  + +G L  A  F    S N Y
Sbjct: 73  ADEESSASSGGVRIDPTQTQNLGVKTATVTRGPLTFAQTFPANVSYNEY 121


>gnl|CDD|148396 pfam06766, Hydrophobin_2, Fungal hydrophobin.  This is a family of
           fungal hydrophobins that seems to be restricted to
           ascomycetes. These are small, moderately hydrophobic
           extracellular proteins that have eight cysteine residues
           arranged in a strictly conserved motif. Hydrophobins are
           generally found on the outer surface of conidia and of
           the hyphal wall, and may be involved in mediating
           contact and communication between the fungus and its
           environment. Note that some family members contain
           multiple copies.
          Length = 66

 Score = 25.3 bits (56), Expect = 7.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 128 ALCCATDVL 136
             CCATDVL
Sbjct: 10  PQCCATDVL 18


>gnl|CDD|152161 pfam11725, AvrE, Pathogenicity factor.  This family is secreted by
            gram-negative Gammaproteobacteria such as Pseudomonas
            syringae of tomato and the fire blight plant pathogen
            Erwinia amylovora, amongst others. It is an essential
            pathogenicity factor of approximately 198 kDa. Its
            injection into the host-plant is dependent upon the
            bacterial type III or Hrp secretion system. The family is
            long and carries a number of predicted functional
            regions, including an ERMS or endoplasmic reticulum
            membrane retention signal at both the C- and the
            N-termini, a leucine-zipper motif from residues 539-560,
            and a nuclear localisation signal at 1358-1361. this
            conserved AvrE-family of effectors is among the few that
            are required for full virulence of many phytopathogenic
            pseudomonads, erwinias and pantoeas.
          Length = 1771

 Score = 25.1 bits (55), Expect = 8.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 87   NNLFQGTLKPAHVFQK 102
            + LF+G L P  + +K
Sbjct: 1331 DGLFEGKLNPLDLLKK 1346


>gnl|CDD|184063 PRK13456, PRK13456, DNA protection protein DPS; Provisional.
          Length = 186

 Score = 25.1 bits (55), Expect = 8.8
 Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRR----WRNIRAILEK 38
           +Y+ GG +P + +    +  C          + + IL+ 
Sbjct: 76  IYELGGKLPRDIREFHDISACPDAYLPENPTDPKEILKV 114


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0829    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,532,581
Number of extensions: 149727
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 24
Length of query: 155
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 70
Effective length of database: 4,157,793
Effective search space: 291045510
Effective search space used: 291045510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)