RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781152|ref|YP_003065565.1| hypothetical protein
CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62]
         (155 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.0 bits (88), Expect = 9e-04
 Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 88/187 (47%)

Query: 32  IRAILEKFNKIFIQEGNIYNV------------RVEKEIIK----ASEERQENGRKGGIK 75
           +   L +F   +++  +I+ +               KE+IK    A    +    K    
Sbjct: 84  LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK-KSN 142

Query: 76  SSQMRILSKKTNNLF-----QG--------------TLKP-------------------- 96
           S+  R + +    L      QG              T                       
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202

Query: 97  ---AHVFQK----------PESI--NNY--SAPVDFEKINPNPLNLVIALCCATDVLIHH 139
                VF +          P +    +Y  S P+        PL  VI L         H
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC------PLIGVIQLA--------H 248

Query: 140 YGIVTSR 146
           Y +VT++
Sbjct: 249 Y-VVTAK 254



 Score = 37.2 bits (86), Expect = 0.002
 Identities = 38/190 (20%), Positives = 56/190 (29%), Gaps = 83/190 (43%)

Query: 17  YIAGVCGCSIRRWRNIR--AILEKFNK-------IFIQEGNI-------------YNVRV 54
           YI      + R +      A+     +       IF  +GN              Y+V V
Sbjct: 126 YITA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184

Query: 55  EKEIIKASEER-QENGRKGGIKSSQMRILSKKTNN---LF-QGTLKPAHVFQKPESI--N 107
             ++IK S E   E              L + T +   +F QG L      + P +    
Sbjct: 185 G-DLIKFSAETLSE--------------LIRTTLDAEKVFTQG-LNILEWLENPSNTPDK 228

Query: 108 NY--SAPVDFEKINPNPLNLVIALC-----C----------------ATDVLIHHYGIVT 144
           +Y  S P+        PL  VI L                       AT    H  G+VT
Sbjct: 229 DYLLSIPISC------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG---HSQGLVT 279

Query: 145 SRRKNDTIIS 154
           +       I+
Sbjct: 280 A-----VAIA 284



 Score = 26.4 bits (58), Expect = 3.1
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 24/107 (22%)

Query: 17   YIAGVCGCSIRRWRNIRA-ILE-------KFNKIF--IQEGNI-YNVRVEKEIIKASEER 65
            +  G  G  IR   N  A I E       K  KIF  I E +  Y  R EK ++ A++  
Sbjct: 1675 HFGGEKGKRIRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732

Query: 66   QENGRKGGIKSSQMRILSKKT-NNLFQGTLKPAHVFQKPESINNYSA 111
            Q            + ++ K    +L    L PA       S+  Y+A
Sbjct: 1733 Q----------PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 25/86 (29%)

Query: 25  SIRRWR-NIRAILEKFN---KIFIQEGNIYNVRVEKEIIKASEERQE-NGRKGGIKSSQM 79
           SIR+WR   R  L++ +   K+  QE         +E  KA ++ +E N R    +S Q+
Sbjct: 86  SIRKWREEQRKRLQELDAASKVMEQEW--------RE--KAKKDLEEWNQR----QSEQV 131

Query: 80  RILSKKTNNLFQGTLKPAHVFQKPES 105
                K NN     +     +Q+P++
Sbjct: 132 E--KNKINN----RIADKAFYQQPDA 151


>2wmi_A Fucolectin-related protein; glycoside hydrolase, hydrolase, fucose
           utilization, blood group antigen; HET: A2G GAL FUC;
           1.90A {Streptococcus pneumoniae} PDB: 2wmj_A* 2wmk_A*
           2wmi_B*
          Length = 606

 Score = 31.0 bits (70), Expect = 0.12
 Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 28  RWRNIRAILEKFNKIFIQE--GNIYNVRVE 55
            + + +A  E  NK++     G+I+  +++
Sbjct: 423 EFSSTQARKEYLNKLYPMNYEGDIFAQKLD 452


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 29.0 bits (64), Expect = 0.44
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 19/86 (22%)

Query: 43  FIQEGNIYNVRVEKEIIKASEERQE------------NGRKGGIKSSQMRILSKKTNNLF 90
           F+ E   +  ++ KE+++ SE R+             NG       +Q+ I  +    L 
Sbjct: 733 FVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLD 792

Query: 91  QGTLKPAHVFQKPESINNYSAPVDFE 116
              LKP   +++ + I    AP + E
Sbjct: 793 FPELKP---YKQVKQI----APAELE 811


>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood
           group antigen, fucose utilization; 1.50A {Streptococcus
           pneumoniae} PDB: 2wmh_A* 2wmg_A*
          Length = 581

 Score = 28.4 bits (63), Expect = 0.81
 Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 26  IRRWRNIRAILEKFNKIFIQE--GNIYNVRVE 55
            +    + + +   N ++ +   G+ Y  RV 
Sbjct: 397 TKNSEELSSKVNYLNSLYPKLYEGDGYAQRVG 428


>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 685

 Score = 27.6 bits (61), Expect = 1.2
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 39  FNKIFIQEGNIYNV-----RVEKEIIKASEERQENGRKGGIK 75
            N+I++ +GN+  +      V++E     E+ +  G   GI+
Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485


>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 665

 Score = 27.2 bits (60), Expect = 1.7
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 39  FNKIFIQEGNIYNV-----RVEKEIIKASEERQENGRKGGIK 75
            N+I++ +GN+  +      V++E     E+ +  G   GI+
Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485


>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 648

 Score = 26.9 bits (59), Expect = 1.9
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 39  FNKIFIQEGNIYNV-----RVEKEIIKASEERQENGRKGGIK 75
            N+I++ +GN+  +      V++E     E+ +  G   GI+
Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485


>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
           II, ligase; 3.23A {Methanococcus maripaludis S2}
          Length = 701

 Score = 26.9 bits (59), Expect = 1.9
 Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 39  FNKIFIQEGNIYNVRVEKEIIKAS-EERQENGRKGGIKS 76
            N+I++ +GN+  +    + +K   ++  E G+  G+ +
Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVAT 482


>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
           {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
          Length = 571

 Score = 26.3 bits (57), Expect = 3.5
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 8   GGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47
            GS P+ + Y   V   S  R   +  +  K  ++    G
Sbjct: 83  EGSTPNGNDYDRDVVIISTLRLDKLHVL-GKGEQVLAYPG 121


>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
          subunit alpha isoform; protein-protein complex, heat
          repeat, signaling protein; HET: OKA; 2.60A {Homo
          sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3c5w_C
          2ie3_C* 3fga_C* 2iae_C* 2nym_C* 2nyl_C*
          Length = 309

 Score = 26.1 bits (57), Expect = 3.6
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 6  DRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVR 53
          D      + D++I  +  C       ++++ EK  +I  +E N+  VR
Sbjct: 2  DEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVR 49


>3bjx_A Halocarboxylic acid dehalogenase DEHI; plasmid, hydrolase; 2.30A
           {Pseudomonas putida}
          Length = 311

 Score = 25.6 bits (56), Expect = 4.5
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 22  CGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMR 80
            G        +R +L  FN      GN   + +   + ++ + R   G +   +     
Sbjct: 108 AGFDDGEIEKVRRVLYAFN-----YGNPKYLLLITALSESMQMRPVGGAEVSSELRASI 161


>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
           complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
           2du4_A 2du5_A* 2du6_A*
          Length = 534

 Score = 25.7 bits (56), Expect = 5.4
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 39  FNKIFIQEGNIYNVRVEKEIIKASEE 64
            N++ + +G+IY +   K+     EE
Sbjct: 431 ANEVVVYKGDIYGIPKTKKWRSFFEE 456


>2v79_A DNA replication protein DNAD; primosome, DNA remodelling,
           oligomerization domain, DNA-binding protein; HET: DNA;
           2.00A {Bacillus subtilis}
          Length = 135

 Score = 25.3 bits (55), Expect = 5.6
 Identities = 8/83 (9%), Positives = 23/83 (27%), Gaps = 13/83 (15%)

Query: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKF----------NKIFIQEGNIY 50
           +    ++G   P  ++ +      S+    N   +  +                 E    
Sbjct: 41  IKMHLEKGSYFPTPNQ-LQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSL 99

Query: 51  NVRVEK--EIIKASEERQENGRK 71
                K  E I+ ++ + +  + 
Sbjct: 100 QPLWGKLYEYIQLAQNQTQERKA 122


>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
           transferase, ATP sulfurylase, APS kinase, PAPS; HET:
           ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
           c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
          Length = 630

 Score = 25.3 bits (55), Expect = 5.7
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 31  NIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60
           NIR  L K N  F  E    NVR   E+ K
Sbjct: 90  NIRQGLNK-NLGFSPEDREENVRRIAEVAK 118


>2b97_A Hydrophobin II, hfbii; ultra-high resolution, surfactant,
           amphiphilic, surface active protein; 0.75A {Hypocrea
           jecorina} SCOP: b.138.1.1 PDB: 1r2m_A 2pl6_A* 2pl7_A*
          Length = 71

 Score = 25.1 bits (55), Expect = 7.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 128 ALCCATDVL 136
            LCCAT+VL
Sbjct: 11  PLCCATNVL 19


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0622    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,392,758
Number of extensions: 62264
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 28
Length of query: 155
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 71
Effective length of database: 3,656,734
Effective search space: 259628114
Effective search space used: 259628114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)