RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781152|ref|YP_003065565.1| hypothetical protein CLIBASIA_05295 [Candidatus Liberibacter asiaticus str. psy62] (155 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.0 bits (88), Expect = 9e-04 Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 88/187 (47%) Query: 32 IRAILEKFNKIFIQEGNIYNV------------RVEKEIIK----ASEERQENGRKGGIK 75 + L +F +++ +I+ + KE+IK A + K Sbjct: 84 LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK-KSN 142 Query: 76 SSQMRILSKKTNNLF-----QG--------------TLKP-------------------- 96 S+ R + + L QG T Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202 Query: 97 ---AHVFQK----------PESI--NNY--SAPVDFEKINPNPLNLVIALCCATDVLIHH 139 VF + P + +Y S P+ PL VI L H Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC------PLIGVIQLA--------H 248 Query: 140 YGIVTSR 146 Y +VT++ Sbjct: 249 Y-VVTAK 254 Score = 37.2 bits (86), Expect = 0.002 Identities = 38/190 (20%), Positives = 56/190 (29%), Gaps = 83/190 (43%) Query: 17 YIAGVCGCSIRRWRNIR--AILEKFNK-------IFIQEGNI-------------YNVRV 54 YI + R + A+ + IF +GN Y+V V Sbjct: 126 YITA-RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184 Query: 55 EKEIIKASEER-QENGRKGGIKSSQMRILSKKTNN---LF-QGTLKPAHVFQKPESI--N 107 ++IK S E E L + T + +F QG L + P + Sbjct: 185 G-DLIKFSAETLSE--------------LIRTTLDAEKVFTQG-LNILEWLENPSNTPDK 228 Query: 108 NY--SAPVDFEKINPNPLNLVIALC-----C----------------ATDVLIHHYGIVT 144 +Y S P+ PL VI L AT H G+VT Sbjct: 229 DYLLSIPISC------PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG---HSQGLVT 279 Query: 145 SRRKNDTIIS 154 + I+ Sbjct: 280 A-----VAIA 284 Score = 26.4 bits (58), Expect = 3.1 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 24/107 (22%) Query: 17 YIAGVCGCSIRRWRNIRA-ILE-------KFNKIF--IQEGNI-YNVRVEKEIIKASEER 65 + G G IR N A I E K KIF I E + Y R EK ++ A++ Sbjct: 1675 HFGGEKGKRIRE--NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732 Query: 66 QENGRKGGIKSSQMRILSKKT-NNLFQGTLKPAHVFQKPESINNYSA 111 Q + ++ K +L L PA S+ Y+A Sbjct: 1733 Q----------PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 36.1 bits (82), Expect = 0.004 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 25/86 (29%) Query: 25 SIRRWR-NIRAILEKFN---KIFIQEGNIYNVRVEKEIIKASEERQE-NGRKGGIKSSQM 79 SIR+WR R L++ + K+ QE +E KA ++ +E N R +S Q+ Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEW--------RE--KAKKDLEEWNQR----QSEQV 131 Query: 80 RILSKKTNNLFQGTLKPAHVFQKPES 105 K NN + +Q+P++ Sbjct: 132 E--KNKINN----RIADKAFYQQPDA 151 >2wmi_A Fucolectin-related protein; glycoside hydrolase, hydrolase, fucose utilization, blood group antigen; HET: A2G GAL FUC; 1.90A {Streptococcus pneumoniae} PDB: 2wmj_A* 2wmk_A* 2wmi_B* Length = 606 Score = 31.0 bits (70), Expect = 0.12 Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 2/30 (6%) Query: 28 RWRNIRAILEKFNKIFIQE--GNIYNVRVE 55 + + +A E NK++ G+I+ +++ Sbjct: 423 EFSSTQARKEYLNKLYPMNYEGDIFAQKLD 452 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 29.0 bits (64), Expect = 0.44 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 19/86 (22%) Query: 43 FIQEGNIYNVRVEKEIIKASEERQE------------NGRKGGIKSSQMRILSKKTNNLF 90 F+ E + ++ KE+++ SE R+ NG +Q+ I + L Sbjct: 733 FVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLD 792 Query: 91 QGTLKPAHVFQKPESINNYSAPVDFE 116 LKP +++ + I AP + E Sbjct: 793 FPELKP---YKQVKQI----APAELE 811 >2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood group antigen, fucose utilization; 1.50A {Streptococcus pneumoniae} PDB: 2wmh_A* 2wmg_A* Length = 581 Score = 28.4 bits (63), Expect = 0.81 Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 2/32 (6%) Query: 26 IRRWRNIRAILEKFNKIFIQE--GNIYNVRVE 55 + + + + N ++ + G+ Y RV Sbjct: 397 TKNSEELSSKVNYLNSLYPKLYEGDGYAQRVG 428 >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 685 Score = 27.6 bits (61), Expect = 1.2 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 39 FNKIFIQEGNIYNV-----RVEKEIIKASEERQENGRKGGIK 75 N+I++ +GN+ + V++E E+ + G GI+ Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485 >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 665 Score = 27.2 bits (60), Expect = 1.7 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 39 FNKIFIQEGNIYNV-----RVEKEIIKASEERQENGRKGGIK 75 N+I++ +GN+ + V++E E+ + G GI+ Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485 >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 648 Score = 26.9 bits (59), Expect = 1.9 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 39 FNKIFIQEGNIYNV-----RVEKEIIKASEERQENGRKGGIK 75 N+I++ +GN+ + V++E E+ + G GI+ Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVATGIR 485 >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 701 Score = 26.9 bits (59), Expect = 1.9 Identities = 8/39 (20%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Query: 39 FNKIFIQEGNIYNVRVEKEIIKAS-EERQENGRKGGIKS 76 N+I++ +GN+ + + +K ++ E G+ G+ + Sbjct: 444 LNEIYVYDGNVIGIPESFDGVKEEFKDFLEKGKSEGVAT 482 >1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Length = 571 Score = 26.3 bits (57), Expect = 3.5 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 1/40 (2%) Query: 8 GGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEG 47 GS P+ + Y V S R + + K ++ G Sbjct: 83 EGSTPNGNDYDRDVVIISTLRLDKLHVL-GKGEQVLAYPG 121 >2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 2nym_C* 2nyl_C* Length = 309 Score = 26.1 bits (57), Expect = 3.6 Identities = 11/48 (22%), Positives = 22/48 (45%) Query: 6 DRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVR 53 D + D++I + C ++++ EK +I +E N+ VR Sbjct: 2 DEKVFTKELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVR 49 >3bjx_A Halocarboxylic acid dehalogenase DEHI; plasmid, hydrolase; 2.30A {Pseudomonas putida} Length = 311 Score = 25.6 bits (56), Expect = 4.5 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 5/59 (8%) Query: 22 CGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMR 80 G +R +L FN GN + + + ++ + R G + + Sbjct: 108 AGFDDGEIEKVRRVLYAFN-----YGNPKYLLLITALSESMQMRPVGGAEVSSELRASI 161 >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Length = 534 Score = 25.7 bits (56), Expect = 5.4 Identities = 7/26 (26%), Positives = 14/26 (53%) Query: 39 FNKIFIQEGNIYNVRVEKEIIKASEE 64 N++ + +G+IY + K+ EE Sbjct: 431 ANEVVVYKGDIYGIPKTKKWRSFFEE 456 >2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Length = 135 Score = 25.3 bits (55), Expect = 5.6 Identities = 8/83 (9%), Positives = 23/83 (27%), Gaps = 13/83 (15%) Query: 1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKF----------NKIFIQEGNIY 50 + ++G P ++ + S+ N + + E Sbjct: 41 IKMHLEKGSYFPTPNQ-LQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSL 99 Query: 51 NVRVEK--EIIKASEERQENGRK 71 K E I+ ++ + + + Sbjct: 100 QPLWGKLYEYIQLAQNQTQERKA 122 >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Length = 630 Score = 25.3 bits (55), Expect = 5.7 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%) Query: 31 NIRAILEKFNKIFIQEGNIYNVRVEKEIIK 60 NIR L K N F E NVR E+ K Sbjct: 90 NIRQGLNK-NLGFSPEDREENVRRIAEVAK 118 >2b97_A Hydrophobin II, hfbii; ultra-high resolution, surfactant, amphiphilic, surface active protein; 0.75A {Hypocrea jecorina} SCOP: b.138.1.1 PDB: 1r2m_A 2pl6_A* 2pl7_A* Length = 71 Score = 25.1 bits (55), Expect = 7.4 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 128 ALCCATDVL 136 LCCAT+VL Sbjct: 11 PLCCATNVL 19 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.137 0.403 Gapped Lambda K H 0.267 0.0622 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,392,758 Number of extensions: 62264 Number of successful extensions: 158 Number of sequences better than 10.0: 1 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 28 Length of query: 155 Length of database: 5,693,230 Length adjustment: 84 Effective length of query: 71 Effective length of database: 3,656,734 Effective search space: 259628114 Effective search space used: 259628114 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.0 bits)