Query         gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 30
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:23:48 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781153.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1suy_C CIIABD, circadian cloc  10.5      62  0.0018   16.4  -0.2   18   12-29      8-25  (34)
  2 >3doa_A Fibrinogen binding pro   8.9      84  0.0025   15.8   0.0   20    3-22     32-53  (70)
  3 >3ggz_E Vacuolar protein-sorti   8.7 1.1E+02  0.0033   15.3   0.6   10   14-23      7-16  (29)
  4 >1szh_A HER-1 protein; extende   6.2 1.7E+02  0.0049   14.5   0.5   11   11-21     62-72  (72)
  5 >1z1a_A Regulatory protein SIR   6.1 1.6E+02  0.0048   14.5   0.4   19   11-29     35-53  (69)
  6 >1t3t_A Phosphoribosylformylgl   5.3   2E+02   0.006   14.1   0.5   13   18-30     20-32  (250)
  7 >2epl_X N-acetyl-beta-D-glucos   5.0 1.8E+02  0.0053   14.3   0.1   13    1-13      1-13  (108)
  8 >1u7z_A Coenzyme A biosynthesi   4.1   1E+02   0.003   15.4  -1.7   19   10-28     13-31  (226)
  9 >2p11_A Hypothetical protein;    3.5 3.1E+02  0.0092   13.3   0.4   13   15-27     74-87  (142)
 10 >1e9y_A Urease alpha subunit;    3.5 2.6E+02  0.0078   13.6  -0.0   10    4-13     21-30  (79)

No 1  
>>1suy_C CIIABD, circadian clock protein KAIC; X-class four helix bundle, protein-peptide complex; NMR {Thermosynechococcus elongatus bp-1} PDB: 1sv1_C (C:)
Probab=10.48  E-value=62  Score=16.37  Aligned_cols=18  Identities=33%  Similarity=0.516  Sum_probs=13.9

Q ss_pred             CCCEECCCCHHHHHHHHC
Q ss_conf             043020542466787632
Q gi|254781153|r   12 AGEKRVNVDDKRILTNIV   29 (30)
Q Consensus        12 agekrvnvddkriltniv   29 (30)
                      ....|++||.|.-|..||
T Consensus         8 GsPTRisvdEKsELSRIv   25 (34)
T 1suy_C            8 GTPTRISVDEKTELARIA   25 (34)
T ss_dssp             CCSSCSCCCTTCSCGGGC
T ss_pred             CCCCEEEECHHHHHHHHH
T ss_conf             896068732156899999


No 2  
>>3doa_A Fibrinogen binding protein; structural genomics, MCSG., PSI-2, protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp} (A:166-235)
Probab=8.93  E-value=84  Score=15.78  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=13.1

Q ss_pred             CCCCCCHHHCCCE--ECCCCHH
Q ss_conf             6756770110430--2054246
Q gi|254781153|r    3 NNTGLSPIQAGEK--RVNVDDK   22 (30)
Q Consensus         3 nntglspiqagek--rvnvddk   22 (30)
                      +-+|+||.-|.|-  |..+|..
T Consensus        32 ~f~GiSPliA~EI~~RAgld~~   53 (70)
T 3doa_A           32 QFEGFSPLITNEIVSRRQFMTS   53 (70)
T ss_dssp             HBTTCCHHHHHHHHTTSSSCST
T ss_pred             HCCCCCHHHHHHHHHHCCCCCC
T ss_conf             7389898999999997399962


No 3  
>>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae} (E:)
Probab=8.71  E-value=1.1e+02  Score=15.26  Aligned_cols=10  Identities=60%  Similarity=0.916  Sum_probs=7.4

Q ss_pred             CEECCCCHHH
Q ss_conf             3020542466
Q gi|254781153|r   14 EKRVNVDDKR   23 (30)
Q Consensus        14 ekrvnvddkr   23 (30)
                      .|.|||||..
T Consensus         7 akevnvddek   16 (29)
T 3ggz_E            7 AKEVNVDDEK   16 (29)
T ss_pred             CEECCCCHHH
T ss_conf             1014675066


No 4  
>>1szh_A HER-1 protein; extended 3-10 helix, LEFT-handed anti-parallel 4-helix bundle, overhand 3-helix bundle, signaling protein; 1.50A {Caenorhabditis elegans} (A:1-72)
Probab=6.25  E-value=1.7e+02  Score=14.47  Aligned_cols=11  Identities=36%  Similarity=0.761  Sum_probs=7.3

Q ss_pred             HCCCEECCCCH
Q ss_conf             10430205424
Q gi|254781153|r   11 QAGEKRVNVDD   21 (30)
Q Consensus        11 qagekrvnvdd   21 (30)
                      |.-+||.|.||
T Consensus        62 ~ep~k~~nldd   72 (72)
T 1szh_A           62 KEPKKKINLDD   72 (72)
T ss_dssp             SCGGGCCCGGG
T ss_pred             CCCCCCCCCCC
T ss_conf             48542368986


No 5  
>>1z1a_A Regulatory protein SIR1; novel fold, transcription; HET: MSE; 2.50A {Saccharomyces cerevisiae} (A:1-69)
Probab=6.14  E-value=1.6e+02  Score=14.52  Aligned_cols=19  Identities=42%  Similarity=0.487  Sum_probs=15.4

Q ss_pred             HCCCEECCCCHHHHHHHHC
Q ss_conf             1043020542466787632
Q gi|254781153|r   11 QAGEKRVNVDDKRILTNIV   29 (30)
Q Consensus        11 qagekrvnvddkriltniv   29 (30)
                      -|.||.+|-.|.|.||-.-
T Consensus        35 laeekpinpkdprlltllk   53 (69)
T 1z1a_A           35 LAEEKPINPKDPRLLTLLK   53 (69)
T ss_dssp             TTTTEEECTTCTTHHHHSC
T ss_pred             EECCCCCCCCCHHHHHHHH
T ss_conf             3013558989856875300


No 6  
>>1t3t_A Phosphoribosylformylglycinamidine synthase; PURL, FGAM synthetase, PURS, PURQ, formyl glycinamide, ligase; HET: CYG ADP; 1.90A {Salmonella typhimurium} (A:634-686,A:826-1022)
Probab=5.34  E-value=2e+02  Score=14.10  Aligned_cols=13  Identities=38%  Similarity=0.519  Sum_probs=8.9

Q ss_pred             CCCHHHHHHHHCC
Q ss_conf             5424667876329
Q gi|254781153|r   18 NVDDKRILTNIVD   30 (30)
Q Consensus        18 nvddkriltnivd   30 (30)
                      .|-.|+.|++|+|
T Consensus        20 ~V~sK~fl~~~~D   32 (250)
T 1t3t_A           20 TVAEKTFLVTIGD   32 (250)
T ss_dssp             TTSCCHHHHTTSC
T ss_pred             CCCCCCCEEEEEC
T ss_conf             5455540599835


No 7  
>>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20, GCNA; 1.40A {Streptococcus gordonii} PDB: 2epk_X 2epm_X 2epn_A* 2epo_A (X:1-83,X:402-426)
Probab=5.03  E-value=1.8e+02  Score=14.35  Aligned_cols=13  Identities=46%  Similarity=0.399  Sum_probs=9.9

Q ss_pred             CCCCCCCCHHHCC
Q ss_conf             9867567701104
Q gi|254781153|r    1 MANNTGLSPIQAG   13 (30)
Q Consensus         1 manntglspiqag   13 (30)
                      |+.-|||||-|.-
T Consensus         1 Mv~F~Gls~KQ~q   13 (108)
T 2epl_X            1 MATFLGLSSKQEK   13 (108)
T ss_dssp             -CEEESCCHHHHH
T ss_pred             CCEEECCCCCCCH
T ss_conf             9502146655404


No 8  
>>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} (A:)
Probab=4.13  E-value=1e+02  Score=15.42  Aligned_cols=19  Identities=32%  Similarity=0.473  Sum_probs=12.7

Q ss_pred             HHCCCEECCCCHHHHHHHH
Q ss_conf             1104302054246678763
Q gi|254781153|r   10 IQAGEKRVNVDDKRILTNI   28 (30)
Q Consensus        10 iqagekrvnvddkriltni   28 (30)
                      |-+|--++.+|+-|.+||.
T Consensus        13 ITsG~T~e~ID~VR~ItN~   31 (226)
T 1u7z_A           13 ITAGPTREPLDPVRYISDH   31 (226)
T ss_dssp             EEESBCEEESSSSEEEEEC
T ss_pred             EECCCCCCCCCCCCEECCC
T ss_conf             9678975666882242617


No 9  
>>2p11_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.20A {Burkholderia xenovorans LB400} (A:1-21,A:111-231)
Probab=3.54  E-value=3.1e+02  Score=13.29  Aligned_cols=13  Identities=62%  Similarity=0.800  Sum_probs=8.0

Q ss_pred             EECCCCHH-HHHHH
Q ss_conf             02054246-67876
Q gi|254781153|r   15 KRVNVDDK-RILTN   27 (30)
Q Consensus        15 krvnvddk-riltn   27 (30)
                      .-|-|||| |||+.
T Consensus        74 hYVmVDDKlRILsa   87 (142)
T 2p11_A           74 HYVXVDDKLRILAA   87 (142)
T ss_dssp             EEEEECSCHHHHHH
T ss_pred             HCCCCCCCHHHHHH
T ss_conf             55514775645899


No 10 
>>1e9y_A Urease alpha subunit; hydrolase, dodecamer, acetohydroxamic acid; HET: KCX; 3.0A {Helicobacter pylori} (A:113-191)
Probab=3.53  E-value=2.6e+02  Score=13.59  Aligned_cols=10  Identities=50%  Similarity=0.846  Sum_probs=0.0

Q ss_pred             CCCCCHHHCC
Q ss_conf             7567701104
Q gi|254781153|r    4 NTGLSPIQAG   13 (30)
Q Consensus         4 ntglspiqag   13 (30)
                      |||--|||-|
T Consensus        21 N~GDRpIQVG   30 (79)
T 1e9y_A           21 NVGDRPVQIG   30 (79)
T ss_dssp             ECSSSCEEEE
T ss_pred             CCCCCCEEEC
T ss_conf             6998750543


Done!