Query gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 30 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed Jun 1 01:32:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781153.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ggz_E Vacuolar protein-sortin 8.7 77 0.0033 15.3 0.6 10 14-23 7-16 (29) 2 2es7_A Q8ZP25_salty, putative 5.7 95 0.004 14.9 -0.2 10 1-10 1-10 (142) 3 1suy_C CIIABD, circadian clock 4.6 1.3E+02 0.0053 14.3 -0.2 19 11-29 7-25 (34) 4 2jz8_A Uncharacterized protein 3.3 2.8E+02 0.012 12.8 0.7 20 2-21 10-29 (87) 5 1syy_A Ribonucleoside-diphosph 2.8 2.8E+02 0.012 12.8 0.2 18 8-25 4-21 (346) 6 1gh9_A 8.3 kDa protein (gene M 2.7 1.8E+02 0.0077 13.6 -0.7 13 14-26 27-39 (71) 7 1u7z_A Coenzyme A biosynthesis 2.6 1.3E+02 0.0053 14.3 -1.7 18 10-27 13-30 (226) 8 1ejx_B Urease beta subunit; al 2.5 2.8E+02 0.012 12.8 -0.0 10 4-13 28-37 (101) 9 2gk4_A Conserved hypothetical 2.3 1.5E+02 0.0062 14.0 -1.7 18 10-27 8-25 (232) 10 4ubp_B Protein (urease (chain 2.2 3.3E+02 0.014 12.5 -0.0 10 4-13 34-43 (126) No 1 >3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae} Probab=8.71 E-value=77 Score=15.26 Aligned_cols=10 Identities=60% Similarity=0.916 Sum_probs=7.4 Q ss_pred CEECCCCHHH Q ss_conf 3020542466 Q gi|254781153|r 14 EKRVNVDDKR 23 (30) Q Consensus 14 ekrvnvddkr 23 (30) .|.|||||.. T Consensus 7 akevnvddek 16 (29) T 3ggz_E 7 AKEVNVDDEK 16 (29) T ss_pred CEECCCCHHH T ss_conf 1014675066 No 2 >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxin; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium LT2} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Probab=5.70 E-value=95 Score=14.87 Aligned_cols=10 Identities=50% Similarity=0.697 Sum_probs=6.5 Q ss_pred CCCCCCCCHH Q ss_conf 9867567701 Q gi|254781153|r 1 MANNTGLSPI 10 (30) Q Consensus 1 manntglspi 10 (30) |||+|-+|++ T Consensus 1 ~~~~~~~~~l 10 (142) T 2es7_A 1 MANDTPFSAL 10 (142) T ss_dssp ------CHHH T ss_pred CCCCCCCHHH T ss_conf 9989880799 No 3 >1suy_C CIIABD, circadian clock protein KAIC; X-class four helix bundle, protein-peptide complex; NMR {Thermosynechococcus elongatus bp-1} PDB: 1sv1_C Probab=4.60 E-value=1.3e+02 Score=14.33 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=13.8 Q ss_pred HCCCEECCCCHHHHHHHHC Q ss_conf 1043020542466787632 Q gi|254781153|r 11 QAGEKRVNVDDKRILTNIV 29 (30) Q Consensus 11 qagekrvnvddkriltniv 29 (30) ..-..|+.||.|.-|..|+ T Consensus 7 sgtptri~vdektel~ri~ 25 (34) T 1suy_C 7 SGTPTRISVDEKTELARIA 25 (34) T ss_dssp CCCSSCSCCCTTCSCGGGC T ss_pred CCCCCEEEECHHHHHHHHH T ss_conf 4896068732156899999 No 4 >2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str} Probab=3.27 E-value=2.8e+02 Score=12.79 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=14.4 Q ss_pred CCCCCCCHHHCCCEECCCCH Q ss_conf 86756770110430205424 Q gi|254781153|r 2 ANNTGLSPIQAGEKRVNVDD 21 (30) Q Consensus 2 anntglspiqagekrvnvdd 21 (30) +|..|..+|.-+.+++.-|. T Consensus 10 ~nd~gv~~I~V~~~~v~CdG 29 (87) T 2jz8_A 10 QNDLGYKIIEIGVKEFMCVG 29 (87) T ss_dssp CCSSCCSEEECSCSEEECCC T ss_pred CCCCCCCEEEECCEEEEECC T ss_conf 16689873897984999749 No 5 >1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 2ani_A Probab=2.76 E-value=2.8e+02 Score=12.83 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=14.4 Q ss_pred CHHHCCCEECCCCHHHHH Q ss_conf 701104302054246678 Q gi|254781153|r 8 SPIQAGEKRVNVDDKRIL 25 (30) Q Consensus 8 spiqagekrvnvddkril 25 (30) .++-.+.+++++.++||. T Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (346) T 1syy_A 4 DILDGKQKRVNLNSKRLV 21 (346) T ss_dssp SSGGGGGGSCCGGGCCSS T ss_pred CHHCCCCCCCCCCCCEEE T ss_conf 131054545671104025 No 6 >1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1 Probab=2.73 E-value=1.8e+02 Score=13.62 Aligned_cols=13 Identities=46% Similarity=0.764 Sum_probs=9.9 Q ss_pred CEECCCCHHHHHH Q ss_conf 3020542466787 Q gi|254781153|r 14 EKRVNVDDKRILT 26 (30) Q Consensus 14 ekrvnvddkrilt 26 (30) .|.+||.+.||+. T Consensus 27 GkTi~VK~RRI~~ 39 (71) T 1gh9_A 27 GRTVNVKDRRIFG 39 (71) T ss_dssp TEEEECCSSSCBS T ss_pred CCEEEHHHHHHHH T ss_conf 7532223777888 No 7 >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* Probab=2.58 E-value=1.3e+02 Score=14.33 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=10.7 Q ss_pred HHCCCEECCCCHHHHHHH Q ss_conf 110430205424667876 Q gi|254781153|r 10 IQAGEKRVNVDDKRILTN 27 (30) Q Consensus 10 iqagekrvnvddkriltn 27 (30) |-+|-.+...|+-|.+|| T Consensus 13 IT~G~T~E~ID~VR~ItN 30 (226) T 1u7z_A 13 ITAGPTREPLDPVRYISD 30 (226) T ss_dssp EEESBCEEESSSSEEEEE T ss_pred EECCCCCCCCCCCCEECC T ss_conf 966897566687136363 No 8 >1ejx_B Urease beta subunit; alpha-beta barrel, nickel metalloenzyme, temperature dependent structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.85.3.1 PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* 1fwe_B* 1fwf_B* 1fwg_B* 1fwh_B* ... Probab=2.52 E-value=2.8e+02 Score=12.81 Aligned_cols=10 Identities=60% Similarity=0.896 Sum_probs=0.0 Q ss_pred CCCCCHHHCC Q ss_conf 7567701104 Q gi|254781153|r 4 NTGLSPIQAG 13 (30) Q Consensus 4 ntglspiqag 13 (30) |||--|||-| T Consensus 28 NtGDRpIQVG 37 (101) T 1ejx_B 28 NHGDRPIQVG 37 (101) T ss_dssp ECSSSCEEEE T ss_pred ECCCCCEEEC T ss_conf 4798646870 No 9 >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics, PSI, protein structure initiative; 1.83A {Streptococcus pneumoniae TIGR4} Probab=2.30 E-value=1.5e+02 Score=14.05 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=0.0 Q ss_pred HHCCCEECCCCHHHHHHH Q ss_conf 110430205424667876 Q gi|254781153|r 10 IQAGEKRVNVDDKRILTN 27 (30) Q Consensus 10 iqagekrvnvddkriltn 27 (30) |-+|-.+...|+-|.+|| T Consensus 8 ITaG~T~E~ID~VR~ItN 25 (232) T 2gk4_A 8 VTSGGTSEAIDSVRSITN 25 (232) T ss_dssp EECSBCEEESSSSEEEEE T ss_pred EECCCCCCCCCCCCEECC T ss_conf 967897434599426570 No 10 >4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B* Probab=2.20 E-value=3.3e+02 Score=12.51 Aligned_cols=10 Identities=70% Similarity=0.989 Sum_probs=0.0 Q ss_pred CCCCCHHHCC Q ss_conf 7567701104 Q gi|254781153|r 4 NTGLSPIQAG 13 (30) Q Consensus 4 ntglspiqag 13 (30) |||--|||-| T Consensus 34 NtGDRpIQVG 43 (126) T 4ubp_B 34 NTGDRPIQVG 43 (126) T ss_dssp ECSSSCEEEE T ss_pred ECCCCCEEEC T ss_conf 4798646860 Done!