Query         gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 30
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed Jun  1 01:32:24 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781153.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3ggz_E Vacuolar protein-sortin   8.7      77  0.0033   15.3   0.6   10   14-23      7-16  (29)
  2 2es7_A Q8ZP25_salty, putative    5.7      95   0.004   14.9  -0.2   10    1-10      1-10  (142)
  3 1suy_C CIIABD, circadian clock   4.6 1.3E+02  0.0053   14.3  -0.2   19   11-29      7-25  (34)
  4 2jz8_A Uncharacterized protein   3.3 2.8E+02   0.012   12.8   0.7   20    2-21     10-29  (87)
  5 1syy_A Ribonucleoside-diphosph   2.8 2.8E+02   0.012   12.8   0.2   18    8-25      4-21  (346)
  6 1gh9_A 8.3 kDa protein (gene M   2.7 1.8E+02  0.0077   13.6  -0.7   13   14-26     27-39  (71)
  7 1u7z_A Coenzyme A biosynthesis   2.6 1.3E+02  0.0053   14.3  -1.7   18   10-27     13-30  (226)
  8 1ejx_B Urease beta subunit; al   2.5 2.8E+02   0.012   12.8  -0.0   10    4-13     28-37  (101)
  9 2gk4_A Conserved hypothetical    2.3 1.5E+02  0.0062   14.0  -1.7   18   10-27      8-25  (232)
 10 4ubp_B Protein (urease (chain    2.2 3.3E+02   0.014   12.5  -0.0   10    4-13     34-43  (126)

No 1  
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=8.71  E-value=77  Score=15.26  Aligned_cols=10  Identities=60%  Similarity=0.916  Sum_probs=7.4

Q ss_pred             CEECCCCHHH
Q ss_conf             3020542466
Q gi|254781153|r   14 EKRVNVDDKR   23 (30)
Q Consensus        14 ekrvnvddkr   23 (30)
                      .|.|||||..
T Consensus         7 akevnvddek   16 (29)
T 3ggz_E            7 AKEVNVDDEK   16 (29)
T ss_pred             CEECCCCHHH
T ss_conf             1014675066


No 2  
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxin; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium LT2} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=5.70  E-value=95  Score=14.87  Aligned_cols=10  Identities=50%  Similarity=0.697  Sum_probs=6.5

Q ss_pred             CCCCCCCCHH
Q ss_conf             9867567701
Q gi|254781153|r    1 MANNTGLSPI   10 (30)
Q Consensus         1 manntglspi   10 (30)
                      |||+|-+|++
T Consensus         1 ~~~~~~~~~l   10 (142)
T 2es7_A            1 MANDTPFSAL   10 (142)
T ss_dssp             ------CHHH
T ss_pred             CCCCCCCHHH
T ss_conf             9989880799


No 3  
>1suy_C CIIABD, circadian clock protein KAIC; X-class four helix bundle, protein-peptide complex; NMR {Thermosynechococcus elongatus bp-1} PDB: 1sv1_C
Probab=4.60  E-value=1.3e+02  Score=14.33  Aligned_cols=19  Identities=32%  Similarity=0.492  Sum_probs=13.8

Q ss_pred             HCCCEECCCCHHHHHHHHC
Q ss_conf             1043020542466787632
Q gi|254781153|r   11 QAGEKRVNVDDKRILTNIV   29 (30)
Q Consensus        11 qagekrvnvddkriltniv   29 (30)
                      ..-..|+.||.|.-|..|+
T Consensus         7 sgtptri~vdektel~ri~   25 (34)
T 1suy_C            7 SGTPTRISVDEKTELARIA   25 (34)
T ss_dssp             CCCSSCSCCCTTCSCGGGC
T ss_pred             CCCCCEEEECHHHHHHHHH
T ss_conf             4896068732156899999


No 4  
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=3.27  E-value=2.8e+02  Score=12.79  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=14.4

Q ss_pred             CCCCCCCHHHCCCEECCCCH
Q ss_conf             86756770110430205424
Q gi|254781153|r    2 ANNTGLSPIQAGEKRVNVDD   21 (30)
Q Consensus         2 anntglspiqagekrvnvdd   21 (30)
                      +|..|..+|.-+.+++.-|.
T Consensus        10 ~nd~gv~~I~V~~~~v~CdG   29 (87)
T 2jz8_A           10 QNDLGYKIIEIGVKEFMCVG   29 (87)
T ss_dssp             CCSSCCSEEECSCSEEECCC
T ss_pred             CCCCCCCEEEECCEEEEECC
T ss_conf             16689873897984999749


No 5  
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune evasion, replication; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 2ani_A
Probab=2.76  E-value=2.8e+02  Score=12.83  Aligned_cols=18  Identities=33%  Similarity=0.645  Sum_probs=14.4

Q ss_pred             CHHHCCCEECCCCHHHHH
Q ss_conf             701104302054246678
Q gi|254781153|r    8 SPIQAGEKRVNVDDKRIL   25 (30)
Q Consensus         8 spiqagekrvnvddkril   25 (30)
                      .++-.+.+++++.++||.
T Consensus         4 ~~~~~~~~~~~~~~~~~~   21 (346)
T 1syy_A            4 DILDGKQKRVNLNSKRLV   21 (346)
T ss_dssp             SSGGGGGGSCCGGGCCSS
T ss_pred             CHHCCCCCCCCCCCCEEE
T ss_conf             131054545671104025


No 6  
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=2.73  E-value=1.8e+02  Score=13.62  Aligned_cols=13  Identities=46%  Similarity=0.764  Sum_probs=9.9

Q ss_pred             CEECCCCHHHHHH
Q ss_conf             3020542466787
Q gi|254781153|r   14 EKRVNVDDKRILT   26 (30)
Q Consensus        14 ekrvnvddkrilt   26 (30)
                      .|.+||.+.||+.
T Consensus        27 GkTi~VK~RRI~~   39 (71)
T 1gh9_A           27 GRTVNVKDRRIFG   39 (71)
T ss_dssp             TEEEECCSSSCBS
T ss_pred             CCEEEHHHHHHHH
T ss_conf             7532223777888


No 7  
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=2.58  E-value=1.3e+02  Score=14.33  Aligned_cols=18  Identities=33%  Similarity=0.540  Sum_probs=10.7

Q ss_pred             HHCCCEECCCCHHHHHHH
Q ss_conf             110430205424667876
Q gi|254781153|r   10 IQAGEKRVNVDDKRILTN   27 (30)
Q Consensus        10 iqagekrvnvddkriltn   27 (30)
                      |-+|-.+...|+-|.+||
T Consensus        13 IT~G~T~E~ID~VR~ItN   30 (226)
T 1u7z_A           13 ITAGPTREPLDPVRYISD   30 (226)
T ss_dssp             EEESBCEEESSSSEEEEE
T ss_pred             EECCCCCCCCCCCCEECC
T ss_conf             966897566687136363


No 8  
>1ejx_B Urease beta subunit; alpha-beta barrel, nickel metalloenzyme, temperature dependent structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.85.3.1 PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* 1fwe_B* 1fwf_B* 1fwg_B* 1fwh_B* ...
Probab=2.52  E-value=2.8e+02  Score=12.81  Aligned_cols=10  Identities=60%  Similarity=0.896  Sum_probs=0.0

Q ss_pred             CCCCCHHHCC
Q ss_conf             7567701104
Q gi|254781153|r    4 NTGLSPIQAG   13 (30)
Q Consensus         4 ntglspiqag   13 (30)
                      |||--|||-|
T Consensus        28 NtGDRpIQVG   37 (101)
T 1ejx_B           28 NHGDRPIQVG   37 (101)
T ss_dssp             ECSSSCEEEE
T ss_pred             ECCCCCEEEC
T ss_conf             4798646870


No 9  
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics, PSI, protein structure initiative; 1.83A {Streptococcus pneumoniae TIGR4}
Probab=2.30  E-value=1.5e+02  Score=14.05  Aligned_cols=18  Identities=28%  Similarity=0.488  Sum_probs=0.0

Q ss_pred             HHCCCEECCCCHHHHHHH
Q ss_conf             110430205424667876
Q gi|254781153|r   10 IQAGEKRVNVDDKRILTN   27 (30)
Q Consensus        10 iqagekrvnvddkriltn   27 (30)
                      |-+|-.+...|+-|.+||
T Consensus         8 ITaG~T~E~ID~VR~ItN   25 (232)
T 2gk4_A            8 VTSGGTSEAIDSVRSITN   25 (232)
T ss_dssp             EECSBCEEESSSSEEEEE
T ss_pred             EECCCCCCCCCCCCEECC
T ss_conf             967897434599426570


No 10 
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=2.20  E-value=3.3e+02  Score=12.51  Aligned_cols=10  Identities=70%  Similarity=0.989  Sum_probs=0.0

Q ss_pred             CCCCCHHHCC
Q ss_conf             7567701104
Q gi|254781153|r    4 NTGLSPIQAG   13 (30)
Q Consensus         4 ntglspiqag   13 (30)
                      |||--|||-|
T Consensus        34 NtGDRpIQVG   43 (126)
T 4ubp_B           34 NTGDRPIQVG   43 (126)
T ss_dssp             ECSSSCEEEE
T ss_pred             ECCCCCEEEC
T ss_conf             4798646860


Done!