BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781153|ref|YP_003065566.1| hypothetical protein
CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62]
(30 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040830|gb|ACT57626.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 30
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/30 (100%), Positives = 30/30 (100%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRILTNIVD 30
MANNTGLSPIQAGEKRVNVDDKRILTNIVD
Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRILTNIVD 30
>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 352
Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/25 (96%), Positives = 25/25 (100%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRIL 25
MANNTGLSPIQAGEKRVNVDDKR+L
Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRML 25
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040522|gb|ACT57318.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040641|gb|ACT57437.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
Liberibacter asiaticus str. psy62]
Length = 352
Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/25 (96%), Positives = 25/25 (100%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRIL 25
MANNTGLSPIQAGEKRVNVDDKR+L
Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRML 25
>gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040830|gb|ACT57626.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 30
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/30 (100%), Positives = 30/30 (100%)
Query: 1 MANNTGLSPIQAGEKRVNVDDKRILTNIVD 30
MANNTGLSPIQAGEKRVNVDDKRILTNIVD
Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRILTNIVD 30
>gi|72163401|ref|YP_291058.1| ribonucleotide-diphosphate reductase subunit beta [Thermobifida
fusca YX]
gi|71917133|gb|AAZ57035.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
Length = 354
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 3 NNTGLSPIQAGEKRVNVDDKRILTNIVD 30
N TGL IQ+G RV+V+DKR++ + D
Sbjct: 5 NTTGLGEIQSGAARVDVEDKRMINSRAD 32
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.310 0.137 0.387
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 579,410,175
Number of Sequences: 14124377
Number of extensions: 9495758
Number of successful extensions: 8882
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8877
Number of HSP's gapped (non-prelim): 5
length of query: 30
length of database: 4,842,793,630
effective HSP length: 5
effective length of query: 25
effective length of database: 4,772,171,745
effective search space: 119304293625
effective search space used: 119304293625
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 75 (33.5 bits)