RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781153|ref|YP_003065566.1| hypothetical protein
CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62]
         (30 letters)



>gnl|CDD|180886 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit
          beta; Validated.
          Length = 369

 Score = 32.7 bits (75), Expect = 0.024
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 1  MANNTGLSPIQAGEKRVNVDDKRILTNIVD 30
          +A  TGL  ++ G  RVNVDDKRI+    D
Sbjct: 18 LAVATGLEELEGGAARVNVDDKRIINCRAD 47


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.312    0.132    0.353 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 441,851
Number of extensions: 10325
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 30
Length of database: 5,994,473
Length adjustment: 5
Effective length of query: 25
Effective length of database: 5,886,433
Effective search space: 147160825
Effective search space used: 147160825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.0 bits)