BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781153|ref|YP_003065566.1| hypothetical protein
CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62]
         (30 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 30

 Score = 62.0 bits (149), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 1  MANNTGLSPIQAGEKRVNVDDKRILTNIVD 30
          MANNTGLSPIQAGEKRVNVDDKRILTNIVD
Sbjct: 1  MANNTGLSPIQAGEKRVNVDDKRILTNIVD 30


>gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 54.7 bits (130), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1  MANNTGLSPIQAGEKRVNVDDKRIL 25
          MANNTGLSPIQAGEKRVNVDDKR+L
Sbjct: 1  MANNTGLSPIQAGEKRVNVDDKRML 25


>gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 352

 Score = 54.7 bits (130), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1  MANNTGLSPIQAGEKRVNVDDKRIL 25
          MANNTGLSPIQAGEKRVNVDDKR+L
Sbjct: 1  MANNTGLSPIQAGEKRVNVDDKRML 25


>537021.9.peg.74_1 
          Length = 196

 Score = 54.3 bits (129), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/25 (96%), Positives = 25/25 (100%)

Query: 1  MANNTGLSPIQAGEKRVNVDDKRIL 25
          MANNTGLSPIQAGEKRVNVDDKR+L
Sbjct: 1  MANNTGLSPIQAGEKRVNVDDKRML 25


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.312    0.132    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,747
Number of Sequences: 1233
Number of extensions: 370
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 30
length of database: 328,796
effective HSP length: 5
effective length of query: 25
effective length of database: 322,631
effective search space:  8065775
effective search space used:  8065775
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.5 bits)
S2: 31 (16.5 bits)