Query gi|254781154|ref|YP_003065567.1| hypothetical protein CLIBASIA_05305 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 65
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 22:31:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781154.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2i6e_A Hypothetical protein; 35.4 13 0.00039 19.1 0.8 17 10-26 59-75 (110)
2 >2p0o_A Hypothetical protein D 16.1 95 0.0028 14.9 2.2 28 7-34 30-57 (76)
3 >2czl_A Hypothetical protein T 13.2 77 0.0023 15.4 1.0 20 11-30 59-78 (91)
4 >1x7f_A Outer surface protein; 10.6 1.6E+02 0.0046 13.9 2.3 28 7-34 57-84 (118)
5 >3crv_A XPD/RAD3 related DNA h 8.8 1.3E+02 0.0038 14.3 1.0 20 8-27 168-189 (200)
6 >2ch8_A BARF1, P33, 33 kDa ear 8.3 1.9E+02 0.0057 13.4 2.3 19 1-19 25-43 (104)
7 >2vsf_A XPD, DNA repair helica 8.0 1.7E+02 0.005 13.7 1.3 23 8-30 164-186 (212)
8 >2vl7_A XPD; helicase, unknown 5.4 2.8E+02 0.0084 12.6 1.9 20 8-27 163-182 (194)
9 >2nxo_A Hypothetical protein S 5.3 1.7E+02 0.005 13.7 0.1 14 11-24 62-75 (98)
10 >1k0i_A P-hydroxybenzoate hydr 5.3 2E+02 0.006 13.3 0.5 12 11-22 27-38 (102)
No 1
>>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} (A:90-199)
Probab=35.41 E-value=13 Score=19.09 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=13.0
Q ss_pred CEEEEEEECHHHCCHHE
Q ss_conf 20089985121000121
Q gi|254781154|r 10 DFGVVLIGDKAFNTYRS 26 (65)
Q Consensus 10 dfgvvligdkafntyrs 26 (65)
-=++.||||+|...+-+
T Consensus 59 ~da~LlIGD~AL~~~~~ 75 (110)
T 2i6e_A 59 YDGVLRIGDDALREWYG 75 (110)
T ss_dssp CSEEEEESHHHHHHHHH
T ss_pred CCEEEEECHHHHHHHHH
T ss_conf 78677614277776541
No 2
>>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583} (A:269-344)
Probab=16.09 E-value=95 Score=14.92 Aligned_cols=28 Identities=21% Similarity=0.545 Sum_probs=24.5
Q ss_pred EECCEEEEEEECHHHCCHHEEEEEEEEC
Q ss_conf 3102008998512100012157888861
Q gi|254781154|r 7 LQRDFGVVLIGDKAFNTYRSQLRILITD 34 (65)
Q Consensus 7 lqrdfgvvligdkafntyrsqlrilitd 34 (65)
-.|.-|-|+|+...|.-|...|.|..+|
T Consensus 30 ~~r~~GdItIdN~~ygRY~GElQI~l~d 57 (76)
T 2p0o_A 30 EARPVGTVTIDNEKYGRYXGEIQVTLVD 57 (76)
T ss_dssp CCBCTTEEEEECGGGGGGTTCEEEESSC
T ss_pred CCCCCCEEEEECCCCCCCHHEHHEECCC
T ss_conf 7542762999579866540032121245
No 3
>>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermophilic bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus HB8} (A:81-171)
Probab=13.16 E-value=77 Score=15.37 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=13.7
Q ss_pred EEEEEEECHHHCCHHEEEEE
Q ss_conf 00899851210001215788
Q gi|254781154|r 11 FGVVLIGDKAFNTYRSQLRI 30 (65)
Q Consensus 11 fgvvligdkafntyrsqlri 30 (65)
=+.++|||.||.-.+..+..
T Consensus 59 DagLlIgD~al~~~~~~~~~ 78 (91)
T 2czl_A 59 EAGLIIHESRFTYPRYGLVQ 78 (91)
T ss_dssp SEEEECTTHHHHGGGGTCEE
T ss_pred CCEEECCCHHHHHHHCCCCE
T ss_conf 85165084075677336504
No 4
>>1x7f_A Outer surface protein; structural genomics, unknown function, protein structure initiative, MCSG, PSI; 2.30A {Bacillus cereus atcc 14579} (A:268-385)
Probab=10.57 E-value=1.6e+02 Score=13.87 Aligned_cols=28 Identities=29% Similarity=0.764 Sum_probs=24.8
Q ss_pred EECCEEEEEEECHHHCCHHEEEEEEEEC
Q ss_conf 3102008998512100012157888861
Q gi|254781154|r 7 LQRDFGVVLIGDKAFNTYRSQLRILITD 34 (65)
Q Consensus 7 lqrdfgvvligdkafntyrsqlrilitd 34 (65)
.+|.-|-|+|....+.-|...|.|..+|
T Consensus 57 ~~r~~G~ItIdN~~ygrY~GElqI~~~d 84 (118)
T 1x7f_A 57 VLQERGQVVIGNNSFGKYKGELQIILKE 84 (118)
T ss_dssp CCBCTTEEEEECGGGGGGTTCEEEECSC
T ss_pred CCCCCCEEEEECCCCCCCCCEEEEECCC
T ss_conf 7765883999779876753362266144
No 5
>>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* (A:352-551)
Probab=8.79 E-value=1.3e+02 Score=14.27 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=13.2
Q ss_pred ECCEEEEEEECHHHCC--HHEE
Q ss_conf 1020089985121000--1215
Q gi|254781154|r 8 QRDFGVVLIGDKAFNT--YRSQ 27 (65)
Q Consensus 8 qrdfgvvligdkafnt--yrsq 27 (65)
..|+|+++|-|+-|.+ |+++
T Consensus 168 ~~D~g~i~ilD~R~~~~~~~~~ 189 (200)
T 3crv_A 168 VNDKCNVWLLDKRFESLYWKKN 189 (200)
T ss_dssp TTCEEEEEEESGGGGSHHHHHH
T ss_pred CCCEEEEEEECCCCCCCHHHHH
T ss_conf 8877999999178898165534
No 6
>>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} (A:1-104)
Probab=8.30 E-value=1.9e+02 Score=13.41 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=15.0
Q ss_pred CCCEEEEECCEEEEEEECH
Q ss_conf 9600243102008998512
Q gi|254781154|r 1 MTSWLKLQRDFGVVLIGDK 19 (65)
Q Consensus 1 mtswlklqrdfgvvligdk 19 (65)
|.+|.||...-.-+|||.-
T Consensus 25 ~v~wfklgpgeeq~ligrm 43 (104)
T 2ch8_A 25 EVSWFKLGPGEEQVLIGRM 43 (104)
T ss_dssp EEEEEEECTTSCEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEC
T ss_conf 8999994999735999981
No 7
>>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum} (A:391-602)
Probab=7.96 E-value=1.7e+02 Score=13.69 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=19.1
Q ss_pred ECCEEEEEEECHHHCCHHEEEEE
Q ss_conf 10200899851210001215788
Q gi|254781154|r 8 QRDFGVVLIGDKAFNTYRSQLRI 30 (65)
Q Consensus 8 qrdfgvvligdkafntyrsqlri 30 (65)
..|+|++++-|+.|..|++.|.-
T Consensus 164 ~~D~g~iillD~R~~~~~~~lp~ 186 (212)
T 2vsf_A 164 AEDTGACVILDKRAGQFRKFIPD 186 (212)
T ss_dssp SSCCEEEEEECTTCGGGGTTSTT
T ss_pred CCCEEEEEEEECCHHHHHHHCCC
T ss_conf 98679999997856889977875
No 8
>>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} (A:347-540)
Probab=5.37 E-value=2.8e+02 Score=12.60 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=15.3
Q ss_pred ECCEEEEEEECHHHCCHHEE
Q ss_conf 10200899851210001215
Q gi|254781154|r 8 QRDFGVVLIGDKAFNTYRSQ 27 (65)
Q Consensus 8 qrdfgvvligdkafntyrsq 27 (65)
..|+|++++-|+-|..|...
T Consensus 163 ~~D~g~i~llD~R~~~~~~~ 182 (194)
T 2vl7_A 163 PNDYVKIYLCDSRYREYFAD 182 (194)
T ss_dssp TTCCCEEEEESGGGGGGTTT
T ss_pred CCCEEEEEEEECCHHHHHCC
T ss_conf 88779999992686654211
No 9
>>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} (A:85-182)
Probab=5.29 E-value=1.7e+02 Score=13.69 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=9.0
Q ss_pred EEEEEEECHHHCCH
Q ss_conf 00899851210001
Q gi|254781154|r 11 FGVVLIGDKAFNTY 24 (65)
Q Consensus 11 fgvvligdkafnty 24 (65)
=+.++|||.|....
T Consensus 62 da~LlIgD~AL~~~ 75 (98)
T 2nxo_A 62 DAAVLIGDAALRAN 75 (98)
T ss_dssp -CCEEEHHHHHHHH
T ss_pred CEEEEECCCHHHHH
T ss_conf 87999465076899
No 10
>>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, mechanism, structure, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} (A:167-181,A:268-354)
Probab=5.27 E-value=2e+02 Score=13.31 Aligned_cols=12 Identities=33% Similarity=0.260 Sum_probs=8.7
Q ss_pred EEEEEEECHHHC
Q ss_conf 008998512100
Q gi|254781154|r 11 FGVVLIGDKAFN 22 (65)
Q Consensus 11 fgvvligdkafn 22 (65)
=+++||||-|.-
T Consensus 27 grvvLiGDAAH~ 38 (102)
T 1k0i_A 27 GRLFLAGDAAHI 38 (102)
T ss_dssp TTEEECGGGTEE
T ss_pred CCEEEECCCCCC
T ss_conf 867760543357
Done!