Query gi|254781154|ref|YP_003065567.1| hypothetical protein CLIBASIA_05305 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 65
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 02:09:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781154.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g1j_A Integron cassette prote 23.6 5.2 0.00022 20.3 -2.2 43 6-48 6-66 (93)
2 3crv_A XPD/RAD3 related DNA he 9.9 34 0.0014 16.4 -0.9 13 10-22 521-533 (551)
3 2vl7_A XPD; helicase, unknown 8.6 78 0.0033 14.6 0.6 19 9-27 510-528 (540)
4 3kts_A Glycerol uptake operon 7.4 60 0.0025 15.2 -0.5 41 19-60 24-64 (192)
5 2vsf_A XPD, DNA repair helicas 7.1 1.4E+02 0.0058 13.4 1.3 22 8-29 554-575 (602)
6 2czl_A Hypothetical protein TT 7.1 1.1E+02 0.0046 13.9 0.7 14 12-25 140-153 (272)
7 2qap_A Fructose-1,6-bisphospha 5.8 52 0.0022 15.5 -1.5 37 23-60 26-65 (391)
8 2i6e_A Hypothetical protein; N 5.7 1.6E+02 0.0066 13.1 0.9 15 11-25 149-163 (301)
9 2akz_A Gamma enolase, neural; 4.7 1E+02 0.0043 14.0 -0.6 26 3-28 302-327 (439)
10 2ohw_A YUEI protein; structura 4.5 2.3E+02 0.0098 12.3 1.4 17 7-23 100-116 (133)
No 1
>3g1j_A Integron cassette protein; novel, oyster POND, woodshole, USA, structural genomics, unknown function PSI-2, protein structure initiative; 1.70A {Vibrio cholerae}
Probab=23.64 E-value=5.2 Score=20.33 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=28.4
Q ss_pred EEECCEEEEEEEC-----HHHCCHHEEE-------------EEEEECCHHHHHHCCCCCCC
Q ss_conf 4310200899851-----2100012157-------------88886152553307532000
Q gi|254781154|r 6 KLQRDFGVVLIGD-----KAFNTYRSQL-------------RILITDNLSALISSDKNITE 48 (65)
Q Consensus 6 klqrdfgvvligd-----kafntyrsql-------------rilitdnlsalissdknite 48 (65)
-||..||+.--|| |+|..|+.+- -..-.+..+-.||+|||+..
T Consensus 6 ~~~~~~g~LysGdy~kVik~FkDy~gfth~~GE~~yFa~~yFLpyE~gytLyiskdkn~~~ 66 (93)
T 3g1j_A 6 YLQSEYGVLKAGQCYKVVRSFRDYRNINYERGDVMRFLGSNFVPYESGLSLFFDKNGSERQ 66 (93)
T ss_dssp GSBSEETTEETTCEEEECSCEECTTCCEECTTCEEEEEEEEEETTTTEEEEEEEETTEEEE
T ss_pred HHHHHCCEEECCCEEEEHHHHHHCCCCEECCCCEEEEEEEEECEECCCEEEEEECCCCEEE
T ss_conf 7676507742286888601245307933217827998885402206742999956998826
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=9.87 E-value=34 Score=16.38 Aligned_cols=13 Identities=38% Similarity=0.348 Sum_probs=4.9
Q ss_pred CEEEEEEECHHHC
Q ss_conf 2008998512100
Q gi|254781154|r 10 DFGVVLIGDKAFN 22 (65)
Q Consensus 10 dfgvvligdkafn 22 (65)
|+|+++|-|+-|.
T Consensus 521 D~g~i~ilD~R~~ 533 (551)
T 3crv_A 521 DKCNVWLLDKRFE 533 (551)
T ss_dssp CEEEEEEESGGGG
T ss_pred CEEEEEEECCCCC
T ss_conf 7799999878989
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=8.62 E-value=78 Score=14.59 Aligned_cols=19 Identities=16% Similarity=0.441 Sum_probs=9.8
Q ss_pred CCEEEEEEECHHHCCHHEE
Q ss_conf 0200899851210001215
Q gi|254781154|r 9 RDFGVVLIGDKAFNTYRSQ 27 (65)
Q Consensus 9 rdfgvvligdkafntyrsq 27 (65)
.|+|++++-|+-|..|..+
T Consensus 510 ~D~g~v~llD~R~~~~~~~ 528 (540)
T 2vl7_A 510 NDYVKIYLCDSRYREYFAD 528 (540)
T ss_dssp TCCCEEEEESGGGGGGTTT
T ss_pred CCEEEEEEEECCHHHHHHH
T ss_conf 8879999997465330544
No 4
>3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=7.44 E-value=60 Score=15.16 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.6
Q ss_pred HHHCCHHEEEEEEEECCHHHHHHCCCCCCCCCCCCEEEEEEE
Q ss_conf 210001215788886152553307532000022225887653
Q gi|254781154|r 19 KAFNTYRSQLRILITDNLSALISSDKNITESGKEGIVKMDLS 60 (65)
Q Consensus 19 kafntyrsqlrilitdnlsalissdknitesgkegivkmdls 60 (65)
++.++ .++.-+|..-++..|-+--+.+.+.||..+|.+||-
T Consensus 24 ~al~s-~~~~iflL~g~I~~l~~iv~~~k~~gK~vfVHiDLI 64 (192)
T 3kts_A 24 KILEL-DLTYMVMLETHVAQLKALVKYAQAGGKKVLLHADLV 64 (192)
T ss_dssp HHTTS-SCCEEEECSEETTTHHHHHHHHHHTTCEEEEEGGGE
T ss_pred HHHCC-CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 99758-998999953718779999999998799899985316
No 5
>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum}
Probab=7.14 E-value=1.4e+02 Score=13.39 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=15.3
Q ss_pred ECCEEEEEEECHHHCCHHEEEE
Q ss_conf 1020089985121000121578
Q gi|254781154|r 8 QRDFGVVLIGDKAFNTYRSQLR 29 (65)
Q Consensus 8 qrdfgvvligdkafntyrsqlr 29 (65)
..|+|+++|-|+-|.-|++.|.
T Consensus 554 ~~D~g~i~llD~R~~~~~~~lp 575 (602)
T 2vsf_A 554 AEDTGACVILDKRAGQFRKFIP 575 (602)
T ss_dssp SSCCEEEEEECTTCGGGGTTST
T ss_pred CCCEEEEEEEECCHHHHHHHCC
T ss_conf 9877999999885588997788
No 6
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus HB8} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=7.09 E-value=1.1e+02 Score=13.89 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=9.5
Q ss_pred EEEEEECHHHCCHH
Q ss_conf 08998512100012
Q gi|254781154|r 12 GVVLIGDKAFNTYR 25 (65)
Q Consensus 12 gvvligdkafntyr 25 (65)
+.++|||.|+.-.+
T Consensus 140 a~LlIGD~Al~~~~ 153 (272)
T 2czl_A 140 AGLIIHESRFTYPR 153 (272)
T ss_dssp EEEECTTHHHHGGG
T ss_pred EEEECCHHHHHHHH
T ss_conf 23660717766663
No 7
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, C-teminal tail, lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A* 2qdh_A* 1epx_A 1f2j_A
Probab=5.80 E-value=52 Score=15.45 Aligned_cols=37 Identities=41% Similarity=0.467 Sum_probs=17.9
Q ss_pred CHHEEEEE---EEECCHHHHHHCCCCCCCCCCCCEEEEEEE
Q ss_conf 01215788---886152553307532000022225887653
Q gi|254781154|r 23 TYRSQLRI---LITDNLSALISSDKNITESGKEGIVKMDLS 60 (65)
Q Consensus 23 tyrsqlri---litdnlsalissdknitesgkegivkmdls 60 (65)
+-++|+++ +-++--+.|...-+.|...|| ||.-+|-|
T Consensus 26 ~~~~~~~~~~~~~~~~~~eL~~~a~~~~~~GK-GiLAADES 65 (391)
T 2qap_A 26 VLQSQLPAYNRLKTPYESELIATVKKLTTPGK-GLLAADES 65 (391)
T ss_dssp EEGGGSGGGCSCCCTTHHHHHHHHHHHTCTTC-EEEEECCC
T ss_pred HHHHCCCCHHCCCCHHHHHHHHHHHHHCCCCC-EEEEECCC
T ss_conf 12221653010177689999999999806998-69971588
No 8
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=5.71 E-value=1.6e+02 Score=13.11 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=10.1
Q ss_pred EEEEEEECHHHCCHH
Q ss_conf 008998512100012
Q gi|254781154|r 11 FGVVLIGDKAFNTYR 25 (65)
Q Consensus 11 fgvvligdkafntyr 25 (65)
=++++|||.|+....
T Consensus 149 da~LlIGD~AL~~~~ 163 (301)
T 2i6e_A 149 DGVLRIGDDALREWY 163 (301)
T ss_dssp SEEEEESHHHHHHHH
T ss_pred CEEEECCHHHHHHHH
T ss_conf 868972789876433
No 9
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=4.69 E-value=1e+02 Score=14.04 Aligned_cols=26 Identities=23% Similarity=0.578 Sum_probs=20.3
Q ss_pred CEEEEECCEEEEEEECHHHCCHHEEE
Q ss_conf 00243102008998512100012157
Q gi|254781154|r 3 SWLKLQRDFGVVLIGDKAFNTYRSQL 28 (65)
Q Consensus 3 swlklqrdfgvvligdkafntyrsql 28 (65)
+|-+|+..+|+-++||..|.|-...+
T Consensus 302 gw~~lt~~lg~~IvGDDl~vTn~~rl 327 (439)
T 2akz_A 302 AWSKFTANVGIQIVGDDLTVTNPKRI 327 (439)
T ss_dssp HHHHHHHTCSSEEEESTTTTTCHHHH
T ss_pred HHHHHHHHHCCEEECCCCCCCCHHHH
T ss_conf 99999997097786530035568999
No 10
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=4.48 E-value=2.3e+02 Score=12.27 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=11.0
Q ss_pred EECCEEEEEEECHHHCC
Q ss_conf 31020089985121000
Q gi|254781154|r 7 LQRDFGVVLIGDKAFNT 23 (65)
Q Consensus 7 lqrdfgvvligdkafnt 23 (65)
.+-+||+|+..|.|.|-
T Consensus 100 ~~t~~gLVv~a~~Avn~ 116 (133)
T 2ohw_A 100 FHTPLGIVIAADIAVNR 116 (133)
T ss_dssp SCCSEEEEEEESSCCCC
T ss_pred CCCCEEEEEECCCCCCC
T ss_conf 78982899974862157
Done!