RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781154|ref|YP_003065567.1| hypothetical protein CLIBASIA_05305 [Candidatus Liberibacter asiaticus str. psy62] (65 letters) >gnl|CDD|35960 KOG0741, KOG0741, KOG0741, AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]. Length = 744 Score = 24.2 bits (52), Expect = 7.2 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 18 DKAF-NTYRSQLRILITDNLSALI 40 K F + Y+S L I++ D++ L+ Sbjct: 588 KKIFEDAYKSPLSIIVVDDIERLL 611 >gnl|CDD|153273 cd07589, BAR_DNMBP, The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease. Length = 195 Score = 23.8 bits (52), Expect = 9.5 Identities = 10/29 (34%), Positives = 18/29 (62%) Query: 13 VVLIGDKAFNTYRSQLRILITDNLSALIS 41 V I KA ++S++R L+ + LS+L+ Sbjct: 71 VRGISSKALPEFKSRVRKLVIEPLSSLLK 99 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.136 0.379 Gapped Lambda K H 0.267 0.0713 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 711,373 Number of extensions: 25382 Number of successful extensions: 62 Number of sequences better than 10.0: 1 Number of HSP's gapped: 62 Number of HSP's successfully gapped: 11 Length of query: 65 Length of database: 6,263,737 Length adjustment: 37 Effective length of query: 28 Effective length of database: 5,464,204 Effective search space: 152997712 Effective search space used: 152997712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.1 bits)