RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781154|ref|YP_003065567.1| hypothetical protein
CLIBASIA_05305 [Candidatus Liberibacter asiaticus str. psy62]
         (65 letters)



>gnl|CDD|149284 pfam08144, CPL, CPL (NUC119) domain.  This C terminal domain is
           fund in Penguin-like proteins associated with Pumilio
           like repeats.
          Length = 148

 Score = 24.8 bits (54), Expect = 5.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 36  LSALISSDKNITESGKEGIV 55
           L  LI  DK   E+GKEG  
Sbjct: 126 LKWLIEQDKKKKENGKEGCF 145


>gnl|CDD|182779 PRK10852, PRK10852, thiosulfate transporter subunit; Provisional.
          Length = 338

 Score = 24.7 bits (54), Expect = 5.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 43  DKNITESGKEGIVKMDLSYVYT 64
           DKN+  +G E   K  L+Y+Y+
Sbjct: 252 DKNVQANGTEKAAKAYLNYLYS 273


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0734    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 993,321
Number of extensions: 44397
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 10
Length of query: 65
Length of database: 5,994,473
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,216,585
Effective search space: 151280965
Effective search space used: 151280965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)