Query gi|254781155|ref|YP_003065568.1| hypothetical protein CLIBASIA_05310 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 35 No_of_seqs 2 out of 4 Neff 1.3 Searched_HMMs 13730 Date Wed Jun 1 11:31:10 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781155.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 19.6 24 0.0017 15.8 1.8 25 1-25 22-49 (51) 2 d2crna1 a.5.2.1 (A:8-58) Suppr 15.7 42 0.003 14.7 2.3 26 1-26 12-40 (51) 3 d1whca_ a.5.2.1 (A:) UBA/UBX 3 13.2 50 0.0037 14.2 2.2 26 1-26 19-47 (64) 4 d1veka_ a.5.2.1 (A:) Ubiquitin 7.0 90 0.0066 13.0 1.9 26 1-26 39-67 (84) 5 d2p6ra3 c.37.1.19 (A:1-202) He 6.4 70 0.0051 13.5 0.7 28 1-28 21-62 (202) 6 d1rsoa_ a.194.1.1 (A:) Presyna 4.3 1.4E+02 0.01 12.1 1.6 17 18-34 28-44 (60) 7 d1s2ma1 c.37.1.19 (A:46-251) P 3.9 1.5E+02 0.011 12.0 1.8 30 1-30 19-62 (206) 8 d1veca_ c.37.1.19 (A:) DEAD bo 3.4 1.6E+02 0.012 11.7 1.7 30 1-30 21-64 (206) 9 d1wj7a1 a.5.2.1 (A:8-98) Ubiqu 3.4 1.7E+02 0.012 11.7 1.0 13 4-16 11-23 (91) 10 d1v54h_ a.51.1.1 (H:) Cytochro 3.3 1.1E+02 0.0079 12.6 -0.2 10 4-13 13-22 (79) No 1 >d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Probab=19.56 E-value=24 Score=15.84 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=14.9 Q ss_pred CCCCCHHHHHHHHHHCC---CHHHHHHH Q ss_conf 97664035666764254---32699999 Q gi|254781155|r 1 MGFKKPYQNQIEHAQGG---RKTTAWLV 25 (35) Q Consensus 1 ~gfkkp~q~qi~~a~gg---~~~t~wlv 25 (35) |||....-..--.+.|+ -.+.+||. T Consensus 22 MGF~~~~a~~AL~~t~n~~ve~A~~WLl 49 (51) T d2cpwa1 22 MGFPRARAQKALASTGGRSVQTACDWLF 49 (51) T ss_dssp HTCCHHHHHHHHHHTTTSCHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 5999999999999977999999999997 No 2 >d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} Probab=15.72 E-value=42 Score=14.65 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=15.9 Q ss_pred CCCCCHHHHHHHHHHCC---CHHHHHHHH Q ss_conf 97664035666764254---326999999 Q gi|254781155|r 1 MGFKKPYQNQIEHAQGG---RKTTAWLVH 26 (35) Q Consensus 1 ~gfkkp~q~qi~~a~gg---~~~t~wlvh 26 (35) |||....--.--++.|+ -.+++||.. T Consensus 12 MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~ 40 (51) T d2crna1 12 MGFPVHTALKALAATGRKTAEEALAWLHD 40 (51) T ss_dssp TSCCHHHHHHHHHHHTSCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 69999999999999779999999999998 No 3 >d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Probab=13.17 E-value=50 Score=14.24 Aligned_cols=26 Identities=23% Similarity=0.515 Sum_probs=17.4 Q ss_pred CCCCCHHHHHHHHHHCC---CHHHHHHHH Q ss_conf 97664035666764254---326999999 Q gi|254781155|r 1 MGFKKPYQNQIEHAQGG---RKTTAWLVH 26 (35) Q Consensus 1 ~gfkkp~q~qi~~a~gg---~~~t~wlvh 26 (35) |||-+..-.+--++.++ -++.+||.. T Consensus 19 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~ 47 (64) T d1whca_ 19 MGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64) T ss_dssp TTCCHHHHHHHHHHHTSCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 59999999999999489999999999998 No 4 >d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=7.01 E-value=90 Score=13.02 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=14.2 Q ss_pred CCCCCHHHHHHHHHHCC---CHHHHHHHH Q ss_conf 97664035666764254---326999999 Q gi|254781155|r 1 MGFKKPYQNQIEHAQGG---RKTTAWLVH 26 (35) Q Consensus 1 ~gfkkp~q~qi~~a~gg---~~~t~wlvh 26 (35) |||-+-.--.--++.+. -++.+||.. T Consensus 39 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~ 67 (84) T d1veka_ 39 MGFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84) T ss_dssp HTCCHHHHHHHHHHTTTCCHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 59999999999999769999999999998 No 5 >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Probab=6.39 E-value=70 Score=13.54 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=16.5 Q ss_pred CCCCCHHHHHHH--------------HHHCCCHHHHHHHHHH Q ss_conf 976640356667--------------6425432699999999 Q gi|254781155|r 1 MGFKKPYQNQIE--------------HAQGGRKTTAWLVHIF 28 (35) Q Consensus 1 ~gfkkp~q~qi~--------------~a~gg~~~t~wlvhif 28 (35) .||++|+.+|.+ -.-|.|||+..+.-|. T Consensus 21 ~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~ 62 (202) T d2p6ra3 21 EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMV 62 (202) T ss_dssp C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH T ss_conf 699999999999999998499989986899851178999999 No 6 >d1rsoa_ a.194.1.1 (A:) Presynaptic protein sap97 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=4.26 E-value=1.4e+02 Score=12.12 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=12.6 Q ss_pred CHHHHHHHHHHHHHHHC Q ss_conf 32699999999976522 Q gi|254781155|r 18 RKTTAWLVHIFKKNLME 34 (35) Q Consensus 18 ~~~t~wlvhifk~n~me 34 (35) |.+-.-+..|||.|+|. T Consensus 28 r~~iervI~iFkS~LF~ 44 (60) T d1rsoa_ 28 RSSIERVISIFQSNLFQ 44 (60) T ss_dssp HHHHHHHHHHHHCHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999999 No 7 >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=3.90 E-value=1.5e+02 Score=11.96 Aligned_cols=30 Identities=37% Similarity=0.551 Sum_probs=20.3 Q ss_pred CCCCCHHHHHHH--------------HHHCCCHHHHHHHHHHHH Q ss_conf 976640356667--------------642543269999999997 Q gi|254781155|r 1 MGFKKPYQNQIE--------------HAQGGRKTTAWLVHIFKK 30 (35) Q Consensus 1 ~gfkkp~q~qi~--------------~a~gg~~~t~wlvhifk~ 30 (35) +||+.|..-|-. --.|.|||.++++-+..+ T Consensus 19 ~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~ 62 (206) T d1s2ma1 19 AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62 (206) T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCC T ss_conf 79999999999999999869988986587621444430331100 No 8 >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.45 E-value=1.6e+02 Score=11.74 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=20.8 Q ss_pred CCCCCHHHHHHH---H-----------HHCCCHHHHHHHHHHHH Q ss_conf 976640356667---6-----------42543269999999997 Q gi|254781155|r 1 MGFKKPYQNQIE---H-----------AQGGRKTTAWLVHIFKK 30 (35) Q Consensus 1 ~gfkkp~q~qi~---~-----------a~gg~~~t~wlvhifk~ 30 (35) +||+.|..-|-+ . .-|.|||.++++-+..+ T Consensus 21 ~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~ 64 (206) T d1veca_ 21 MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 64 (206) T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHC T ss_conf 79999999999999999869988744367400112124641320 No 9 >d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Probab=3.41 E-value=1.7e+02 Score=11.72 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=9.9 Q ss_pred CCHHHHHHHHHHC Q ss_conf 6403566676425 Q gi|254781155|r 4 KKPYQNQIEHAQG 16 (35) Q Consensus 4 kkp~q~qi~~a~g 16 (35) ++|-..|||+|+- T Consensus 11 ~qaTaEQlRlAqi 23 (91) T d1wj7a1 11 PQATAEQIRLAQM 23 (91) T ss_dssp SSSSHHHHHHHHH T ss_pred CCCCHHHHHHHHH T ss_conf 7656999999998 No 10 >d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]} Probab=3.26 E-value=1.1e+02 Score=12.63 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=6.0 Q ss_pred CCHHHHHHHH Q ss_conf 6403566676 Q gi|254781155|r 4 KKPYQNQIEH 13 (35) Q Consensus 4 kkp~q~qi~~ 13 (35) .=|.|||.+| T Consensus 13 RFPn~NQTrh 22 (79) T d1v54h_ 13 RFPNQNQTRN 22 (79) T ss_dssp TSCSSBCHHH T ss_pred CCCCCHHHHH T ss_conf 6776114579 Done!