Query         gi|254781156|ref|YP_003065569.1| hypothetical protein CLIBASIA_05315 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 154
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:21:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781156.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3du6_A Telomerase reverse tra  24.0      24  0.0007   16.2   0.5   62    2-64      2-63  (162)
  2 >2jo6_A Nitrite reductase [NAD  15.7      32 0.00096   15.4  -0.3   20   84-103    14-33  (40)
  3 >3c0d_A Putative nitrite reduc  15.5      60  0.0018   14.0   1.0   22   83-104    20-41  (48)
  4 >3gjy_A Spermidine synthase; A  14.8      45  0.0013   14.6   0.3   13   79-91     51-63  (64)
  5 >2jza_A Nitrite reductase [NAD  14.6      42  0.0012   14.8   0.1   20   84-103    14-33  (40)
  6 >1kzy_C Tumor suppressor P53-b  14.2      63  0.0019   13.8   0.9   11   89-99     38-48  (49)
  7 >1p1p_A AA-conotoxin PIVA; neu  13.2      53  0.0016   14.3   0.2   13   29-41      1-13  (26)
  8 >3dff_A Teicoplanin pseudoagly  12.8      95  0.0028   12.9   1.7   31  118-148   143-173 (273)
  9 >1s58_A B19 parvovirus capsid;  11.7      95  0.0028   12.9   1.2   53   20-79     28-103 (135)
 10 >3dfi_A Pseudoaglycone deacety  10.9 1.1E+02  0.0033   12.5   1.7   32  117-148   139-170 (270)

No 1  
>>3du6_A Telomerase reverse transcriptase; RNA-directed DNA polymerase, transferase; 2.71A {Tribolium castaneum} PDB: 3du5_A (A:204-256,A:309-417)
Probab=24.00  E-value=24  Score=16.18  Aligned_cols=62  Identities=23%  Similarity=0.404  Sum_probs=38.7

Q ss_pred             CCHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHCCC
Q ss_conf             400210013678886527800037763100444310268723640144568764310110048
Q gi|254781156|r    2 RKNLLTSTSSLMFFFLSSGYALSGSSFGCCGEFKKKASSPRIHMRPFTKSSPYNNSVSNTVNN   64 (154)
Q Consensus         2 rknlltstsslmffflssgyalsgssfgccgefkkkassprihmrpftksspynnsvsntvnn   64 (154)
                      ||....-..|-.+-.|...|..|||-+.|..||..|....-... ...-...|.+.+|...-|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Gs~LSplLAN   63 (162)
T 3du6_A            2 RKPFFKLLTSKIYKVLEEKYKTSGSLYTCWSEFTQKTQGQIYGI-KVDIRDAYGDPLSGCLCE   63 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHCCSCCEEE-EEEBSCTTTSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEE-EECHHHCCCCCCHHHHHH
T ss_conf             69999999988788764362785267786699987144742899-833444757632299999


No 2  
>>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} (A:54-93)
Probab=15.67  E-value=32  Score=15.44  Aligned_cols=20  Identities=25%  Similarity=0.302  Sum_probs=14.7

Q ss_pred             CCEECCCCCCCCCCCCCCCC
Q ss_conf             00103784200012444344
Q gi|254781156|r   84 SHVNVSSPHYKHEYSSSSAS  103 (154)
Q Consensus        84 shvnvssphykheyssssas  103 (154)
                      ...-|+||.||+.|+-.+..
T Consensus        14 g~~~VasPl~Kq~f~L~~G~   33 (40)
T 2jo6_A           14 GELWVASPLKKQRFRLSDGL   33 (40)
T ss_dssp             TEEEEEETTTTEEEETTTTE
T ss_pred             CCCEEECCCCCCEEECCEEE
T ss_conf             67528889789699710007


No 3  
>>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} (A:45-92)
Probab=15.51  E-value=60  Score=13.95  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=15.9

Q ss_pred             CCCEECCCCCCCCCCCCCCCCC
Q ss_conf             0001037842000124443444
Q gi|254781156|r   83 QSHVNVSSPHYKHEYSSSSASS  104 (154)
Q Consensus        83 qshvnvssphykheyssssass  104 (154)
                      +...-|+||.||+.|+-....-
T Consensus        20 ~g~~~VasPl~Kq~f~L~tG~C   41 (48)
T 3c0d_A           20 NGEXCVASPLYKQHFSLKSGQC   41 (48)
T ss_dssp             SSSEEEECTTTCCEEETTTCBB
T ss_pred             CCCCEEECCCCCCEEECCCCEE
T ss_conf             6886895554785996334422


No 4  
>>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} (A:1-64)
Probab=14.81  E-value=45  Score=14.64  Aligned_cols=13  Identities=31%  Similarity=0.713  Sum_probs=10.2

Q ss_pred             CCCCCCCEECCCC
Q ss_conf             6686000103784
Q gi|254781156|r   79 GSAPQSHVNVSSP   91 (154)
Q Consensus        79 gsapqshvnvssp   91 (154)
                      ..+|||||+...|
T Consensus        51 nGvPqShVdL~dP   63 (64)
T 3gjy_A           51 NGVPSSHIVLGQP   63 (64)
T ss_dssp             TTEEEEEEETTCT
T ss_pred             CCEECCCEECCCC
T ss_conf             9974020625886


No 5  
>>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} (A:51-90)
Probab=14.63  E-value=42  Score=14.81  Aligned_cols=20  Identities=20%  Similarity=0.223  Sum_probs=14.5

Q ss_pred             CCEECCCCCCCCCCCCCCCC
Q ss_conf             00103784200012444344
Q gi|254781156|r   84 SHVNVSSPHYKHEYSSSSAS  103 (154)
Q Consensus        84 shvnvssphykheyssssas  103 (154)
                      ...-|+||.||..|+-....
T Consensus        14 g~~~VasPl~Kq~f~L~tG~   33 (40)
T 2jza_A           14 DDLWVASPLKKQHFRLYDGF   33 (40)
T ss_dssp             SSEEEECSSSCCEEETTTCC
T ss_pred             CCCEEECCCCCCEEECCCCC
T ss_conf             89989899889898348761


No 6  
>>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} (C:131-151,C:232-259)
Probab=14.19  E-value=63  Score=13.85  Aligned_cols=11  Identities=55%  Similarity=1.117  Sum_probs=7.8

Q ss_pred             CCCCCCCCCCC
Q ss_conf             78420001244
Q gi|254781156|r   89 SSPHYKHEYSS   99 (154)
Q Consensus        89 ssphykheyss   99 (154)
                      +-|.|||.|.|
T Consensus        38 ~hPkYkHdyvS   48 (49)
T 1kzy_C           38 QHPKYKHDYVS   48 (49)
T ss_dssp             SSGGGSTTCCC
T ss_pred             CCCCCCCCCCC
T ss_conf             67542577667


No 7  
>>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} (A:)
Probab=13.18  E-value=53  Score=14.25  Aligned_cols=13  Identities=46%  Similarity=1.311  Sum_probs=8.3

Q ss_pred             CCHHHHHHCCCCC
Q ss_conf             1004443102687
Q gi|254781156|r   29 GCCGEFKKKASSP   41 (154)
Q Consensus        29 gccgefkkkassp   41 (154)
                      ||||.+...|-.|
T Consensus         1 gccgsypnaachp   13 (26)
T 1p1p_A            1 GCCGSYPNAACHP   13 (26)
T ss_dssp             CCSTTSCCSSCCT
T ss_pred             CCCCCCCCCCCCC
T ss_conf             9666688745355


No 8  
>>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependent, hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 3dfk_A* 3dfm_A (A:)
Probab=12.77  E-value=95  Score=12.86  Aligned_cols=31  Identities=23%  Similarity=0.071  Sum_probs=21.4

Q ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             2222203689688777897577777899999
Q gi|254781156|r  118 HISRTRIDSSPPPGHIDPHPDHIRNTLALHR  148 (154)
Q Consensus       118 hisrtridsspppghidphpdhirntlalhr  148 (154)
                      .|...+.|.---|...|+||||+.-..+..+
T Consensus       143 ~i~~~~P~~v~~~~~~~~H~DH~~~~~~v~~  173 (273)
T 3dff_A          143 IIDEFDPTLVVTCAAIGEHPDHEATRDAALF  173 (273)
T ss_dssp             HHHHHCCSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             HHHHCCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             9996187499968997777234999999999


No 9  
>>1s58_A B19 parvovirus capsid; icosahedral capsid, beta-barrel, icosahedral virus; 3.50A {Human parvovirus B19} (A:283-417)
Probab=11.73  E-value=95  Score=12.86  Aligned_cols=53  Identities=30%  Similarity=0.411  Sum_probs=33.5

Q ss_pred             CEECCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCHHH-----------H------------CCCCCCCCCHHHHHC
Q ss_conf             80003776310044431026872364014456876431011-----------0------------048887876666200
Q gi|254781156|r   20 GYALSGSSFGCCGEFKKKASSPRIHMRPFTKSSPYNNSVSN-----------T------------VNNTPRVPDVSEMNS   76 (154)
Q Consensus        20 gyalsgssfgccgefkkkassprihmrpftksspynnsvsn-----------t------------vnntprvpdvsemns   76 (154)
                      +-+|.|-|||--       ---||-|||.-.+-||..--+.           -            -...-|+|+-.||+.
T Consensus        28 ~K~~tg~s~Gs~-------~~tR~sfRP~p~~QpY~~~d~dk~V~~IdaIs~G~tt~~~a~~~e~~~~vGR~PnD~E~~K  100 (135)
T 1s58_A           28 GKALTGLSTGTS-------QNTRISLRPGPVSQPYHHWDTDKYVTGINAISHGQTTYGNAEDKEYQQGVGRFPNEKEQLK  100 (135)
T ss_dssp             ----CCCSCCCS-------SSSSCCCCCCCTTSCSCEESSSCEECCSSCCBSSCCCSSCCCSCCSSCSBSCCCSTGGGSC
T ss_pred             CCCCCCCCCCCC-------CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
T ss_conf             653013333432-------5863155378865656666543345665433344115664331110234664568321135


Q ss_pred             CCC
Q ss_conf             126
Q gi|254781156|r   77 SRG   79 (154)
Q Consensus        77 srg   79 (154)
                      --+
T Consensus       101 Qlq  103 (135)
T 1s58_A          101 QLQ  103 (135)
T ss_dssp             SSC
T ss_pred             CCC
T ss_conf             578


No 10 
>>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {} (A:)
Probab=10.88  E-value=1.1e+02  Score=12.51  Aligned_cols=32  Identities=22%  Similarity=0.073  Sum_probs=22.2

Q ss_pred             HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             32222203689688777897577777899999
Q gi|254781156|r  117 KHISRTRIDSSPPPGHIDPHPDHIRNTLALHR  148 (154)
Q Consensus       117 khisrtridsspppghidphpdhirntlalhr  148 (154)
                      +.|.+-+.|.---|...|.||||+.-..+..+
T Consensus       139 ~~i~~~~Pd~V~t~~~~~~H~DH~~~~~~~~~  170 (270)
T 3dfi_A          139 SMIAECDPTLVLTCVAIGKHPDHKATRDATLL  170 (270)
T ss_dssp             HHHHHHCCSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             99985487646468876561777999999999


Done!