Query gi|254781156|ref|YP_003065569.1| hypothetical protein CLIBASIA_05315 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 154 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 22:21:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781156.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3du6_A Telomerase reverse tra 24.0 24 0.0007 16.2 0.5 62 2-64 2-63 (162) 2 >2jo6_A Nitrite reductase [NAD 15.7 32 0.00096 15.4 -0.3 20 84-103 14-33 (40) 3 >3c0d_A Putative nitrite reduc 15.5 60 0.0018 14.0 1.0 22 83-104 20-41 (48) 4 >3gjy_A Spermidine synthase; A 14.8 45 0.0013 14.6 0.3 13 79-91 51-63 (64) 5 >2jza_A Nitrite reductase [NAD 14.6 42 0.0012 14.8 0.1 20 84-103 14-33 (40) 6 >1kzy_C Tumor suppressor P53-b 14.2 63 0.0019 13.8 0.9 11 89-99 38-48 (49) 7 >1p1p_A AA-conotoxin PIVA; neu 13.2 53 0.0016 14.3 0.2 13 29-41 1-13 (26) 8 >3dff_A Teicoplanin pseudoagly 12.8 95 0.0028 12.9 1.7 31 118-148 143-173 (273) 9 >1s58_A B19 parvovirus capsid; 11.7 95 0.0028 12.9 1.2 53 20-79 28-103 (135) 10 >3dfi_A Pseudoaglycone deacety 10.9 1.1E+02 0.0033 12.5 1.7 32 117-148 139-170 (270) No 1 >>3du6_A Telomerase reverse transcriptase; RNA-directed DNA polymerase, transferase; 2.71A {Tribolium castaneum} PDB: 3du5_A (A:204-256,A:309-417) Probab=24.00 E-value=24 Score=16.18 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=38.7 Q ss_pred CCHHHHHHHHHHHHHHHCCEECCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHCCC Q ss_conf 400210013678886527800037763100444310268723640144568764310110048 Q gi|254781156|r 2 RKNLLTSTSSLMFFFLSSGYALSGSSFGCCGEFKKKASSPRIHMRPFTKSSPYNNSVSNTVNN 64 (154) Q Consensus 2 rknlltstsslmffflssgyalsgssfgccgefkkkassprihmrpftksspynnsvsntvnn 64 (154) ||....-..|-.+-.|...|..|||-+.|..||..|....-... ...-...|.+.+|...-| T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Gs~LSplLAN 63 (162) T 3du6_A 2 RKPFFKLLTSKIYKVLEEKYKTSGSLYTCWSEFTQKTQGQIYGI-KVDIRDAYGDPLSGCLCE 63 (162) T ss_dssp CHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHCCSCCEEE-EEEBSCTTTSTTHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEE-EECHHHCCCCCCHHHHHH T ss_conf 69999999988788764362785267786699987144742899-833444757632299999 No 2 >>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} (A:54-93) Probab=15.67 E-value=32 Score=15.44 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=14.7 Q ss_pred CCEECCCCCCCCCCCCCCCC Q ss_conf 00103784200012444344 Q gi|254781156|r 84 SHVNVSSPHYKHEYSSSSAS 103 (154) Q Consensus 84 shvnvssphykheyssssas 103 (154) ...-|+||.||+.|+-.+.. T Consensus 14 g~~~VasPl~Kq~f~L~~G~ 33 (40) T 2jo6_A 14 GELWVASPLKKQRFRLSDGL 33 (40) T ss_dssp TEEEEEETTTTEEEETTTTE T ss_pred CCCEEECCCCCCEEECCEEE T ss_conf 67528889789699710007 No 3 >>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} (A:45-92) Probab=15.51 E-value=60 Score=13.95 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=15.9 Q ss_pred CCCEECCCCCCCCCCCCCCCCC Q ss_conf 0001037842000124443444 Q gi|254781156|r 83 QSHVNVSSPHYKHEYSSSSASS 104 (154) Q Consensus 83 qshvnvssphykheyssssass 104 (154) +...-|+||.||+.|+-....- T Consensus 20 ~g~~~VasPl~Kq~f~L~tG~C 41 (48) T 3c0d_A 20 NGEXCVASPLYKQHFSLKSGQC 41 (48) T ss_dssp SSSEEEECTTTCCEEETTTCBB T ss_pred CCCCEEECCCCCCEEECCCCEE T ss_conf 6886895554785996334422 No 4 >>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} (A:1-64) Probab=14.81 E-value=45 Score=14.64 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=10.2 Q ss_pred CCCCCCCEECCCC Q ss_conf 6686000103784 Q gi|254781156|r 79 GSAPQSHVNVSSP 91 (154) Q Consensus 79 gsapqshvnvssp 91 (154) ..+|||||+...| T Consensus 51 nGvPqShVdL~dP 63 (64) T 3gjy_A 51 NGVPSSHIVLGQP 63 (64) T ss_dssp TTEEEEEEETTCT T ss_pred CCEECCCEECCCC T ss_conf 9974020625886 No 5 >>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} (A:51-90) Probab=14.63 E-value=42 Score=14.81 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=14.5 Q ss_pred CCEECCCCCCCCCCCCCCCC Q ss_conf 00103784200012444344 Q gi|254781156|r 84 SHVNVSSPHYKHEYSSSSAS 103 (154) Q Consensus 84 shvnvssphykheyssssas 103 (154) ...-|+||.||..|+-.... T Consensus 14 g~~~VasPl~Kq~f~L~tG~ 33 (40) T 2jza_A 14 DDLWVASPLKKQHFRLYDGF 33 (40) T ss_dssp SSEEEECSSSCCEEETTTCC T ss_pred CCCEEECCCCCCEEECCCCC T ss_conf 89989899889898348761 No 6 >>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} (C:131-151,C:232-259) Probab=14.19 E-value=63 Score=13.85 Aligned_cols=11 Identities=55% Similarity=1.117 Sum_probs=7.8 Q ss_pred CCCCCCCCCCC Q ss_conf 78420001244 Q gi|254781156|r 89 SSPHYKHEYSS 99 (154) Q Consensus 89 ssphykheyss 99 (154) +-|.|||.|.| T Consensus 38 ~hPkYkHdyvS 48 (49) T 1kzy_C 38 QHPKYKHDYVS 48 (49) T ss_dssp SSGGGSTTCCC T ss_pred CCCCCCCCCCC T ss_conf 67542577667 No 7 >>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} (A:) Probab=13.18 E-value=53 Score=14.25 Aligned_cols=13 Identities=46% Similarity=1.311 Sum_probs=8.3 Q ss_pred CCHHHHHHCCCCC Q ss_conf 1004443102687 Q gi|254781156|r 29 GCCGEFKKKASSP 41 (154) Q Consensus 29 gccgefkkkassp 41 (154) ||||.+...|-.| T Consensus 1 gccgsypnaachp 13 (26) T 1p1p_A 1 GCCGSYPNAACHP 13 (26) T ss_dssp CCSTTSCCSSCCT T ss_pred CCCCCCCCCCCCC T ss_conf 9666688745355 No 8 >>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependent, hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 3dfk_A* 3dfm_A (A:) Probab=12.77 E-value=95 Score=12.86 Aligned_cols=31 Identities=23% Similarity=0.071 Sum_probs=21.4 Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 2222203689688777897577777899999 Q gi|254781156|r 118 HISRTRIDSSPPPGHIDPHPDHIRNTLALHR 148 (154) Q Consensus 118 hisrtridsspppghidphpdhirntlalhr 148 (154) .|...+.|.---|...|+||||+.-..+..+ T Consensus 143 ~i~~~~P~~v~~~~~~~~H~DH~~~~~~v~~ 173 (273) T 3dff_A 143 IIDEFDPTLVVTCAAIGEHPDHEATRDAALF 173 (273) T ss_dssp HHHHHCCSEEEEECCTTCCHHHHHHHHHHHH T ss_pred HHHHCCCEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 9996187499968997777234999999999 No 9 >>1s58_A B19 parvovirus capsid; icosahedral capsid, beta-barrel, icosahedral virus; 3.50A {Human parvovirus B19} (A:283-417) Probab=11.73 E-value=95 Score=12.86 Aligned_cols=53 Identities=30% Similarity=0.411 Sum_probs=33.5 Q ss_pred CEECCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCCHHH-----------H------------CCCCCCCCCHHHHHC Q ss_conf 80003776310044431026872364014456876431011-----------0------------048887876666200 Q gi|254781156|r 20 GYALSGSSFGCCGEFKKKASSPRIHMRPFTKSSPYNNSVSN-----------T------------VNNTPRVPDVSEMNS 76 (154) Q Consensus 20 gyalsgssfgccgefkkkassprihmrpftksspynnsvsn-----------t------------vnntprvpdvsemns 76 (154) +-+|.|-|||-- ---||-|||.-.+-||..--+. - -...-|+|+-.||+. T Consensus 28 ~K~~tg~s~Gs~-------~~tR~sfRP~p~~QpY~~~d~dk~V~~IdaIs~G~tt~~~a~~~e~~~~vGR~PnD~E~~K 100 (135) T 1s58_A 28 GKALTGLSTGTS-------QNTRISLRPGPVSQPYHHWDTDKYVTGINAISHGQTTYGNAEDKEYQQGVGRFPNEKEQLK 100 (135) T ss_dssp ----CCCSCCCS-------SSSSCCCCCCCTTSCSCEESSSCEECCSSCCBSSCCCSSCCCSCCSSCSBSCCCSTGGGSC T ss_pred CCCCCCCCCCCC-------CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC T ss_conf 653013333432-------5863155378865656666543345665433344115664331110234664568321135 Q ss_pred CCC Q ss_conf 126 Q gi|254781156|r 77 SRG 79 (154) Q Consensus 77 srg 79 (154) --+ T Consensus 101 Qlq 103 (135) T 1s58_A 101 QLQ 103 (135) T ss_dssp SSC T ss_pred CCC T ss_conf 578 No 10 >>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {} (A:) Probab=10.88 E-value=1.1e+02 Score=12.51 Aligned_cols=32 Identities=22% Similarity=0.073 Sum_probs=22.2 Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 32222203689688777897577777899999 Q gi|254781156|r 117 KHISRTRIDSSPPPGHIDPHPDHIRNTLALHR 148 (154) Q Consensus 117 khisrtridsspppghidphpdhirntlalhr 148 (154) +.|.+-+.|.---|...|.||||+.-..+..+ T Consensus 139 ~~i~~~~Pd~V~t~~~~~~H~DH~~~~~~~~~ 170 (270) T 3dfi_A 139 SMIAECDPTLVLTCVAIGKHPDHKATRDATLL 170 (270) T ss_dssp HHHHHHCCSEEEEECCTTCCHHHHHHHHHHHH T ss_pred HHHHHCCCCEEECCCCCCCCHHHHHHHHHHHH T ss_conf 99985487646468876561777999999999 Done!