Query gi|254781156|ref|YP_003065569.1| hypothetical protein CLIBASIA_05315 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 154
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:39:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781156.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p1p_A AA-conotoxin PIVA; neur 13.0 38 0.0016 14.2 0.2 13 29-41 1-13 (26)
2 2bsc_A F17A-G adhesin; bacteri 9.8 65 0.0027 12.9 0.5 13 17-29 91-103 (177)
3 1pqr_A Alpha-A-conotoxin EIVA; 8.8 59 0.0025 13.2 -0.0 13 29-41 1-13 (31)
4 1ytv_M V1AR, vasopressin V1A r 7.9 1E+02 0.0042 11.9 0.9 17 21-37 22-38 (84)
5 3dfi_A Pseudoaglycone deacetyl 6.9 1.1E+02 0.0048 11.6 1.8 31 117-147 139-169 (270)
6 3dff_A Teicoplanin pseudoaglyc 6.2 1.3E+02 0.0053 11.3 1.8 28 119-146 144-171 (273)
7 2i9w_A Hypothetical protein; s 6.2 75 0.0031 12.6 -0.5 24 24-47 22-59 (184)
8 2e62_A Protein AT5G25060; CWF2 5.3 1.4E+02 0.006 11.0 2.3 18 136-153 39-56 (61)
9 3a7o_A Autophagy protein 16; c 5.0 1.5E+02 0.0063 10.9 2.5 22 131-152 7-28 (75)
10 1sse_B AP-1 like transcription 4.9 1.4E+02 0.0059 11.1 0.3 10 29-38 54-63 (86)
No 1
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=12.99 E-value=38 Score=14.20 Aligned_cols=13 Identities=46% Similarity=1.311 Sum_probs=8.6
Q ss_pred CCHHHHHHCCCCC
Q ss_conf 1004443102687
Q gi|254781156|r 29 GCCGEFKKKASSP 41 (154)
Q Consensus 29 gccgefkkkassp 41 (154)
||||.+...|-.|
T Consensus 1 gccgsypnaachp 13 (26)
T 1p1p_A 1 GCCGSYPNAACHP 13 (26)
T ss_dssp CCSTTSCCSSCCT
T ss_pred CCCCCCCCCCCCC
T ss_conf 9666688745355
No 2
>2bsc_A F17A-G adhesin; bacterial adhesion, lectin, protein-sugar complex, fimbriae; HET: NAG; 1.4A {Escherichia coli} SCOP: b.2.3.5 PDB: 1o9v_A* 1zpl_A* 1o9w_A* 3f64_A* 3f6j_A* 1o9z_A 2bsb_A* 1zk5_A* 1oio_A* 3ffo_A* 2bs8_A* 2bs7_1*
Probab=9.80 E-value=65 Score=12.93 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=9.2
Q ss_pred HHCCEECCCCCCC
Q ss_conf 5278000377631
Q gi|254781156|r 17 LSSGYALSGSSFG 29 (154)
Q Consensus 17 lssgyalsgssfg 29 (154)
.|.|-|+||.|+.
T Consensus 91 ysrgtamsgnswe 103 (177)
T 2bsc_A 91 YSRGTAMSGNSWE 103 (177)
T ss_dssp GGGCEECCSSSCE
T ss_pred CCCCCCCCCCCHH
T ss_conf 1343112576365
No 3
>1pqr_A Alpha-A-conotoxin EIVA; alpha-helix, two disulfide bonds, C-TERM amidation; HET: HYP; NMR {Synthetic} SCOP: j.30.1.3
Probab=8.81 E-value=59 Score=13.18 Aligned_cols=13 Identities=46% Similarity=1.293 Sum_probs=7.8
Q ss_pred CCHHHHHHCCCCC
Q ss_conf 1004443102687
Q gi|254781156|r 29 GCCGEFKKKASSP 41 (154)
Q Consensus 29 gccgefkkkassp 41 (154)
||||.+...|-.|
T Consensus 1 gccgpypnaachp 13 (31)
T 1pqr_A 1 GCCGPYPNAACHP 13 (31)
T ss_dssp CCCCSSSSSSCCT
T ss_pred CCCCCCCCCCCCC
T ss_conf 9767788754255
No 4
>1ytv_M V1AR, vasopressin V1A receptor; GPCR, fusion protein, maltose- binding protein, sugar binding protein, hormone receptor; HET: MAL; 1.80A {Homo sapiens}
Probab=7.92 E-value=1e+02 Score=11.88 Aligned_cols=17 Identities=41% Similarity=0.851 Sum_probs=11.7
Q ss_pred EECCCCCCCCHHHHHHC
Q ss_conf 00037763100444310
Q gi|254781156|r 21 YALSGSSFGCCGEFKKK 37 (154)
Q Consensus 21 yalsgssfgccgefkkk 37 (154)
|--...+|-||-.+|.+
T Consensus 22 ~~~~~gsFpCC~k~k~~ 38 (84)
T 1ytv_M 22 YFQGQGSFPCCQNMKEK 38 (84)
T ss_pred EECCCCCCHHHHHHHHH
T ss_conf 66157664478888865
No 5
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=6.94 E-value=1.1e+02 Score=11.57 Aligned_cols=31 Identities=23% Similarity=0.099 Sum_probs=19.1
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3222220368968877789757777789999
Q gi|254781156|r 117 KHISRTRIDSSPPPGHIDPHPDHIRNTLALH 147 (154)
Q Consensus 117 khisrtridsspppghidphpdhirntlalh 147 (154)
+.|.+-+.|.---|.-.|.||||+.-..+..
T Consensus 139 ~~i~~~~Pd~v~tp~~~d~H~DH~~~~~a~~ 169 (270)
T 3dfi_A 139 SMIAECDPTLVLTCVAIGKHPDHKATRDATL 169 (270)
T ss_dssp HHHHHHCCSEEEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHCCCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 9998549978978898888767999999999
No 6
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependent, hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 3dfk_A* 3dfm_A
Probab=6.21 E-value=1.3e+02 Score=11.35 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=17.4
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2222036896887778975777778999
Q gi|254781156|r 119 ISRTRIDSSPPPGHIDPHPDHIRNTLAL 146 (154)
Q Consensus 119 isrtridsspppghidphpdhirntlal 146 (154)
|.+.+.|.---|.-.|.||||+.--.+.
T Consensus 144 i~~~~Pd~v~~p~~~d~H~DH~~~~~a~ 171 (273)
T 3dff_A 144 IDEFDPTLVVTCAAIGEHPDHEATRDAA 171 (273)
T ss_dssp HHHHCCSEEEEECCTTCCHHHHHHHHHH
T ss_pred HHHCCCCEEECCCCCCCCCCCHHHHHHH
T ss_conf 9855997798889888888519999999
No 7
>2i9w_A Hypothetical protein; structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Psychrobacter arcticus} SCOP: d.17.4.30 g.74.1.1 g.74.1.1
Probab=6.17 E-value=75 Score=12.59 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=16.4
Q ss_pred CCCCCC-CHHHHHH-------------CCCCCCEEEEC
Q ss_conf 377631-0044431-------------02687236401
Q gi|254781156|r 24 SGSSFG-CCGEFKK-------------KASSPRIHMRP 47 (154)
Q Consensus 24 sgssfg-ccgefkk-------------kassprihmrp 47 (154)
||..|. |||-|-. .|.+|.--||-
T Consensus 22 s~~~Y~~CC~p~h~G~~~~~~~~~~~~~a~TaE~LMRS 59 (184)
T 2i9w_A 22 TPLLYQDCCQPYHDGLYNQEVEDSDAIRADTAEHLMRT 59 (184)
T ss_dssp CCCBGGGTTHHHHHHHHHC------CCCCSSHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 75739997189876874434343356689999999987
No 8
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=5.32 E-value=1.4e+02 Score=11.04 Aligned_cols=18 Identities=33% Similarity=0.645 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHHHHC
Q ss_conf 757777789999998731
Q gi|254781156|r 136 HPDHIRNTLALHRKMLEQ 153 (154)
Q Consensus 136 hpdhirntlalhrkmleq 153 (154)
..+.|....|+|||-||.
T Consensus 39 n~eEierkVa~hRkrLes 56 (61)
T 2e62_A 39 NPEEIERKVEINRKRLEV 56 (61)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 699999999999999977
No 9
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=5.00 E-value=1.5e+02 Score=10.92 Aligned_cols=22 Identities=45% Similarity=0.616 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7778975777778999999873
Q gi|254781156|r 131 GHIDPHPDHIRNTLALHRKMLE 152 (154)
Q Consensus 131 ghidphpdhirntlalhrkmle 152 (154)
|.|-.|-|...|+||.-|+-|.
T Consensus 7 ~~~~~~~d~l~~~la~Lr~eL~ 28 (75)
T 3a7o_A 7 GNIVSHDDALLNTLAILQKELK 28 (75)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7412464689999999999998
No 10
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=4.91 E-value=1.4e+02 Score=11.07 Aligned_cols=10 Identities=50% Similarity=0.879 Sum_probs=0.0
Q ss_pred CCHHHHHHCC
Q ss_conf 1004443102
Q gi|254781156|r 29 GCCGEFKKKA 38 (154)
Q Consensus 29 gccgefkkka 38 (154)
|-|-|+++||
T Consensus 54 ~LCsEL~~KA 63 (86)
T 1sse_B 54 GLCSELMAKA 63 (86)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHHHC
T ss_conf 8999999856
Done!