Query gi|254781156|ref|YP_003065569.1| hypothetical protein CLIBASIA_05315 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 154 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:34:02 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781156.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2bsca1 b.2.3.5 (A:1-176) Fimb 9.9 37 0.0027 13.0 0.5 13 17-29 91-103 (176) 2 d1gr0a2 d.81.1.3 (A:201-311) M 8.9 21 0.0015 14.4 -1.1 41 11-51 10-53 (111) 3 d1wjva1 g.37.1.2 (A:1-35) Cell 5.0 20 0.0015 14.4 -2.7 22 8-39 3-24 (35) 4 d3bofa2 c.1.26.1 (A:1-300) Cob 4.2 94 0.0068 10.7 0.1 14 129-142 269-282 (300) 5 d1lt7a_ c.1.26.1 (A:) Betaine- 4.2 94 0.0068 10.7 0.1 10 132-141 289-298 (361) 6 d1p3da1 c.5.1.1 (A:11-106) UDP 4.1 1E+02 0.0074 10.5 0.6 27 8-34 20-46 (96) 7 d1hynp_ d.112.1.2 (P:) Erythro 3.6 1.1E+02 0.0082 10.3 1.6 23 128-151 266-288 (293) 8 d3d1ma1 d.65.1.2 (A:41-188) So 3.5 1.2E+02 0.0084 10.2 0.7 16 107-122 95-110 (148) 9 d1ha9a_ g.3.2.1 (A:) Trypsin i 3.2 1.2E+02 0.009 10.1 0.1 14 24-37 1-14 (34) 10 d1tjla2 g.39.1.13 (A:111-151) 3.1 60 0.0044 11.8 -1.6 23 28-50 1-23 (41) No 1 >d2bsca1 b.2.3.5 (A:1-176) Fimbrial adhesin F17-AG lectin domain {Escherichia coli [TaxId: 562]} Probab=9.90 E-value=37 Score=12.97 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=9.2 Q ss_pred HHCCEECCCCCCC Q ss_conf 5278000377631 Q gi|254781156|r 17 LSSGYALSGSSFG 29 (154) Q Consensus 17 lssgyalsgssfg 29 (154) .|.|-|+||.|+. T Consensus 91 ysrgtamsgnswe 103 (176) T d2bsca1 91 YSRGTAMSGNSWE 103 (176) T ss_dssp GGGCEECCSSSCE T ss_pred CCCCCCCCCCCHH T ss_conf 1343112576365 No 2 >d1gr0a2 d.81.1.3 (A:201-311) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=8.91 E-value=21 Score=14.37 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=16.2 Q ss_pred HHHHHHHHCCEECCCC---CCCCHHHHHHCCCCCCEEEECCCCC Q ss_conf 6788865278000377---6310044431026872364014456 Q gi|254781156|r 11 SLMFFFLSSGYALSGS---SFGCCGEFKKKASSPRIHMRPFTKS 51 (154) Q Consensus 11 slmffflssgyalsgs---sfgccgefkkkassprihmrpftks 51 (154) .|.=||...|..+.+. .+|--.+|.--....|....-.+|+ T Consensus 10 ~La~~~~~Rglkv~~~~q~Ni~GN~D~lnl~~~~r~~sK~~SK~ 53 (111) T d1gr0a2 10 VLAKLFEDRGVQLDRTMQLNVGGNMDFLNMLERERLESKKISKT 53 (111) T ss_dssp HHHHHHHHTTCEEEEEEEEEEECSHHHHHHHC------------ T ss_pred HHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCHHHHHHHHHHCC T ss_conf 99999998699526899875247714556579868765454111 No 3 >d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]} Probab=5.00 E-value=20 Score=14.38 Aligned_cols=22 Identities=50% Similarity=0.640 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHCCEECCCCCCCCHHHHHHCCC Q ss_conf 01367888652780003776310044431026 Q gi|254781156|r 8 STSSLMFFFLSSGYALSGSSFGCCGEFKKKAS 39 (154) Q Consensus 8 stsslmffflssgyalsgssfgccgefkkkas 39 (154) |.||.|.||-- .-|||--||+. T Consensus 3 ~~~s~MVfFtC----------n~CGEs~KK~q 24 (35) T d1wjva1 3 SGSSGMVFFTC----------NACGESVKKIQ 24 (35) T ss_dssp SSSCCCCEEEE----------SSSCCEEETTH T ss_pred CCCCEEEEEEC----------CHHHHHHHHHH T ss_conf 88546999980----------51477772888 No 4 >d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=4.18 E-value=94 Score=10.73 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=8.8 Q ss_pred CCCCCCCCHHHHHH Q ss_conf 88777897577777 Q gi|254781156|r 129 PPGHIDPHPDHIRN 142 (154) Q Consensus 129 ppghidphpdhirn 142 (154) --|--.-.|+||+- T Consensus 269 IGGCCgt~P~hI~~ 282 (300) T d3bofa2 269 FGGCCGTTPEHVKL 282 (300) T ss_dssp ECCCTTCCHHHHHH T ss_pred EEECCCCCHHHHHH T ss_conf 99867799999999 No 5 >d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Probab=4.17 E-value=94 Score=10.72 Aligned_cols=10 Identities=40% Similarity=0.461 Sum_probs=3.9 Q ss_pred CCCCCHHHHH Q ss_conf 7789757777 Q gi|254781156|r 132 HIDPHPDHIR 141 (154) Q Consensus 132 hidphpdhir 141 (154) --.--|+||+ T Consensus 289 CCGttP~HI~ 298 (361) T d1lt7a_ 289 CCGFEPYHIR 298 (361) T ss_dssp CTTCCHHHHH T ss_pred CCCCCHHHHH T ss_conf 9879899999 No 6 >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Probab=4.07 E-value=1e+02 Score=10.52 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHCCEECCCCCCCCHHHH Q ss_conf 013678886527800037763100444 Q gi|254781156|r 8 STSSLMFFFLSSGYALSGSSFGCCGEF 34 (154) Q Consensus 8 stsslmffflssgyalsgssfgccgef 34 (154) -.|.|-.+++..||..+||.....-.. T Consensus 20 GMs~LA~~L~~~G~~VsGSD~~~~~~~ 46 (96) T d1p3da1 20 GMSGIAEILLNEGYQISGSDIADGVVT 46 (96) T ss_dssp THHHHHHHHHHHTCEEEEEESCCSHHH T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHH T ss_conf 999999999848977999708878012 No 7 >d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.62 E-value=1.1e+02 Score=10.30 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=11.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 688777897577777899999987 Q gi|254781156|r 128 PPPGHIDPHPDHIRNTLALHRKML 151 (154) Q Consensus 128 pppghidphpdhirntlalhrkml 151 (154) -|||.+||. +.|+.-+...++|+ T Consensus 266 LPPg~~d~~-~~l~~~~~~q~~~~ 288 (293) T d1hynp_ 266 LPPTDAPSE-QALLSLVPVQRELL 288 (293) T ss_dssp ECCCCSCHH-HHHHSHHHHHHHHH T ss_pred CCCCCCCHH-HHCCCCCCCCHHHH T ss_conf 699887956-74546541138988 No 8 >d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]} Probab=3.50 E-value=1.2e+02 Score=10.23 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=6.8 Q ss_pred CCCCCCHHHHHHHHHH Q ss_conf 5798860233322222 Q gi|254781156|r 107 HASPPPHFEQKHISRT 122 (154) Q Consensus 107 hasppphfeqkhisrt 122 (154) |+.-.-|+|-.-.--| T Consensus 95 h~~~SLHyEGRAvdit 110 (148) T d3d1ma1 95 HSEESLHYEGRAVDIT 110 (148) T ss_dssp SCTTCGGGGTCEEEEE T ss_pred CCCCCCCCCCEEEEEE T ss_conf 6865434455367888 No 9 >d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]} Probab=3.19 E-value=1.2e+02 Score=10.06 Aligned_cols=14 Identities=50% Similarity=0.698 Sum_probs=0.0 Q ss_pred CCCCCCCHHHHHHC Q ss_conf 37763100444310 Q gi|254781156|r 24 SGSSFGCCGEFKKK 37 (154) Q Consensus 24 sgssfgccgefkkk 37 (154) |||+.|.|-..-|| T Consensus 1 sgs~~gvcpkilkk 14 (34) T d1ha9a_ 1 SGSDGGVCPKILKK 14 (34) T ss_dssp CCBTTBCCCCCCCB T ss_pred CCCCCCCCHHHHHH T ss_conf 98656508899998 No 10 >d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]} Probab=3.14 E-value=60 Score=11.79 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=0.0 Q ss_pred CCCHHHHHHCCCCCCEEEECCCC Q ss_conf 31004443102687236401445 Q gi|254781156|r 28 FGCCGEFKKKASSPRIHMRPFTK 50 (154) Q Consensus 28 fgccgefkkkassprihmrpftk 50 (154) ||-|-+-.+.-.-.|...+|++. T Consensus 1 YG~C~~Cg~~I~~~RL~a~P~a~ 23 (41) T d1tjla2 1 FGYCESCGVEIGIRRLEARPTAD 23 (41) T ss_dssp CSBCSSSSCBCCHHHHHHCTTCC T ss_pred CCCHHHCCCCCCHHHHHCCCCCC T ss_conf 90640483905799984699857 Done!