RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781156|ref|YP_003065569.1| hypothetical protein
CLIBASIA_05315 [Candidatus Liberibacter asiaticus str. psy62]
         (154 letters)



>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX
           research center for structural genomics, nysgxrc; 2.10A
           {Saccharomyces cerevisiae} SCOP: d.109.1.2
          Length = 141

 Score = 26.3 bits (57), Expect = 3.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 67  RVPDVSEMNSSRGSAPQSHVNVSSPHYKHEYSSSSASSSTH 107
           R  D   +   RGS P +   + SP+ K EY   S  SS H
Sbjct: 13  REIDAEYLKIVRGSDPDTTWLIISPNAKKEYEPESTGSSFH 53


>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding
           protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi}
           SCOP: d.58.7.1
          Length = 139

 Score = 25.5 bits (55), Expect = 5.4
 Identities = 9/43 (20%), Positives = 13/43 (30%)

Query: 100 SSASSSTHASPPPHFEQKHISRTRIDSSPPPGHIDPHPDHIRN 142
           S     +   P                  PP  ++P PD +RN
Sbjct: 2   SQIPLVSQYDPYGQTXXXXXXXXXXXXXIPPTQMNPEPDVLRN 44


>1gr0_A MYO-inositol-1-phosphate synthase; oxidoreductase, PSI, protein
           structure initiative, TB structural genomics consortium,
           TB, TBSGC; HET: NAD; 1.95A {Mycobacterium tuberculosis}
           SCOP: c.2.1.3 d.81.1.3
          Length = 367

 Score = 24.8 bits (54), Expect = 9.0
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 111 PPHFEQKHISRTRIDSSPPPGHIDPHPDHI 140
               E K IS+T+  +S           HI
Sbjct: 242 RERLESKKISKTQAVTSNLKREFKTKDVHI 271


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.311    0.124    0.365 

Gapped
Lambda     K      H
   0.267   0.0445    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,285,249
Number of extensions: 51984
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 14
Length of query: 154
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 70
Effective length of database: 3,656,734
Effective search space: 255971380
Effective search space used: 255971380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.5 bits)