Query gi|254781157|ref|YP_003065570.1| hypothetical protein CLIBASIA_05320 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 02:11:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781157.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b0n_B Protein (SINI protein); 32.0 12 0.00051 17.7 0.9 24 4-27 30-53 (57)
2 1rie_A Rieske iron-sulfur prot 12.5 38 0.0016 15.1 0.1 11 64-74 91-101 (129)
3 3lxy_A 4-hydroxythreonine-4-ph 12.4 33 0.0014 15.5 -0.3 10 63-72 297-306 (334)
4 2nwf_A Ubiquinol-cytochrome C 11.5 45 0.0019 14.7 0.2 11 64-74 103-113 (141)
5 2hi1_A 4-hydroxythreonine-4-ph 11.5 36 0.0015 15.3 -0.3 10 63-72 298-307 (330)
6 2bn8_A CEDA, cell division act 11.3 27 0.0011 15.9 -1.0 22 60-81 26-48 (87)
7 1j3e_A SEQA protein; protein-D 11.2 85 0.0036 13.3 1.6 16 2-17 19-34 (115)
8 1yxo_A 4-hydroxythreonine-4-ph 10.4 42 0.0017 14.9 -0.3 10 63-72 292-301 (328)
9 1lrr_A SEQA protein; protein-D 9.6 1E+02 0.0042 12.9 1.6 16 2-17 35-50 (131)
10 1pp9_E Ubiquinol-cytochrome C 8.1 74 0.0031 13.6 0.2 12 63-74 157-168 (196)
No 1
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=31.95 E-value=12 Score=17.75 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCCCEECCCCC
Q ss_conf 799999999743258722135420
Q gi|254781157|r 4 FVVRIMFLLSAISSNPILAANEHS 27 (85)
Q Consensus 4 fvvrimfllsaissnpilaanehs 27 (85)
--+|+..+++.-||+|+-++..||
T Consensus 30 EEiR~~L~~~kKSs~~~~~~RSHs 53 (57)
T 1b0n_B 30 EEIRKYLLLNKKSAHPGPAARSHT 53 (57)
T ss_dssp HHHHHHHHHC--------------
T ss_pred HHHHHHHHHCCCCCCCCCHHHHCC
T ss_conf 999999982655578873144047
No 2
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=12.46 E-value=38 Score=15.10 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=9.0
Q ss_pred CCCCCCCCCHH
Q ss_conf 97334622456
Q gi|254781157|r 64 PPDHGSKYDTR 74 (85)
Q Consensus 64 ppdhgskydtr 74 (85)
-|-|||+||..
T Consensus 91 CPCHgs~fd~~ 101 (129)
T 1rie_A 91 CPCHGSHYDAS 101 (129)
T ss_dssp ETTTTEEEETT
T ss_pred EECCCCCCCCC
T ss_conf 74768859899
No 3
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD- dependent, metal-binding, NAD, NADP, oxidoreductase, pyridoxine biosynthesis; HET: SUC; 1.70A {Yersinia pestis} PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=12.39 E-value=33 Score=15.46 Aligned_cols=10 Identities=40% Similarity=0.740 Sum_probs=4.5
Q ss_pred CCCCCCCCCC
Q ss_conf 8973346224
Q gi|254781157|r 63 TPPDHGSKYD 72 (85)
Q Consensus 63 tppdhgskyd 72 (85)
|-||||.-||
T Consensus 297 tSpdHGTA~d 306 (334)
T 3lxy_A 297 TSVDHGTALE 306 (334)
T ss_dssp EEESSCCCGG
T ss_pred ECCCCCCHHH
T ss_conf 7899871666
No 4
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur subunit; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=11.53 E-value=45 Score=14.71 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=9.0
Q ss_pred CCCCCCCCCHH
Q ss_conf 97334622456
Q gi|254781157|r 64 PPDHGSKYDTR 74 (85)
Q Consensus 64 ppdhgskydtr 74 (85)
-|-|||+||+.
T Consensus 103 CPCHgs~fD~~ 113 (141)
T 2nwf_A 103 CPCHGSHWDSA 113 (141)
T ss_dssp ETTTTEEECTT
T ss_pred CCCCCCEECCC
T ss_conf 16869989899
No 5
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural genomics, PSI-2; 2.30A {Salmonella typhimurium LT2}
Probab=11.48 E-value=36 Score=15.26 Aligned_cols=10 Identities=50% Similarity=1.046 Sum_probs=4.3
Q ss_pred CCCCCCCCCC
Q ss_conf 8973346224
Q gi|254781157|r 63 TPPDHGSKYD 72 (85)
Q Consensus 63 tppdhgskyd 72 (85)
|-||||.-||
T Consensus 298 tSpdHGTa~d 307 (330)
T 2hi1_A 298 TSADHGTAFD 307 (330)
T ss_dssp EEESCCCCTT
T ss_pred ECCCCCCHHH
T ss_conf 7899871666
No 6
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=11.26 E-value=27 Score=15.92 Aligned_cols=22 Identities=50% Similarity=0.874 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCH-HHHHHHHC
Q ss_conf 22489733462245-66897360
Q gi|254781157|r 60 TKQTPPDHGSKYDT-REVLMLFG 81 (85)
Q Consensus 60 tkqtppdhgskydt-revlmlfg 81 (85)
....||||..|.|. |.|.+|-|
T Consensus 26 vepapp~ha~kmd~frdvw~lrg 48 (87)
T 2bn8_A 26 TEPAPPEHAIKMDSFRDVWMLRG 48 (87)
T ss_dssp CCCBTTBSCBCTTTCTTEEEETT
T ss_pred CCCCCHHHHHHCCCCHHHEEECC
T ss_conf 78998077662033004102516
No 7
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=11.19 E-value=85 Score=13.26 Aligned_cols=16 Identities=44% Similarity=0.575 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 2679999999974325
Q gi|254781157|r 2 SKFVVRIMFLLSAISS 17 (85)
Q Consensus 2 skfvvrimfllsaiss 17 (85)
.|-|.|.|++||+.-.
T Consensus 19 ~kaV~RFl~iLs~Ly~ 34 (115)
T 1j3e_A 19 KRAVNRFMLLLSTLYS 34 (115)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8389999999999998
No 8
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural genomics, PSI; 2.01A {Pseudomonas aeruginosa}
Probab=10.42 E-value=42 Score=14.91 Aligned_cols=10 Identities=50% Similarity=0.807 Sum_probs=4.3
Q ss_pred CCCCCCCCCC
Q ss_conf 8973346224
Q gi|254781157|r 63 TPPDHGSKYD 72 (85)
Q Consensus 63 tppdhgskyd 72 (85)
|-||||.-||
T Consensus 292 tS~dHGTa~d 301 (328)
T 1yxo_A 292 TSVDHGTALD 301 (328)
T ss_dssp EEECSCCCGG
T ss_pred ECCCCCCHHH
T ss_conf 6799883365
No 9
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=9.59 E-value=1e+02 Score=12.89 Aligned_cols=16 Identities=44% Similarity=0.575 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 2679999999974325
Q gi|254781157|r 2 SKFVVRIMFLLSAISS 17 (85)
Q Consensus 2 skfvvrimfllsaiss 17 (85)
.|-|.|.|++||+.-.
T Consensus 35 ~~av~RFl~iLs~Ly~ 50 (131)
T 1lrr_A 35 KRAVNRFMLLLSTLYS 50 (131)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 7179999999999998
No 10
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 1bcc_E* 2bcc_E* 3bcc_E* ...
Probab=8.07 E-value=74 Score=13.60 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=9.0
Q ss_pred CCCCCCCCCCHH
Q ss_conf 897334622456
Q gi|254781157|r 63 TPPDHGSKYDTR 74 (85)
Q Consensus 63 tppdhgskydtr 74 (85)
.-|-|||+||.-
T Consensus 157 ~CpCHgs~fd~~ 168 (196)
T 1pp9_E 157 YCPCHGSHYDAS 168 (196)
T ss_dssp EETTTTEEECTT
T ss_pred EECCCCCCCCCC
T ss_conf 716989859999
Done!