Query gi|254781157|ref|YP_003065570.1| hypothetical protein CLIBASIA_05320 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 85 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:32:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781157.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1ptma_ c.77.1.3 (A:) 4-hydrox 18.5 12 0.00087 16.5 0.0 12 62-73 292-303 (329) 2 d1riea_ b.33.1.1 (A:) ISP subu 12.3 23 0.0016 15.1 0.1 12 63-74 88-99 (127) 3 d1j3ea_ d.228.1.1 (A:) Replica 10.7 53 0.0038 13.1 1.6 16 2-17 19-34 (115) 4 d3cx5e1 b.33.1.1 (E:87-215) IS 10.6 30 0.0022 14.4 0.2 11 64-74 92-102 (129) 5 d1prtb2 d.169.1.2 (B:4-89) Per 7.2 63 0.0046 12.7 0.8 18 46-63 10-27 (86) 6 d1prtc2 d.169.1.2 (C:4-89) Per 7.1 63 0.0046 12.7 0.7 18 46-63 10-27 (86) 7 d2oq0a2 b.40.16.1 (A:12-114) G 5.2 56 0.0041 13.0 -0.4 19 16-34 68-86 (103) 8 d1jm1a_ b.33.1.1 (A:) Rieske p 4.4 96 0.007 11.7 0.4 11 64-74 122-132 (202) 9 d1lrwb_ a.137.2.1 (B:) Methano 4.3 1E+02 0.0073 11.6 0.4 5 68-72 25-29 (83) 10 d1nyka_ b.33.1.1 (A:) Soluble 4.2 1.1E+02 0.0082 11.4 0.6 10 65-74 107-116 (156) No 1 >d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Probab=18.47 E-value=12 Score=16.52 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=7.5 Q ss_pred CCCCCCCCCCCH Q ss_conf 489733462245 Q gi|254781157|r 62 QTPPDHGSKYDT 73 (85) Q Consensus 62 qtppdhgskydt 73 (85) .|-||||+-||- T Consensus 292 rtSpdHGTA~dI 303 (329) T d1ptma_ 292 RTSVDHGTALEL 303 (329) T ss_dssp EEECSSCCCGGG T ss_pred EECCCCCCHHHH T ss_conf 768998722434 No 2 >d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Probab=12.32 E-value=23 Score=15.06 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=9.2 Q ss_pred CCCCCCCCCCHH Q ss_conf 897334622456 Q gi|254781157|r 63 TPPDHGSKYDTR 74 (85) Q Consensus 63 tppdhgskydtr 74 (85) .-|=|||+||.- T Consensus 88 ~CPCHgs~fd~~ 99 (127) T d1riea_ 88 YCPCHGSHYDAS 99 (127) T ss_dssp EETTTTEEEETT T ss_pred EECCCCCCCCCC T ss_conf 852758769899 No 3 >d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Probab=10.66 E-value=53 Score=13.11 Aligned_cols=16 Identities=44% Similarity=0.575 Sum_probs=12.4 Q ss_pred HHHHHHHHHHHHHHCC Q ss_conf 2679999999974325 Q gi|254781157|r 2 SKFVVRIMFLLSAISS 17 (85) Q Consensus 2 skfvvrimfllsaiss 17 (85) .+-|.|.|++||+.-. T Consensus 19 ~~av~RFl~iLs~Ly~ 34 (115) T d1j3ea_ 19 KRAVNRFMLLLSTLYS 34 (115) T ss_dssp CSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 6159999999999998 No 4 >d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=10.56 E-value=30 Score=14.43 Aligned_cols=11 Identities=55% Similarity=0.860 Sum_probs=8.6 Q ss_pred CCCCCCCCCHH Q ss_conf 97334622456 Q gi|254781157|r 64 PPDHGSKYDTR 74 (85) Q Consensus 64 ppdhgskydtr 74 (85) -|-|||+||.. T Consensus 92 CPCHgs~fd~~ 102 (129) T d3cx5e1 92 CPCHGSHYDIS 102 (129) T ss_dssp ETTTTEEECTT T ss_pred ECCCCCCCCCC T ss_conf 80768779899 No 5 >d1prtb2 d.169.1.2 (B:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]} Probab=7.23 E-value=63 Score=12.71 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=11.8 Q ss_pred HHCCCCCCCCCCCCCCCC Q ss_conf 301755556478742248 Q gi|254781157|r 46 VNKRPVANKRCPNATKQT 63 (85) Q Consensus 46 vnkrpvankrcpnatkqt 63 (85) ..+.--+--||||.|..- T Consensus 10 ~tq~g~~ygrc~n~tral 27 (86) T d1prtb2 10 ITQHGSPYGRCANKTRAL 27 (86) T ss_dssp BCSSCBSTTCCCTTEEEC T ss_pred HHHCCCCCCCCCCCCEEE T ss_conf 844278656489986021 No 6 >d1prtc2 d.169.1.2 (C:4-89) Pertussis toxin, S2/S3 subunits, N-terminal domain {Bordetella pertussis [TaxId: 520]} Probab=7.12 E-value=63 Score=12.71 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=11.7 Q ss_pred HHCCCCCCCCCCCCCCCC Q ss_conf 301755556478742248 Q gi|254781157|r 46 VNKRPVANKRCPNATKQT 63 (85) Q Consensus 46 vnkrpvankrcpnatkqt 63 (85) ..+.--+--||||.|..- T Consensus 10 ~tq~g~~ygrc~n~tral 27 (86) T d1prtc2 10 FTQQGGAYGRCPNGTRAL 27 (86) T ss_dssp BCSSCEETTBCCTTEEEC T ss_pred HHHCCCCCCCCCCCCEEE T ss_conf 844278656489986021 No 7 >d2oq0a2 b.40.16.1 (A:12-114) Gamma-interferon-inducible protein Ifi-16 {Human (Homo sapiens) [TaxId: 9606]} Probab=5.22 E-value=56 Score=12.96 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=15.0 Q ss_pred CCCCCEECCCCCHHHHHHH Q ss_conf 2587221354202457766 Q gi|254781157|r 16 SSNPILAANEHSSVSEQKR 34 (85) Q Consensus 16 ssnpilaanehssvseqkr 34 (85) ..|-+|.-|+-|||||-.- T Consensus 68 ~~~gfLEi~~~S~Vsdv~~ 86 (103) T d2oq0a2 68 EYDSLLEVNEESTVSEAGP 86 (103) T ss_dssp EETTEEEECTTCEEEECCG T ss_pred CCCCEEEECCCCEEEECCC T ss_conf 6155699822437887279 No 8 >d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Probab=4.43 E-value=96 Score=11.73 Aligned_cols=11 Identities=45% Similarity=0.694 Sum_probs=8.7 Q ss_pred CCCCCCCCCHH Q ss_conf 97334622456 Q gi|254781157|r 64 PPDHGSKYDTR 74 (85) Q Consensus 64 ppdhgskydtr 74 (85) =|-|||+||.. T Consensus 122 CpcHgS~FD~~ 132 (202) T d1jm1a_ 122 CPCHGSIYALK 132 (202) T ss_dssp CTTTCCEEEGG T ss_pred CCCCCCEECCC T ss_conf 25868877688 No 9 >d1lrwb_ a.137.2.1 (B:) Methanol dehydrogenase, light chain {Paracoccus denitrificans [TaxId: 266]} Probab=4.30 E-value=1e+02 Score=11.64 Aligned_cols=5 Identities=100% Similarity=1.630 Sum_probs=0.0 Q ss_pred CCCCC Q ss_conf 46224 Q gi|254781157|r 68 GSKYD 72 (85) Q Consensus 68 gskyd 72 (85) ||||| T Consensus 25 GsKYD 29 (83) T d1lrwb_ 25 GSKYD 29 (83) T ss_dssp TSTTC T ss_pred CCCCC T ss_conf 77679 No 10 >d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Probab=4.21 E-value=1.1e+02 Score=11.36 Aligned_cols=10 Identities=60% Similarity=1.052 Sum_probs=0.0 Q ss_pred CCCCCCCCHH Q ss_conf 7334622456 Q gi|254781157|r 65 PDHGSKYDTR 74 (85) Q Consensus 65 pdhgskydtr 74 (85) |-|||+||.+ T Consensus 107 p~Hgs~FD~~ 116 (156) T d1nyka_ 107 PCHGGVYDLR 116 (156) T ss_dssp TTTCCEEEGG T ss_pred CCCCEEEECC T ss_conf 3402479559 Done!