HHsearch alignment for GI: 254781158 and conserved domain: TIGR02933
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM; InterPro: IPR014282 Members of this entry are found in a subset of nitrogen-fixing bacteria and are annotated as nitrogen fixation protein NifM. NifM is homologous to peptidyl-prolyl cis-trans isomerases and appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase..
Probab=99.82 E-value=1.5e-18 Score=139.02 Aligned_cols=234 Identities=12% Similarity=0.236 Sum_probs=181.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 899978998601389999999999999999998498248899999996347655421023-9899999998611005677
Q gi|254781158|r 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEY 151 (631)
Q Consensus 73 ~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~F-d~~~~~~~L~~~g~t~~~~ 151 (631)
T Consensus 17 ~~L~~~~--~~~~~~~~~RQ~~~E~Av~~~~~~~~~~i~p~~le~~Wahi------asryes~~~L~~~L~~~~l~A~~~ 88 (270)
T TIGR02933 17 AELSPDQ--LQQFEQAWQRQRHIEQAVVEAADESAVDIPPSLLEEVWAHI------ASRYESAQALAAELDEQELAAAER 88 (270)
T ss_pred CCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------HHCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 7889877--89999999877899999997365224647888899999998------731567789998713304893017
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67888775444555430145422002223345543211123332100001234567898899999765666555454433
Q gi|254781158|r 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231 (631)
Q Consensus 152 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~ 231 (631)
T Consensus 89 ~a~l~h~~~l~~~L~~v~~q~---------------------------------p~p~~a~V~~wY~~Ha~~F~rPeQrl 135 (270)
T TIGR02933 89 EALLAHHVRLEAQLASVAEQA---------------------------------PQPDDAEVEAWYRRHAEQFVRPEQRL 135 (270)
T ss_pred HHHHHHHHHHHHHHHHHHCCC---------------------------------CCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999999999997058---------------------------------99960358899888674057713442
Q ss_pred HHHHHHHH-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHH---CC
Q ss_conf 22221100-0000012578899987555545554332112378875300001478887530365-1478877520---11
Q gi|254781158|r 232 ISYILFDV-HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG---KS 306 (631)
Q Consensus 232 i~yv~~~~-~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~-~F~~la~~~~---~~ 306 (631)
T Consensus 136 trHLLlTv~edfPen~--~-e--------------------------Av~~ri~al~rrL~~~~~~FA~~A~rhS~CPtA 186 (270)
T TIGR02933 136 TRHLLLTVNEDFPEND--R-E--------------------------AVRERILALLRRLRAKRAAFAELAERHSHCPTA 186 (270)
T ss_pred HHHHHEECCCCCCCCC--C-H--------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCH
T ss_conf 2233201158779888--1-7--------------------------899999999987468856789998762778620
Q ss_pred CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 236524531623226756777642023667225678617721121102333013445543223333456799
Q gi|254781158|r 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378 (631)
Q Consensus 307 ~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~~~~~~~~~~evk~~I~~~l~~~ 378 (631)
T Consensus 187 l~gG~LGWv~RG~LY-p~Ld~aLF~L-~~G~LS~~~es~lGwHlL~CE~irp~~pl~~~~aL~~~rd~L~~r 256 (270)
T TIGR02933 187 LEGGLLGWVSRGLLY-PQLDAALFQL-AEGELSAPIESELGWHLLLCEAIRPARPLEKEEALERARDRLLLR 256 (270)
T ss_pred HCCCCEEEECCCCCC-HHHHHHHHHH-HCCCCCCCHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 227820443077666-0078999998-606888601110146778753048656789878989999999999