HHsearch alignment for GI: 254781158 and conserved domain: pfam05698

>pfam05698 Trigger_C Bacterial trigger factor protein (TF) C-terminus. In the E. coli cytosol, a fraction of the newly synthesized proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent p
Probab=95.30  E-value=0.19  Score=27.24  Aligned_cols=119  Identities=18%  Similarity=0.273  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999998498248899999996347-6554---2102398999999986110056776788877544455
Q gi|254781158|r   89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP-LFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV  164 (631)
Q Consensus        89 vl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p-~Fq~---~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l  164 (631)
T Consensus        20 ~~~~~~~~~i~~~L~~~~~~evP~~~v~~e~~~~~~~~~~~~~~~g-~~---~e~~~~~~~~~~e~~~~~~~~~A~~~vk   95 (162)
T pfam05698        20 ATAEELKEAILDKLVENAEIELPESLVEEEIDRLLRQFLQQLQGQG-LD---LEEYLSLSGSSEEELREEFKEEAEKRVK   95 (162)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CC---HHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999998788999999999999999999999987669-98---8888765256478887888999999999


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             54301454220022233455432111233321000012345678988999997656665554544332222110000000
Q gi|254781158|r  165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK  244 (631)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~  244 (631)
T Consensus        96 ~~lil~~I----------------------------a~~e~i~vs~eev~~~i~~~a~~~~~------------------  129 (162)
T pfam05698        96 LGLILEEI----------------------------AKEEKIEVTDEEIKEEIEELASQYGM------------------  129 (162)
T ss_pred             HHHHHHHH----------------------------HHHCCCCCCHHHHHHHHHHHHHHCCC------------------
T ss_conf             99999999----------------------------98808998999999999999988699------------------


Q ss_pred             CCCCCHHHHHHHHHHHH
Q ss_conf             12578899987555545
Q gi|254781158|r  245 KIEISNDELQAEYEKNK  261 (631)
Q Consensus       245 ~~~vt~~ei~~~Y~~~~  261 (631)
T Consensus       130 ----~~~~i~~~~~~~~  142 (162)
T pfam05698       130 ----EPEEVKEFYKKNE  142 (162)
T ss_pred             ----CHHHHHHHHHCCH
T ss_conf             ----9999999997555