HHsearch alignment of GI: 254781158 and MMDB domain: 1t11_A_121-151_258-392

>1t11_A (A:121-151,A:258-392) Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae}
Probab=94.24  E-value=0.26  Score=25.92  Aligned_cols=136  Identities=11%  Similarity=0.152  Sum_probs=66.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             489999999999999999870889997899860138999-------9999999999999998498248899999996347
Q gi|254781158|r   51 VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI-------LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP  123 (631)
Q Consensus        51 I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qv-------l~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p  123 (631)
                      ++-.+...++...  +-+++.+..+..-+.....++.+.       ..+.....++.+.++...+.++...|...+... 
T Consensus        15 ~~~~~~~~~~~~~--~~~~~~~~~~~TleeLk~~ire~le~~~~~~~~~~~~~~ild~L~e~~~~dlPeslv~~e~~~l-   91 (166)
T 1t11_A           15 VTDADVAEMLETL--RKQQRFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVL-   91 (166)
T ss_dssp             --CTHHHHHHHHH--HHHHGGSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTBCSCCCEEECHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
T ss_conf             3207899999998--7652708754557899999999999999999998888789999997436679807899999999-


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             65542102398999999986110056-77678887754445554301454220022233455432111233321000012
Q gi|254781158|r  124 LFHGKDNKFSHDVFVSRLAREGINEK-EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV  202 (631)
Q Consensus       124 ~Fq~~~G~Fd~~~~~~~L~~~g~t~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~  202 (631)
                                ...|...+.+.|++.+ .|.+.++......-....+..          .+.                  -
T Consensus        92 ----------~~~~~~~l~~~g~~~ee~~~ee~~~~Aek~vK~~lil~----------~IA------------------~  133 (166)
T 1t11_A           92 ----------RQQAAQRFGGNVEAAAQLPRELFEEQAKRRVVVGLLLG----------EVI------------------R  133 (166)
T ss_dssp             ----------HHHHHHHSSCSHHHHTTSCGGGTHHHHHHHHHHHHHHH----------HHH------------------H
T ss_pred             ----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH------------------H
T ss_conf             ----------99999882778344446678899999999999999999----------999------------------9


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3456789889999976566655545
Q gi|254781158|r  203 PAIADPSNAVLTQWFEKYKDNYRAP  227 (631)
Q Consensus       203 ~~~~~~td~el~~yy~~nk~~f~~p  227 (631)
                      ...+.||+++|..++..--..|..+
T Consensus       134 ~e~I~vseeEi~~~i~~~A~~yg~~  158 (166)
T 1t11_A          134 THELKADEEKVKALITEMATAYEDP  158 (166)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHCC---
T ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCH
T ss_conf             9789889999999999999846998