HHsearch alignment of GI: 254781158 and MMDB domain: 2kgj_A_

>2kgj_A (A:) Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=99.65  E-value=1.4e-17  Score=132.25  Aligned_cols=98  Identities=22%  Similarity=0.380  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEE
Q ss_conf             332112378875300001478887530365147887752011----2365245316232267567776420236672256
Q gi|254781158|r  265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP  340 (631)
Q Consensus       265 ~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~  340 (631)
                      ++|++++++||+++++++|++++.+|++|.+|+++|+++|.+    .++|++||++++.+| ++|+.++| + ++|++|+
T Consensus         1 ~~p~~v~~~~I~~~~~~~A~~~~~~l~~g~~F~~lA~~~S~d~~~~~~gG~lg~~~~~~l~-~~~~~~~~-l-~~G~vs~   77 (102)
T 2kgj_A            1 TQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIP-DELKNAGL-K-EKGQLSG   77 (102)
T ss_dssp             CCCCEEEEEEEEESSHHHHHHHHHHHHHTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCC-HHHHTTCC-C-STTCEEE
T ss_pred             CCCCEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCC-HHHHHHHH-H-CCCCCCC
T ss_conf             9841687521640899999999999887999999999867896523447755235588889-79999998-2-8998343


Q ss_pred             EEEECCCCHHHHHCCCCCHHHHHHH
Q ss_conf             7861772112110233301344554
Q gi|254781158|r  341 VIHGSFGYVIAHVSNIKPSFTVSFQ  365 (631)
Q Consensus       341 pv~t~~G~~iikv~~~~~~~~~~~~  365 (631)
                      |+++++||||+||.+++++..+|||
T Consensus        78 pi~~~~G~~I~~v~~~~~~~~~~~E  102 (102)
T 2kgj_A           78 VIKSSVGFLIVRLDDIQAAHHHHHH  102 (102)
T ss_dssp             EEEETTEEEEEEEEEEECSSTTSCC
T ss_pred             CEEECCEEEEEEEEEEECCCCCCCC
T ss_conf             5797999999999368655544569