HHsearch alignment of GI: 254781158 and MMDB domain: 3gpk_A_
>3gpk_A (A:) PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444}
Probab=97.19 E-value=0.0019 Score=39.85 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf 99999999999983699978989863981440256222655423579899999861688872034516995699999705
Q gi|254781158|r 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 (631)
Q Consensus 499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~ 578 (631)
.+..|+++...+ +.|.+|+++|+.++..-...............+++++...+|++++|+++ .|...+.+|.|++|.+
T Consensus 25 ~~~~a~~i~~~l-~~g~~F~~lA~~yS~~~~~~~~g~~g~~~~~~l~~~~~~~~~~l~~Gevs-~pi~~~~G~~Iikv~~ 102 (112)
T 3gpk_A 25 VFANAEKIVEQL-KQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASXGPGQLA-GPVEIRGGFSILYLID 102 (112)
T ss_dssp HHHHHHHHHHHH-HTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHHHHCCTTCEE-EEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEEE
T ss_conf 999999999999-86999899999856353323332100003441046999999818999818-6589899999999964
Q ss_pred CCCCC
Q ss_conf 87889
Q gi|254781158|r 579 SKVGP 583 (631)
Q Consensus 579 ~~~~~ 583 (631)
..+..
T Consensus 103 ~~~~~ 107 (112)
T 3gpk_A 103 KREGH 107 (112)
T ss_dssp EECCS
T ss_pred EECCC
T ss_conf 87673