Query         gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 631
No_of_seqs    167 out of 2728
Neff          8.8 
Searched_HMMs 33803
Date          Wed Jun  1 22:38:34 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781158.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2itk_A Peptidyl-prolyl CIS-tr  99.7 4.4E-20 1.3E-24  148.6  -7.8  147  206-355    17-167 (167)
  2 >1j6y_A Peptidyl-prolyl CIS-tr  99.7 3.3E-19 9.8E-24  142.9  -3.4  129  214-355     3-139 (139)
  3 >2kgj_A Peptidyl-prolyl CIS-tr  99.7 1.4E-17 4.1E-22  132.3   0.8   98  265-365     1-102 (102)
  4 >1jns_A Peptidyl-prolyl CIS-tr  99.6 2.8E-16 8.4E-21  123.7   2.7   88  268-357     2-92  (92)
  5 >3gpk_A PPIC-type peptidyl-pro  99.6 3.2E-16 9.6E-21  123.3   2.9   96  265-362     3-109 (112)
  6 >1zk6_A Foldase protein PRSA;   99.6 2.3E-16 6.8E-21  124.3   1.2   89  266-356     1-93  (93)
  7 >1m5y_A SurviVal protein, surv  99.6 9.8E-16 2.9E-20  120.2   3.0   82  277-360    25-109 (110)
  8 >2jzv_A Foldase protein PRSA;   99.6 5.8E-16 1.7E-20  121.7   1.2   75  279-355    32-111 (111)
  9 >1eq3_A Peptidyl-prolyl CIS/tr  99.6 6.5E-16 1.9E-20  121.4   1.1   87  269-357     2-96  (96)
 10 >1yw5_A Peptidyl prolyl CIS/tr  99.5   5E-16 1.5E-20  122.1  -0.5   96  258-355    17-116 (116)
 11 >2pv1_A Chaperone SURA; surviV  99.5 6.4E-15 1.9E-19  114.8   5.1   89  267-357    12-103 (103)
 12 >1m5y_A SurviVal protein, surv  99.5 1.9E-15 5.5E-20  118.4   1.8   94  266-361     3-110 (111)
 13 >1m5y_A SurviVal protein, surv  98.8 4.4E-08 1.3E-12   70.2   8.9   67   39-110     5-71  (78)
 14 >2nsa_A Trigger factor, TF; ch  98.1  0.0003   9E-09   45.1  14.3  118   50-176    44-167 (170)
 15 >1m5y_A SurviVal protein, surv  97.2  0.0011 3.3E-08   41.4   6.8   72  110-185     1-73  (93)
 16 >2pv1_A Chaperone SURA; surviV  97.2  0.0021 6.1E-08   39.7   8.1   79  499-579    24-102 (103)
 17 >1m5y_A SurviVal protein, surv  97.2   0.002 5.9E-08   39.8   7.9   82  499-582    27-108 (110)
 18 >3gpk_A PPIC-type peptidyl-pro  97.2  0.0019 5.7E-08   39.9   7.7   83  499-583    25-107 (112)
 19 >1m5y_A SurviVal protein, surv  96.9  0.0045 1.3E-07   37.4   7.5   82  499-583    25-109 (111)
 20 >1jns_A Peptidyl-prolyl CIS-tr  96.9   0.004 1.2E-07   37.8   6.8   78  500-579    14-91  (92)
 21 >2jzv_A Foldase protein PRSA;   96.6    0.01   3E-07   35.2   7.3   77  499-578    32-111 (111)
 22 >1j6y_A Peptidyl-prolyl CIS-tr  96.4  0.0044 1.3E-07   37.5   4.4   76  501-577    63-138 (139)
 23 >1yw5_A Peptidyl prolyl CIS/tr  96.2   0.034   1E-06   31.7   8.1   78  499-577    38-115 (116)
 24 >2itk_A Peptidyl-prolyl CIS-tr  96.2   0.034   1E-06   31.7   8.0   78  500-578    90-167 (167)
 25 >1zk6_A Foldase protein PRSA;   96.0    0.02   6E-07   33.2   6.3   76  501-578    16-92  (93)
 26 >1eq3_A Peptidyl-prolyl CIS/tr  95.6   0.014 4.2E-07   34.2   4.1   75  502-579    15-95  (96)
 27 >2kgj_A Peptidyl-prolyl CIS-tr  95.1   0.035   1E-06   31.6   4.8   41  438-480    62-102 (102)
 28 >1t11_A Trigger factor, TF; he  94.2    0.26 7.8E-06   25.9   7.4  136   51-227    15-158 (166)
 29 >1t11_A Trigger factor, TF; he  93.0    0.22 6.4E-06   26.5   5.2  143  108-268    13-159 (166)
 30 >1zxj_A MPN555, hypothetical p  91.4    0.75 2.2E-05   22.9   9.8   38   85-122    81-118 (218)
 31 >2qac_A Myosin A tail domain i  66.9     6.3 0.00019   16.9   3.8   43   96-142    24-66  (67)
 32 >2mys_C Myosin; muscle protein  66.3     6.5 0.00019   16.8   3.7   47   94-143    14-60  (61)
 33 >1wdc_C Scallop myosin; calciu  56.9     9.5 0.00028   15.7   4.0   49   96-144    24-72  (77)
 34 >1top_A Troponin C; contractIl  54.9      10  0.0003   15.5   4.6   44   98-143     7-50  (52)
 35 >3d0c_A Dihydrodipicolinate sy  50.4      12 0.00036   15.1   5.7   20  124-143    22-41  (217)
 36 >1w7j_B Myosin light chain 1;   43.4      15 0.00045   14.4   2.9   44   97-143    17-60  (61)
 37 >2mys_B Myosin; muscle protein  43.0      16 0.00046   14.3   3.7   50   92-143    18-67  (74)
 38 >2bz2_A Negative elongation fa  40.1     6.7  0.0002   16.7  -0.1   51  242-292    43-95  (121)
 39 >3fia_A Intersectin-1; EH 1 do  39.4      18 0.00052   14.0   4.7   29  127-155    44-72  (121)
 40 >2ovk_C Myosin catalytic light  37.4      19 0.00056   13.8   4.0   21  127-147    23-43  (159)
 41 >2dgu_A Heterogeneous nuclear   35.5     8.4 0.00025   16.1  -0.2   46  247-292    22-67  (103)
 42 >2cqh_A IGF-II mRNA-binding pr  34.8      11 0.00032   15.4   0.3   47  247-293    19-67  (93)
 43 >1x5p_A Negative elongation fa  34.4     9.4 0.00028   15.8  -0.1   50  243-292    20-71  (97)
 44 >2cq2_A Hypothetical protein L  34.3      11 0.00032   15.3   0.3   47  247-293    38-86  (114)
 45 >1w26_A Trigger factor, TF; ch  34.2      21 0.00063   13.5   3.4   37  362-398    22-58  (80)
 46 >1exr_A Calmodulin; high resol  34.1      21 0.00063   13.4   4.2   49   93-143    39-87  (88)
 47 >2dgt_A RNA-binding protein 30  32.3     9.6 0.00029   15.7  -0.3   46  247-292    21-66  (92)
 48 >2ytc_A PRE-mRNA-splicing fact  31.3      13 0.00037   14.9   0.2   47  247-293    23-71  (85)
 49 >1xxx_A DHDPS, dihydrodipicoli  30.3      25 0.00073   13.0   5.8   18  126-143    26-43  (219)
 50 >2jnf_A Troponin C; stretch ac  30.0      25 0.00074   13.0   2.5   44   98-143    18-61  (64)
 51 >1ggw_A Protein (CDC4P); light  29.9      25 0.00074   13.0   3.0   41   99-142    29-69  (71)
 52 >1eh2_A EPS15; calcium binding  29.7      25 0.00075   13.0   4.2   47  109-155     8-54  (106)
 53 >2jvo_A Nucleolar protein 3; n  29.5      12 0.00035   15.1  -0.2   46  247-292    42-87  (108)
 54 >1xky_A Dihydrodipicolinate sy  29.0      26 0.00077   12.9   6.2   18  126-143    24-41  (219)
 55 >3fkr_A L-2-keto-3-deoxyarabon  28.5      26 0.00078   12.8   6.5   18  126-143    20-37  (309)
 56 >2dnp_A RNA-binding protein 14  27.9      13 0.00039   14.8  -0.2   46  247-292    20-65  (90)
 57 >1b7f_A Protein (SXL-lethal pr  26.4      17 0.00052   14.0   0.2   24  269-292    44-67  (84)
 58 >1wg1_A KIAA1579 protein, homo  26.1      15 0.00044   14.4  -0.2   46  247-292    16-62  (88)
 59 >3e96_A Dihydrodipicolinate sy  25.7      30 0.00088   12.5   6.0   20  124-143    22-41  (217)
 60 >2cpd_A Apobec-1 stimulating p  25.4      15 0.00044   14.5  -0.3   46  247-292    26-73  (99)
 61 >1wdc_C Scallop myosin; calciu  25.2      30 0.00089   12.5   3.4   42   99-143    33-74  (79)
 62 >2ovk_B RLC, myosin regulatory  25.2      30 0.00089   12.5   4.4   40  109-148     9-49  (153)
 63 >2wbr_A GW182, gawky, LD47780P  24.9      15 0.00046   14.3  -0.3   46  247-292    18-65  (89)
 64 >1oo0_B CG8781-PA, drosophila   24.6      24 0.00072   13.1   0.7   46  247-292    37-90  (110)
 65 >2cq1_A PTB-like protein L; RR  24.5      15 0.00045   14.4  -0.4   46  247-292    26-73  (101)
 66 >1x5s_A Cold-inducible RNA-bin  24.3      21 0.00062   13.5   0.3   23  270-292    54-76  (102)
 67 >2qfj_A FBP-interacting repres  24.0      21 0.00063   13.4   0.3   25  268-292    40-64  (80)
 68 >3h2u_B Raver-1; focal adhesio  24.0      15 0.00045   14.4  -0.5   46  247-292    12-58  (72)
 69 >1why_A Hypothetical protein r  23.8      18 0.00052   14.0  -0.2   46  247-292    28-75  (97)
 70 >2ghp_A U4/U6 snRNA-associated  23.6      26 0.00078   12.8   0.7   24  269-292    42-65  (86)
 71 >3fwb_A Cell division control   23.3      33 0.00097   12.2   4.0   44   98-143    25-68  (69)
 72 >2e5j_A Methenyltetrahydrofola  23.0      22 0.00066   13.3   0.2   46  247-292    30-78  (97)
 73 >1m45_A MLC1P, myosin light ch  22.7      34   0.001   12.1   3.7   45   97-143    19-63  (64)
 74 >2qpt_A EH domain-containing p  22.0      35   0.001   12.1   3.6   28  128-155    38-65  (118)
 75 >2cpj_A Non-POU domain-contain  21.8      19 0.00057   13.7  -0.3   46  247-292    26-73  (99)
 76 >3eb2_A Putative dihydrodipico  21.4      36  0.0011   12.0   6.1   16  127-142    17-32  (245)
 77 >2hg7_A Phage-like element PBS  21.3      36  0.0011   12.0   1.8   19  205-223    38-56  (110)
 78 >1x4c_A Splicing factor, argin  21.3      22 0.00066   13.3  -0.1   46  247-292    26-72  (108)
 79 >3cpr_A Dihydrodipicolinate sy  21.1      36  0.0011   11.9   6.0   18  126-143    28-45  (221)
 80 >2dis_A Unnamed protein produc  20.9      29 0.00085   12.6   0.4   24  269-292    51-74  (109)
 81 >1fxl_A Paraneoplastic encepha  20.8      24  0.0007   13.1  -0.0   46  247-292    13-66  (83)
 82 >1nu4_A U1A RNA binding domain  20.4      37  0.0011   11.8   1.9   46  247-292    19-73  (97)
 83 >1w7j_B Myosin light chain 1;   20.4      37  0.0011   11.8   3.9   46   99-144    32-77  (90)
 84 >1wex_A Hypothetical protein (  20.3      20  0.0006   13.6  -0.5   46  247-292    26-73  (104)
 85 >2cph_A RNA binding motif prot  20.2      26 0.00078   12.8   0.1   27  270-296    58-84  (107)
 86 >2g4b_A Splicing factor U2AF 6  20.1      26 0.00078   12.8   0.1   25  268-292    44-68  (82)

No 1  
>>2itk_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; PIN1, isomerase, WW domain; HET: D11 NAL PE4; 1.45A {Homo sapiens} (A:)
Probab=99.70  E-value=4.4e-20  Score=148.61  Aligned_cols=147  Identities=12%  Similarity=0.081  Sum_probs=129.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             67898899999765666555454433222211000000012578899987555545554332112378875300001478
Q gi|254781158|r  206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE  285 (631)
Q Consensus       206 ~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~  285 (631)
                      ..++.++++.++..+...+...+.+...++..+...+.....+++++++.+|+.+...|..|+.+ ..+++..+++.|++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~   95 (167)
T 2itk_A           17 KAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEK-ITRTKEEALELING   95 (167)
T ss_dssp             EEECTTTCCEEEEETTTCCEESSCCC------------CCSCEEEEEEEECCTTSSSCCCSSCSS-CCCCHHHHHHHHHH
T ss_pred             EEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHH
T ss_conf             98828889578872677637766325665333454333355444332147632656774423333-20029999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf             887530365147887752011----2365245316232267567776420236672256786177211211023
Q gi|254781158|r  286 AFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN  355 (631)
Q Consensus       286 ~~~~l~~g~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~  355 (631)
                      ++.+|++|.+|.+++..++++    .++|++||+.++.++ |+|++++|+| ++|+||+||+|++|||||||++
T Consensus        96 ~~~~l~~g~~f~~~aa~~~s~~~sa~~gG~lg~~~~~~l~-~~~~~~~~~l-~~Geis~pi~t~~G~~iikv~d  167 (167)
T 2itk_A           96 YIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQ-KPFEDASFAL-RTGEMSGPVFTDSGIHIILRTE  167 (167)
T ss_dssp             HHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTTSSC-HHHHHHHHHS-CTTCBCCCEEETTEEEEEEECC
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCC-HHHHHHHHCC-CCCCCCCCEECCCCEEEEEEEC
T ss_conf             9998750212499999870778543322011135434346-9999999818-9998378788699179999949


No 2  
>>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} (A:)
Probab=99.69  E-value=3.3e-19  Score=142.88  Aligned_cols=129  Identities=14%  Similarity=0.243  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q ss_conf             9997656665554544332222110000000125788999875555455543321123788753000014----788875
Q gi|254781158|r  214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQS  289 (631)
Q Consensus       214 ~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A----~~~~~~  289 (631)
                      ++||+.++.++..++.+...+        .+.+.|||+||++||++|+++|..++   ++||.+++.++|    +++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~--------~~~i~vtd~ei~~~y~~~~~~~~~~~---~~~I~~~~~~~a~~~~~~~~~~   71 (139)
T 1j6y_A            3 SSHHHHHHSSGLVPRGSHMAS--------RDQVKASHILIKHQGSRRKASWKDPE---GKIILTTTREAAVEQLKSIRED   71 (139)
T ss_dssp             -----------------CCSS--------CCSCEEECCEECSCTTSSSSSCSCCC---SCCCSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCC--------CCEEEEEEEEECCCCCCCCHHCCCCC---CCCCCCCCHHHHHHHHHHHHHH
T ss_conf             654433212576777655478--------01289998998157755520002432---1111202299999999999999


Q ss_pred             HHC-CCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf             303-65147887752011---2365245316232267567776420236672256786177211211023
Q gi|254781158|r  290 LKK-GKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN  355 (631)
Q Consensus       290 l~~-g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~  355 (631)
                      +++ |.+|+++|+.+|.+   ..+|..||+..+.++ ++|++++|+| ++|++|+|++++.|||||||+.
T Consensus        72 ~~~~~~~F~~~a~~~s~~~~~~~~g~~~~~~~~~l~-~~~~~~~~~l-~~Geis~pi~~~~g~~Iikv~a  139 (139)
T 1j6y_A           72 IVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQ-KPFEEATYAL-KVGDISDIVDTDSGVHIIKRTA  139 (139)
T ss_dssp             HHSSCCCCHHHHHHSSCHHHHHTCSEEEECSSSSSC-THHHHHHHHC-CSSSCCSCEEETTEEECCCSCC
T ss_pred             HHCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCC-HHHHHHHHHC-CCCCCCCCEEECCEEEEEEEEC
T ss_conf             874842799999995841002568612046124167-8999999848-8998476579599079999939


No 3  
>>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} (A:)
Probab=99.65  E-value=1.4e-17  Score=132.25  Aligned_cols=98  Identities=22%  Similarity=0.380  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEE
Q ss_conf             332112378875300001478887530365147887752011----2365245316232267567776420236672256
Q gi|254781158|r  265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP  340 (631)
Q Consensus       265 ~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~  340 (631)
                      ++|++++++||+++++++|++++.+|++|.+|+++|+++|.+    .++|++||++++.+| ++|+.++| + ++|++|+
T Consensus         1 ~~p~~v~~~~I~~~~~~~A~~~~~~l~~g~~F~~lA~~~S~d~~~~~~gG~lg~~~~~~l~-~~~~~~~~-l-~~G~vs~   77 (102)
T 2kgj_A            1 TQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIP-DELKNAGL-K-EKGQLSG   77 (102)
T ss_dssp             CCCCEEEEEEEEESSHHHHHHHHHHHHHTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCC-HHHHTTCC-C-STTCEEE
T ss_pred             CCCCEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCC-HHHHHHHH-H-CCCCCCC
T ss_conf             9841687521640899999999999887999999999867896523447755235588889-79999998-2-8998343


Q ss_pred             EEEECCCCHHHHHCCCCCHHHHHHH
Q ss_conf             7861772112110233301344554
Q gi|254781158|r  341 VIHGSFGYVIAHVSNIKPSFTVSFQ  365 (631)
Q Consensus       341 pv~t~~G~~iikv~~~~~~~~~~~~  365 (631)
                      |+++++||||+||.+++++..+|||
T Consensus        78 pi~~~~G~~I~~v~~~~~~~~~~~E  102 (102)
T 2kgj_A           78 VIKSSVGFLIVRLDDIQAAHHHHHH  102 (102)
T ss_dssp             EEEETTEEEEEEEEEEECSSTTSCC
T ss_pred             CEEECCEEEEEEEEEEECCCCCCCC
T ss_conf             5797999999999368655544569


No 4  
>>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} (A:)
Probab=99.60  E-value=2.8e-16  Score=123.72  Aligned_cols=88  Identities=22%  Similarity=0.301  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf             112378875300001478887530365147887752011---23652453162322675677764202366722567861
Q gi|254781158|r  268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG  344 (631)
Q Consensus       268 e~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t  344 (631)
                      ++++++||++++++.|++++.+|++|.+|+++|+.+|.+   ..+|++||+..+.+| ++|.+++|+| ++|++|+||++
T Consensus         2 ~~v~~~~I~~~~~~~A~~i~~~l~~g~~F~~la~~yS~~~~~~~~G~lg~~~~~~l~-~~~~~~~~~l-~~geis~pi~~   79 (92)
T 1jns_A            2 KTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVFSC-PVLEPTGPLHT   79 (92)
T ss_dssp             CEEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSC-HHHHHHHHHS-CTTCCEEEEEE
T ss_pred             CEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCC-HHHHHHHHHC-CCCCCCCCEEE
T ss_conf             745799987689999999999988799899999984899642468803146222035-8999999848-99996776780


Q ss_pred             CCCCHHHHHCCCC
Q ss_conf             7721121102333
Q gi|254781158|r  345 SFGYVIAHVSNIK  357 (631)
Q Consensus       345 ~~G~~iikv~~~~  357 (631)
                      +.||||+||.+++
T Consensus        80 ~~g~~Iikv~~~r   92 (92)
T 1jns_A           80 QFGYHIIKVLYRN   92 (92)
T ss_dssp             TTEEEEEEEECCC
T ss_pred             CCEEEEEEEEECC
T ss_conf             9848999997369


No 5  
>>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444} (A:)
Probab=99.60  E-value=3.2e-16  Score=123.33  Aligned_cols=96  Identities=17%  Similarity=0.243  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCC
Q ss_conf             33211237887530--------0001478887530365147887752011---236524531623226756777642023
Q gi|254781158|r  265 FSPEIRTVEQLVFP--------NQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLA  333 (631)
Q Consensus       265 ~~pe~~~~~~i~~~--------~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~  333 (631)
                      ..|+++.++||+++        .++.|++++.+|++|++|+++|+++|.+   ..+|++||+..+.|+ ++|.+++|+| 
T Consensus         3 ~~p~~v~~~~I~i~~~~~~~~~~~~~a~~i~~~l~~g~~F~~lA~~yS~~~~~~~~g~~g~~~~~~l~-~~~~~~~~~l-   80 (112)
T 3gpk_A            3 LGTEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLP-TELATTAASX-   80 (112)
T ss_dssp             --CCEEEEEEEEEECCGGGHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHHHHHHC-
T ss_pred             CCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHC-
T ss_conf             88637879999981894257999999999999998699989999985635332333210000344104-6999999818-


Q ss_pred             CCCCEEEEEEECCCCHHHHHCCCCCHHHH
Q ss_conf             66722567861772112110233301344
Q gi|254781158|r  334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTV  362 (631)
Q Consensus       334 ~~G~is~pv~t~~G~~iikv~~~~~~~~~  362 (631)
                      ++|+||+||++++||||+||.+++++.++
T Consensus        81 ~~Gevs~pi~~~~G~~Iikv~~~~~~~~~  109 (112)
T 3gpk_A           81 GPGQLAGPVEIRGGFSILYLIDKREGHHH  109 (112)
T ss_dssp             CTTCEEEEEEETTEEEEEEEEEEECCSCG
T ss_pred             CCCCCCCCEEECCEEEEEEEEEEECCCCC
T ss_conf             99981865898999999999648767367


No 6  
>>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} (A:)
Probab=99.58  E-value=2.3e-16  Score=124.31  Aligned_cols=89  Identities=21%  Similarity=0.302  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEE
Q ss_conf             32112378875300001478887530365147887752011----23652453162322675677764202366722567
Q gi|254781158|r  266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV  341 (631)
Q Consensus       266 ~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~p  341 (631)
                      .|++++++||+|++++.|++++.+|++|++|+++|+.+|.+    ..+|++||+..+.+| |+|++++|++ ++|++|+|
T Consensus         1 gp~~v~~~~I~~~~~~~A~~~~~~l~~g~~F~~lA~~yS~d~~~~~~gg~~g~~~~~~l~-~~~~~~~~~l-~~G~vs~p   78 (93)
T 1zk6_A            1 GSGKIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMD-ETFSKAAFKL-KTGEVSDP   78 (93)
T ss_dssp             --CCEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSC-TTHHHHHHHS-CTTCBCCC
T ss_pred             CCCEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCC-HHHHHHHHCC-CCCCCCCC
T ss_conf             997289999998898999999999986999999997734387434586222110278344-6899998518-99983776


Q ss_pred             EEECCCCHHHHHCCC
Q ss_conf             861772112110233
Q gi|254781158|r  342 IHGSFGYVIAHVSNI  356 (631)
Q Consensus       342 v~t~~G~~iikv~~~  356 (631)
                      +++++||||++|.++
T Consensus        79 i~~~~g~~Ii~v~~r   93 (93)
T 1zk6_A           79 VKTQYGYHIIKKTEE   93 (93)
T ss_dssp             EECSSCEEEEEEEEC
T ss_pred             EEECCEEEEEEEECC
T ss_conf             896998999999478


No 7  
>>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:149-258)
Probab=99.56  E-value=9.8e-16  Score=120.21  Aligned_cols=82  Identities=21%  Similarity=0.296  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHH
Q ss_conf             300001478887530365147887752011---23652453162322675677764202366722567861772112110
Q gi|254781158|r  277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV  353 (631)
Q Consensus       277 ~~~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv  353 (631)
                      .++++.|++++.+|++|.+|++||+++|.+   ..+|++||+..+.+| ++|.+++|+| ++|+||+||+++.||||+||
T Consensus        25 ~~~~~~A~~i~~~l~~g~~F~~la~~ys~d~~~~~~g~~g~~~~~~l~-~~~~~~~~~L-~~GevS~pi~~~~g~~Iikl  102 (110)
T 1m5y_A           25 NEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP-GIFAQALSTA-KKGDIVGPIRSGVGFHILKV  102 (110)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHTGGGTC-CTTCEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHC-HHHHHHHHHH-CCCCCCCCCCCCCHHHHHHH
T ss_conf             889888888999874012689998870347265516742100044301-0567777762-35764562015535899999


Q ss_pred             CCCCCHH
Q ss_conf             2333013
Q gi|254781158|r  354 SNIKPSF  360 (631)
Q Consensus       354 ~~~~~~~  360 (631)
                      .+++++.
T Consensus       103 ~~~~~~~  109 (110)
T 1m5y_A          103 NDLRGES  109 (110)
T ss_dssp             EEECCCC
T ss_pred             HHHHHHC
T ss_conf             9876010


No 8  
>>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} (A:)
Probab=99.56  E-value=5.8e-16  Score=121.68  Aligned_cols=75  Identities=27%  Similarity=0.453  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHCC-CCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHH
Q ss_conf             000147888753036-5147887752011----23652453162322675677764202366722567861772112110
Q gi|254781158|r  279 NQKEADEAFQSLKKG-KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV  353 (631)
Q Consensus       279 ~~~~A~~~~~~l~~g-~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv  353 (631)
                      +++.|++++.+|++| .+|+++|+++|.+    .+||++||+.++.++ ++|++++|+| ++|+||+||+|++||||+||
T Consensus        32 a~~~a~~~~~~i~~g~~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~~~-~~~~~a~~~L-~~Geis~pi~t~~G~hIikv  109 (111)
T 2jzv_A           32 AKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTD-KDFEKALFKL-KDGEVSEVVKSSFGYHIIKA  109 (111)
T ss_dssp             HHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSC-HHHHHHHHTC-CTTCBCCCEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHC-CCCCCCCCEEECCEEEEEEE
T ss_conf             999999999999829523999999978694101348645776766326-9999999848-99982887885998899998


Q ss_pred             CC
Q ss_conf             23
Q gi|254781158|r  354 SN  355 (631)
Q Consensus       354 ~~  355 (631)
                      ++
T Consensus       110 ~e  111 (111)
T 2jzv_A          110 DK  111 (111)
T ss_dssp             CC
T ss_pred             EC
T ss_conf             49


No 9  
>>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo sapiens} (A:)
Probab=99.55  E-value=6.5e-16  Score=121.38  Aligned_cols=87  Identities=22%  Similarity=0.366  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC--CCCCCCCCHHHCCCHHHHHHHHCCCCCCCEE------E
Q ss_conf             1237887530000147888753036514788775201123--6524531623226756777642023667225------6
Q gi|254781158|r  269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLAKKGDFT------P  340 (631)
Q Consensus       269 ~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~~~--~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is------~  340 (631)
                      +++++||+++++++|++++.+|++|++|+++|+++|.+..  .+.+||+.++.++ ++|.+++|+| ++|++|      +
T Consensus         2 sv~v~hI~~~~~~~A~~i~~~l~~G~~F~~lA~~~S~d~~~~~gg~g~~~~~~l~-~~~~~~~~~l-~~g~vS~~~~~~~   79 (96)
T 1eq3_A            2 AVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMV-GPFQEAAFAL-PVSGMDKPVFTDP   79 (96)
T ss_dssp             CEEEEEEEECCCSTHHHHHHHHTTTTSHHHHHHHHCCCTTTCCSEEEEESSCCSS-SHHHHHHHHC-CSCCSSTTTBCSS
T ss_pred             CEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHCCCCCCEECCCCCC-HHHHHHHHHC-CCCCCCCCCCCCC
T ss_conf             4799999977899999999998879999999998575404318974406755256-7999999847-8875246666689


Q ss_pred             EEEECCCCHHHHHCCCC
Q ss_conf             78617721121102333
Q gi|254781158|r  341 VIHGSFGYVIAHVSNIK  357 (631)
Q Consensus       341 pv~t~~G~~iikv~~~~  357 (631)
                      |+++++||||++|.+++
T Consensus        80 pv~s~~G~hIikv~~~r   96 (96)
T 1eq3_A           80 PVKTKFGYHIIMVEGRK   96 (96)
T ss_dssp             CEEETTEEEEEEEEECC
T ss_pred             CEEECCEEEEEEEEEEC
T ss_conf             76708878999996689


No 10 
>>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} (A:62-177)
Probab=99.54  E-value=5e-16  Score=122.10  Aligned_cols=96  Identities=15%  Similarity=0.204  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHC---CCCCCCCCCCCHHHCCCHHHHHHHHCCC
Q ss_conf             55455543321123788753000014788875303651-4788775201---1236524531623226756777642023
Q gi|254781158|r  258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLA  333 (631)
Q Consensus       258 ~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~-F~~la~~~~~---~~~~~~lg~~~~~~~~~~~~~~a~f~l~  333 (631)
                      ..+...+..++.....++..++++.|++++++|.+|++ |+.+|+.+|.   ..++|++||+.++.|+ ++|.+++|+| 
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~g~~~f~~~a~~~sd~~s~~~gG~lg~~~~~~l~-~~~~~~~~~l-   94 (116)
T 1yw5_A           17 NQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQ-PPFEEAAFNL-   94 (116)
T ss_dssp             TTSSSCCBTTBTTCCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEEECTTSSC-HHHHHHHHTS-
T ss_pred             CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHCC-HHHHHHHHCC-
T ss_conf             77778410013554434699999999999999864734089998871755512446532223343358-9999999828-


Q ss_pred             CCCCEEEEEEECCCCHHHHHCC
Q ss_conf             6672256786177211211023
Q gi|254781158|r  334 KKGDFTPVIHGSFGYVIAHVSN  355 (631)
Q Consensus       334 ~~G~is~pv~t~~G~~iikv~~  355 (631)
                      ++|+||+||+|++|||||||+.
T Consensus        95 ~~Geis~pi~t~~GyhIikv~g  116 (116)
T 1yw5_A           95 HVGEVSNIIETNSGVHILQRTG  116 (116)
T ss_dssp             CTTCBCCCEEETTEEEEEEECC
T ss_pred             CCCCCCCCEEECCEEEEEEEEC
T ss_conf             9898577578289089999849


No 11 
>>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} (A:)
Probab=99.54  E-value=6.4e-15  Score=114.85  Aligned_cols=89  Identities=20%  Similarity=0.281  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEE
Q ss_conf             2112378875300001478887530365147887752011---2365245316232267567776420236672256786
Q gi|254781158|r  267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH  343 (631)
Q Consensus       267 pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~  343 (631)
                      ++.+...++..++++.|++++.+|++|++|+++|+++|.+   .++|++||+..+.+| ++|.+++|+| ++|++|+|++
T Consensus        12 ~~~~~~~~~~~~~~~~a~~i~~~l~~g~~F~~la~~~S~d~~~~~~g~~g~~~~~~l~-~~~~~~i~~l-~~G~vs~pi~   89 (103)
T 2pv1_A           12 LPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP-GIFAQALSTA-KKGDIVGPIR   89 (103)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHHHTTTC-CTTCEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHC-CCCCCCCCEE
T ss_conf             8989998999999999999999988699989996443136653322321213322353-2566666326-8998887489


Q ss_pred             ECCCCHHHHHCCCC
Q ss_conf             17721121102333
Q gi|254781158|r  344 GSFGYVIAHVSNIK  357 (631)
Q Consensus       344 t~~G~~iikv~~~~  357 (631)
                      +++||||+||++++
T Consensus        90 ~~~g~~Iikv~~rr  103 (103)
T 2pv1_A           90 SGVGFHILKVNDLR  103 (103)
T ss_dssp             ETTEEEEEEEEEEC
T ss_pred             ECCEEEEEEEEEEC
T ss_conf             89999999996679


No 12 
>>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:259-369)
Probab=99.53  E-value=1.9e-15  Score=118.37  Aligned_cols=94  Identities=17%  Similarity=0.289  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHHHHHCC-CCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHC
Q ss_conf             32112378875300---------00147888753036-5147887752011----2365245316232267567776420
Q gi|254781158|r  266 SPEIRTVEQLVFPN---------QKEADEAFQSLKKG-KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFS  331 (631)
Q Consensus       266 ~pe~~~~~~i~~~~---------~~~A~~~~~~l~~g-~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~  331 (631)
                      .|++++++||+++.         ++.|++++.+|++| .+|+++|+++|.+    ..+|++||+..+.+| ++|.+++|+
T Consensus         3 ~~~~~~~~~Ili~~~~~~~~~~a~~~a~~~~~~l~~g~~~F~~lA~~~S~d~~s~~~~g~lg~~~~~~l~-~~~~~~~~~   81 (111)
T 1m5y_A            3 SVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFD-PAFRDALTR   81 (111)
T ss_dssp             CCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSC-HHHHHHHHT
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHC
T ss_conf             3036788876511320023379999999999988606344999998728996520126756777745378-899999980


Q ss_pred             CCCCCCEEEEEEECCCCHHHHHCCCCCHHH
Q ss_conf             236672256786177211211023330134
Q gi|254781158|r  332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT  361 (631)
Q Consensus       332 l~~~G~is~pv~t~~G~~iikv~~~~~~~~  361 (631)
                      | ++|+||+|++++.||||+||.+++++..
T Consensus        82 l-~~Gevs~pi~~~~G~~Iikv~~~~~~~~  110 (111)
T 1m5y_A           82 L-NKGQMSAPVHSSFGWHLIELLDTRNVDK  110 (111)
T ss_dssp             C-CTTCBCCCEECSSCEEEEEEEEEEECC-
T ss_pred             C-CCCCCCCCEECCCEEEEEEEEEEECCCC
T ss_conf             8-9999087477488389999987506888


No 13 
>>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:1-70,A:401-408)
Probab=98.78  E-value=4.4e-08  Score=70.17  Aligned_cols=67  Identities=15%  Similarity=0.085  Sum_probs=56.2

Q ss_pred             CCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             884289999878489999999999999999870889997899860138999999999999999999849824
Q gi|254781158|r   39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA  110 (631)
Q Consensus        39 ~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~v  110 (631)
                      -+.+||+|||++||.+||++++......+.++.+...+..     .++.++|++||++.|+.|+|+++||..
T Consensus         5 ~d~IvAvVNge~It~sel~~~~~~~~~~~~~~~~~~~~~~-----~lr~qvLd~LI~~~Ll~Q~A~k~gI~~   71 (78)
T 1m5y_A            5 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDA-----TLRHQIMERLIMDQIILQMGQKMGVKA   71 (78)
T ss_dssp             CCCEEEEESSSEEEHHHHHHHHHHHHHHHHTTTCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             CCEEEEEECCEEECHHHHHHHHHHHHHHHHHCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             4638999999973899999999999998763356898459-----999999999999999999999849998


No 14 
>>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} (A:)
Probab=98.09  E-value=0.0003  Score=45.10  Aligned_cols=118  Identities=10%  Similarity=0.103  Sum_probs=82.9

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             84899999999999999998708------899978998601389999999999999999998498248899999996347
Q gi|254781158|r   50 KVPFSSFINSWKQELGMISQKIG------FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP  123 (631)
Q Consensus        50 ~I~~~~f~~~~~~~~~~~~~~~g------~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p  123 (631)
                      +|+.+-+...++..+..+.++++      ...+.++. ...++.++.+++....++.+.|++.||.||+++|...|..+ 
T Consensus        44 ~iP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~~~a~~~lk~~lil~~ia~~e~I~Vs~eei~~~i~~~-  121 (170)
T 2nsa_A           44 EISDRTLEILVNEAINRLKREGRYEQIVSSYESEEKF-REELKERILDDIKRDRVIEVLAQEKGISVNDEELEKEAEEL-  121 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTCHHHHHHTSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
T ss_conf             9988999999999999999987645555442468988-88899999999999999999998857889999999999999-


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf             65542102398999999986110056776788877544455543014542200
Q gi|254781158|r  124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN  176 (631)
Q Consensus       124 ~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~  176 (631)
                         .....++.+.|...+..+|.+.+.+    +..+...++.+.+...+.++.
T Consensus       122 ---a~~~~~~~~~~~~~~~~~~~~~~~l----~~~i~~~kv~~~l~~~a~v~e  167 (170)
T 2nsa_A          122 ---APFWGISPDRAKSLVKARQDLREEL----RWAILKRKVLDLLLQEVEHHH  167 (170)
T ss_dssp             ---HHHHTSCHHHHHHHHHHCHHHHHHH----HHHHHHHHHHHHHHTTCCCBC
T ss_pred             ---HHHCCCCHHHHHHHHHHCHHHHHHH----HHHHHHHHHHHHHHHHHHHHC
T ss_conf             ---9886999999999998588999999----999999999999999743112


No 15 
>>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:71-132,A:370-400)
Probab=97.24  E-value=0.0011  Score=41.43  Aligned_cols=72  Identities=25%  Similarity=0.264  Sum_probs=57.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHH
Q ss_conf             4889999999634765542102398999999986110056776788877544455543014-542200222334554
Q gi|254781158|r  110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRF  185 (631)
Q Consensus       110 vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~  185 (631)
                      |||++|...|.++    -...+.+.+.|.+.|...|++.+.|.+.+|.++..+++++.... .+.+.....+..|+.
T Consensus         1 VsD~EVD~aI~~I----AqqN~lT~eql~~~L~~qGis~e~fR~qIR~eIl~~rL~q~~V~skI~V~~~~~~~~~~~   73 (93)
T 1m5y_A            1 ISDEQLDQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITIDAAQKDRAYRM   73 (93)
T ss_dssp             CCHHHHHHHHHHH----HHHTTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC------HHHHH
T ss_pred             CCHHHHHHHHHHH----HHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             6999999999999----987052479999999974998788888889999999987430000013446579999999


No 16 
>>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} (A:)
Probab=97.23  E-value=0.0021  Score=39.67  Aligned_cols=79  Identities=15%  Similarity=0.104  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf             99999999999983699978989863981440256222655423579899999861688872034516995699999705
Q gi|254781158|r  499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN  578 (631)
Q Consensus       499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~  578 (631)
                      .+.+|+++...+ +.|.+|+++++.++..-....+-.........+++++...+|.++.|+++ .|...+.+|.|++|++
T Consensus        24 ~~~~a~~i~~~l-~~g~~F~~la~~~S~d~~~~~~g~~g~~~~~~l~~~~~~~i~~l~~G~vs-~pi~~~~g~~Iikv~~  101 (103)
T 2pv1_A           24 AESQARAIVDQA-RNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIV-GPIRSGVGFHILKVND  101 (103)
T ss_dssp             HHHHHHHHHHHH-HTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHTTTCCTTCEE-EEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEEE
T ss_conf             999999999998-86999899964431366533223212133223532566666326899888-7489899999999966


Q ss_pred             C
Q ss_conf             8
Q gi|254781158|r  579 S  579 (631)
Q Consensus       579 ~  579 (631)
                      +
T Consensus       102 r  102 (103)
T 2pv1_A          102 L  102 (103)
T ss_dssp             E
T ss_pred             E
T ss_conf             7


No 17 
>>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:149-258)
Probab=97.21  E-value=0.002  Score=39.78  Aligned_cols=82  Identities=15%  Similarity=0.095  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf             99999999999983699978989863981440256222655423579899999861688872034516995699999705
Q gi|254781158|r  499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN  578 (631)
Q Consensus       499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~  578 (631)
                      .+..|.++..++ ++|.+|+++++.++..-.....-.........+++++...+|+++.|+++ .|...+.+|.|++|.+
T Consensus        27 ~~~~A~~i~~~l-~~g~~F~~la~~ys~d~~~~~~g~~g~~~~~~l~~~~~~~~~~L~~GevS-~pi~~~~g~~Iikl~~  104 (110)
T 1m5y_A           27 AESQARAIVDQA-RNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIV-GPIRSGVGFHILKVND  104 (110)
T ss_dssp             HHHHHHHHHHHH-HTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHTGGGTCCTTCEE-EEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHCHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHH
T ss_conf             988888899987-40126899988703472655167421000443010567777762357645-6201553589999998


Q ss_pred             CCCC
Q ss_conf             8788
Q gi|254781158|r  579 SKVG  582 (631)
Q Consensus       579 ~~~~  582 (631)
                      ..++
T Consensus       105 ~~~~  108 (110)
T 1m5y_A          105 LRGE  108 (110)
T ss_dssp             ECCC
T ss_pred             HHHH
T ss_conf             7601


No 18 
>>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444} (A:)
Probab=97.19  E-value=0.0019  Score=39.85  Aligned_cols=83  Identities=12%  Similarity=0.075  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf             99999999999983699978989863981440256222655423579899999861688872034516995699999705
Q gi|254781158|r  499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN  578 (631)
Q Consensus       499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~  578 (631)
                      .+..|+++...+ +.|.+|+++|+.++..-...............+++++...+|++++|+++ .|...+.+|.|++|.+
T Consensus        25 ~~~~a~~i~~~l-~~g~~F~~lA~~yS~~~~~~~~g~~g~~~~~~l~~~~~~~~~~l~~Gevs-~pi~~~~G~~Iikv~~  102 (112)
T 3gpk_A           25 VFANAEKIVEQL-KQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASXGPGQLA-GPVEIRGGFSILYLID  102 (112)
T ss_dssp             HHHHHHHHHHHH-HTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHHHHCCTTCEE-EEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEEE
T ss_conf             999999999999-86999899999856353323332100003441046999999818999818-6589899999999964


Q ss_pred             CCCCC
Q ss_conf             87889
Q gi|254781158|r  579 SKVGP  583 (631)
Q Consensus       579 ~~~~~  583 (631)
                      ..+..
T Consensus       103 ~~~~~  107 (112)
T 3gpk_A          103 KREGH  107 (112)
T ss_dssp             EECCS
T ss_pred             EECCC
T ss_conf             87673


No 19 
>>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:259-369)
Probab=96.93  E-value=0.0045  Score=37.44  Aligned_cols=82  Identities=7%  Similarity=0.109  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEC---CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEE
Q ss_conf             999999999999836999789898639814402---56222655423579899999861688872034516995699999
Q gi|254781158|r  499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT---NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK  575 (631)
Q Consensus       499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~---~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~  575 (631)
                      ++.++.++...+.+++.+|+.+|+.++....+.   +.+.+  .....+++++...+|.+++|+++ .|...+.+|.|++
T Consensus        25 a~~~a~~~~~~l~~g~~~F~~lA~~~S~d~~s~~~~g~lg~--~~~~~l~~~~~~~~~~l~~Gevs-~pi~~~~G~~Iik  101 (111)
T 1m5y_A           25 ARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGW--ATPDIFDPAFRDALTRLNKGQMS-APVHSSFGWHLIE  101 (111)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEE--ECGGGSCHHHHHHHHTCCTTCBC-CCEECSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHCCCCCCCC-CCEECCCEEEEEE
T ss_conf             99999999998860634499999872899652012675677--77453788999999808999908-7477488389999


Q ss_pred             ECCCCCCC
Q ss_conf             70587889
Q gi|254781158|r  576 VTNSKVGP  583 (631)
Q Consensus       576 v~~~~~~~  583 (631)
                      |.+..+..
T Consensus       102 v~~~~~~~  109 (111)
T 1m5y_A          102 LLDTRNVD  109 (111)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCC
T ss_conf             98750688


No 20 
>>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} (A:)
Probab=96.87  E-value=0.004  Score=37.78  Aligned_cols=78  Identities=19%  Similarity=0.131  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECCC
Q ss_conf             99999999999836999789898639814402562226554235798999998616888720345169956999997058
Q gi|254781158|r  500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS  579 (631)
Q Consensus       500 ~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~~  579 (631)
                      ++.|+++...+ +.|.+|+++|+.++..-.....-.........+++++...+|++++|+++ .|...+.+|.|++|.++
T Consensus        14 ~~~A~~i~~~l-~~g~~F~~la~~yS~~~~~~~~G~lg~~~~~~l~~~~~~~~~~l~~geis-~pi~~~~g~~Iikv~~~   91 (92)
T 1jns_A           14 EKLALDLLEQI-KNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPT-GPLHTQFGYHIIKVLYR   91 (92)
T ss_dssp             HHHHHHHHHHH-HHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCE-EEEEETTEEEEEEEECC
T ss_pred             HHHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEEEC
T ss_conf             99999999998-87998999999848996424688031462220358999999848999967-76780984899999736


No 21 
>>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} (A:)
Probab=96.60  E-value=0.01  Score=35.17  Aligned_cols=77  Identities=17%  Similarity=0.167  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEE---CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEE
Q ss_conf             99999999999983699978989863981440---256222655423579899999861688872034516995699999
Q gi|254781158|r  499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLT---TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK  575 (631)
Q Consensus       499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~---~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~  575 (631)
                      ++..+.++...+.+++.+|.++|+.+.....+   .+.+.+.  ..+.+++++-..+|++++|+++ .|.....+|.|++
T Consensus        32 a~~~a~~~~~~i~~g~~~F~~lA~~yS~d~~s~~~gG~lg~~--~~~~~~~~~~~a~~~L~~Geis-~pi~t~~G~hIik  108 (111)
T 2jzv_A           32 AKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYV--LKGQTDKDFEKALFKLKDGEVS-EVVKSSFGYHIIK  108 (111)
T ss_dssp             HHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEE--ETTSSCHHHHHHHHTCCTTCBC-CCEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCCC-CCEEECCEEEEEE
T ss_conf             999999999999829523999999978694101348645776--7663269999999848999828-8788599889999


Q ss_pred             ECC
Q ss_conf             705
Q gi|254781158|r  576 VTN  578 (631)
Q Consensus       576 v~~  578 (631)
                      |++
T Consensus       109 v~e  111 (111)
T 2jzv_A          109 ADK  111 (111)
T ss_dssp             ECC
T ss_pred             EEC
T ss_conf             849


No 22 
>>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} (A:)
Probab=96.40  E-value=0.0044  Score=37.54  Aligned_cols=76  Identities=7%  Similarity=-0.018  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
Q ss_conf             99999999998369997898986398144025622265542357989999986168887203451699569999970
Q gi|254781158|r  501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT  577 (631)
Q Consensus       501 ~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~  577 (631)
                      ..+.++...+...|.+|+++++.+........+..........+++++...+|++++|+++ .|...+.+|.|++|+
T Consensus        63 ~~~~~~~~~~~~~~~~F~~~a~~~s~~~~~~~~g~~~~~~~~~l~~~~~~~~~~l~~Geis-~pi~~~~g~~Iikv~  138 (139)
T 1j6y_A           63 EQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDIS-DIVDTDSGVHIIKRT  138 (139)
T ss_dssp             HHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEECSSSSSCTHHHHHHHHCCSSSCC-SCEEETTEEECCCSC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEE
T ss_conf             9999999998748427999999958410025686120461241678999999848899847-657959907999993


No 23 
>>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} (A:62-177)
Probab=96.21  E-value=0.034  Score=31.72  Aligned_cols=78  Identities=8%  Similarity=-0.115  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
Q ss_conf             9999999999998369997898986398144025622265542357989999986168887203451699569999970
Q gi|254781158|r  499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT  577 (631)
Q Consensus       499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~  577 (631)
                      .+++|+++...+......++.+++...........-.......+.+++++-..+|++++|+++ .|...+.+|.|++|+
T Consensus        38 ~~~~a~~~~~~l~~g~~~f~~~a~~~sd~~s~~~gG~lg~~~~~~l~~~~~~~~~~l~~Geis-~pi~t~~GyhIikv~  115 (116)
T 1yw5_A           38 SIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVS-NIIETNSGVHILQRT  115 (116)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEEECTTSSCHHHHHHHHTSCTTCBC-CCEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCC-CCEEECCEEEEEEEE
T ss_conf             999999999998647340899988717555124465322233433589999999828989857-757828908999984


No 24 
>>2itk_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; PIN1, isomerase, WW domain; HET: D11 NAL PE4; 1.45A {Homo sapiens} (A:)
Probab=96.18  E-value=0.034  Score=31.68  Aligned_cols=78  Identities=6%  Similarity=-0.034  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf             9999999999983699978989863981440256222655423579899999861688872034516995699999705
Q gi|254781158|r  500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN  578 (631)
Q Consensus       500 ~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~  578 (631)
                      .++|++++.++...+..++.+++...................+.+++++-..+|++++|+++ .|...+.+|.|++|++
T Consensus        90 ~~~a~~~~~~l~~g~~f~~~aa~~~s~~~sa~~gG~lg~~~~~~l~~~~~~~~~~l~~Geis-~pi~t~~G~~iikv~d  167 (167)
T 2itk_A           90 LELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMS-GPVFTDSGIHIILRTE  167 (167)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTTSSCHHHHHHHHHSCTTCBC-CCEEETTEEEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCC-CCEECCCCEEEEEEEC
T ss_conf             99999999987502124999998707785433220111354343469999999818999837-8788699179999949


No 25 
>>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} (A:)
Probab=96.03  E-value=0.02  Score=33.17  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCC-CCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf             9999999999836999789898639814402562-22655423579899999861688872034516995699999705
Q gi|254781158|r  501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI-NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN  578 (631)
Q Consensus       501 ~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i-~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~  578 (631)
                      +.|+++..++ ++|.+|+++|+.++........- .........+++++...+|++++|+++ .|...+.+|.|++|.+
T Consensus        16 ~~A~~~~~~l-~~g~~F~~lA~~yS~d~~~~~~gg~~g~~~~~~l~~~~~~~~~~l~~G~vs-~pi~~~~g~~Ii~v~~   92 (93)
T 1zk6_A           16 KTAEEVEKKL-KKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVS-DPVKTQYGYHIIKKTE   92 (93)
T ss_dssp             HHHHHHHHHH-HHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHSCTTCBC-CCEECSSCEEEEEEEE
T ss_pred             HHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCC-CCEEECCEEEEEEEEC
T ss_conf             9999999999-869999999977343874345862221102783446899998518999837-7689699899999947


No 26 
>>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo sapiens} (A:)
Probab=95.63  E-value=0.014  Score=34.19  Aligned_cols=75  Identities=15%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHCCCCEEECCC-CCCCCCCCCCCCHHHHHHHHCCCCCCCEE-----EECCCCCEEEEEE
Q ss_conf             99999999983699978989863981440256-22265542357989999986168887203-----4516995699999
Q gi|254781158|r  502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-INRMDNENKFFGYDGISQVFSGPVEMVKC-----FPIENGLSYVVFK  575 (631)
Q Consensus       502 ~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~-i~r~~~~~~~~~~~~~~~iF~~~~g~~~~-----~~~~~~~~~~v~~  575 (631)
                      +|++++.++ +.|.+|+++|+.++........ ..+.  ....+++++...+|+++.|+++.     .|...+.+|.|++
T Consensus        15 ~A~~i~~~l-~~G~~F~~lA~~~S~d~~~~~gg~g~~--~~~~l~~~~~~~~~~l~~g~vS~~~~~~~pv~s~~G~hIik   91 (96)
T 1eq3_A           15 KIMEAMEKL-KSGMRFNEVAAQYSEDKARQGGDLGWM--TRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIM   91 (96)
T ss_dssp             THHHHHHHH-TTTTSHHHHHHHHCCCTTTCCSEEEEE--SSCCSSSHHHHHHHHCCSCCSSTTTBCSSCEEETTEEEEEE
T ss_pred             HHHHHHHHH-HCCCCHHHHHHHHCCCHHHCCCCCCEE--CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCEEEEEE
T ss_conf             999999998-879999999998575404318974406--75525679999998478875246666689767088789999


Q ss_pred             ECCC
Q ss_conf             7058
Q gi|254781158|r  576 VTNS  579 (631)
Q Consensus       576 v~~~  579 (631)
                      |.++
T Consensus        92 v~~~   95 (96)
T 1eq3_A           92 VEGR   95 (96)
T ss_dssp             EEEC
T ss_pred             EEEE
T ss_conf             9668


No 27 
>>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} (A:)
Probab=95.13  E-value=0.035  Score=31.60  Aligned_cols=41  Identities=12%  Similarity=0.108  Sum_probs=20.8

Q ss_pred             HHHHHHHHCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCHH
Q ss_conf             8888753112346776511136974999998023223346678
Q gi|254781158|r  438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE  480 (631)
Q Consensus       438 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~  480 (631)
                      ..+..++....+ +.+.++..++| |.++++.++.+...++||
T Consensus        62 ~~~~~~~~l~~G-~vs~pi~~~~G-~~I~~v~~~~~~~~~~~E  102 (102)
T 2kgj_A           62 DELKNAGLKEKG-QLSGVIKSSVG-FLIVRLDDIQAAHHHHHH  102 (102)
T ss_dssp             HHHHTTCCCSTT-CEEEEEEETTE-EEEEEEEEEECSSTTSCC
T ss_pred             HHHHHHHHHCCC-CCCCCEEECCE-EEEEEEEEEECCCCCCCC
T ss_conf             799999982899-83435797999-999999368655544569


No 28 
>>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:121-151,A:258-392)
Probab=94.24  E-value=0.26  Score=25.92  Aligned_cols=136  Identities=11%  Similarity=0.152  Sum_probs=66.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf             489999999999999999870889997899860138999-------9999999999999998498248899999996347
Q gi|254781158|r   51 VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI-------LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP  123 (631)
Q Consensus        51 I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qv-------l~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p  123 (631)
                      ++-.+...++...  +-+++.+..+..-+.....++.+.       ..+.....++.+.++...+.++...|...+... 
T Consensus        15 ~~~~~~~~~~~~~--~~~~~~~~~~~TleeLk~~ire~le~~~~~~~~~~~~~~ild~L~e~~~~dlPeslv~~e~~~l-   91 (166)
T 1t11_A           15 VTDADVAEMLETL--RKQQRFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVL-   91 (166)
T ss_dssp             --CTHHHHHHHHH--HHHHGGSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTBCSCCCEEECHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
T ss_conf             3207899999998--7652708754557899999999999999999998888789999997436679807899999999-


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             65542102398999999986110056-77678887754445554301454220022233455432111233321000012
Q gi|254781158|r  124 LFHGKDNKFSHDVFVSRLAREGINEK-EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV  202 (631)
Q Consensus       124 ~Fq~~~G~Fd~~~~~~~L~~~g~t~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~  202 (631)
                                ...|...+.+.|++.+ .|.+.++......-....+..          .+.                  -
T Consensus        92 ----------~~~~~~~l~~~g~~~ee~~~ee~~~~Aek~vK~~lil~----------~IA------------------~  133 (166)
T 1t11_A           92 ----------RQQAAQRFGGNVEAAAQLPRELFEEQAKRRVVVGLLLG----------EVI------------------R  133 (166)
T ss_dssp             ----------HHHHHHHSSCSHHHHTTSCGGGTHHHHHHHHHHHHHHH----------HHH------------------H
T ss_pred             ----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH------------------H
T ss_conf             ----------99999882778344446678899999999999999999----------999------------------9


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             3456789889999976566655545
Q gi|254781158|r  203 PAIADPSNAVLTQWFEKYKDNYRAP  227 (631)
Q Consensus       203 ~~~~~~td~el~~yy~~nk~~f~~p  227 (631)
                      ...+.||+++|..++..--..|..+
T Consensus       134 ~e~I~vseeEi~~~i~~~A~~yg~~  158 (166)
T 1t11_A          134 THELKADEEKVKALITEMATAYEDP  158 (166)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHCC---
T ss_pred             HHCCCCCHHHHHHHHHHHHHHCCCH
T ss_conf             9789889999999999999846998


No 29 
>>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:121-151,A:258-392)
Probab=92.96  E-value=0.22  Score=26.48  Aligned_cols=143  Identities=10%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHH
Q ss_conf             8248899999996347655421023-98999999986110056776788877544455543014--54220022233455
Q gi|254781158|r  108 LEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKR  184 (631)
Q Consensus       108 i~vsd~~v~~~i~~~p~Fq~~~G~F-d~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~--~~~~~~~~~~~~~~  184 (631)
                      -.|+|..|..++....--|...+.| +-+.|+..++..--  .++.... .....++++..+..  .+-+|+..++..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~TleeLk~~ire~le--~~~~~~~-~~~~~~~ild~L~e~~~~dlPeslv~~e~~   89 (166)
T 1t11_A           13 AEVTDADVAEMLETLRKQQRFGVAEGGVDALKAEVRKNME--RELKQAI-KARIKEQAIEGLVKENEIQVPSALIDQEIN   89 (166)
T ss_dssp             C---CTHHHHHHHHHHHHHGGSTTTTHHHHHHHHHHHHHH--HHHHHHH-HHHHHTTTCTTBCSCCCEEECHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             3432078999999987652708754557899999999999--9999999-988887899999974366798078999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             43211123332100001234567898899999765666555454433222-21100000001257889998755554555
Q gi|254781158|r  185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY-ILFDVHEKEKKIEISNDELQAEYEKNKEK  263 (631)
Q Consensus       185 ~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~y-v~~~~~~~~~~~~vt~~ei~~~Y~~~~~~  263 (631)
                      .......-.+-.            ....+.   +..+..++....+.+.. +.+..-.-...+.||++++..+++.....
T Consensus        90 ~l~~~~~~~l~~------------~g~~~e---e~~~ee~~~~Aek~vK~~lil~~IA~~e~I~vseeEi~~~i~~~A~~  154 (166)
T 1t11_A           90 VLRQQAAQRFGG------------NVEAAA---QLPRELFEEQAKRRVVVGLLLGEVIRTHELKADEEKVKALITEMATA  154 (166)
T ss_dssp             HHHHHHHHHSSC------------SHHHHT---TSCGGGTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCC------------CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             999999988277------------834444---66788999999999999999999999978988999999999999984


Q ss_pred             HHHHH
Q ss_conf             43321
Q gi|254781158|r  264 YFSPE  268 (631)
Q Consensus       264 f~~pe  268 (631)
                      |+.+.
T Consensus       155 yg~~~  159 (166)
T 1t11_A          155 YEDPS  159 (166)
T ss_dssp             C----
T ss_pred             CCCHH
T ss_conf             69989


No 30 
>>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae} (A:)
Probab=91.45  E-value=0.75  Score=22.93  Aligned_cols=38  Identities=5%  Similarity=0.163  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             38999999999999999999849824889999999634
Q gi|254781158|r   85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS  122 (631)
Q Consensus        85 l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~  122 (631)
                      +..+..+.++.+.++.+..+...+.++...|...+...
T Consensus        81 ~~~~~~~~~~~~~i~~~l~~~~~~~lpe~~i~~e~~~~  118 (218)
T 1zxj_A           81 LTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGL  118 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             99999999999999999987488889999999999998


No 31 
>>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structure initiative; 1.70A {Plasmodium falciparum 3D7} PDB: 2auc_A (A:80-146)
Probab=66.86  E-value=6.3  Score=16.88  Aligned_cols=43  Identities=5%  Similarity=0.164  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999999984982488999999963476554210239899999998
Q gi|254781158|r   96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA  142 (631)
Q Consensus        96 ~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~  142 (631)
                      ..-+.+....+|+.+|++++...+...    +.+|+.|-+-|..++.
T Consensus        24 ~~el~~~l~~lg~~~~~~e~~~~~~d~----d~dg~I~~~eF~~~~~   66 (67)
T 2qac_A           24 KSQMKNILTTWGDALTDQEAIDALNAF----SSEDNIDYKLFCEDIL   66 (67)
T ss_dssp             HHHHHHHHHHSSSCCCHHHHHHHHHHH----CSSSEEEHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHC----CCCCCCCHHHHHHHHH
T ss_conf             999999999808999999999999964----9899894999999970


No 32 
>>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} (C:89-149)
Probab=66.34  E-value=6.5  Score=16.82  Aligned_cols=47  Identities=17%  Similarity=0.275  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999999999849824889999999634765542102398999999986
Q gi|254781158|r   94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus        94 i~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      |...-+.+....+|+.+|++++...++..   .+.+|+.|-+.|..++.+
T Consensus        14 I~~~El~~~l~~~g~~~~~~~~~~l~~~~---~d~dG~I~~~eF~~~~~~   60 (61)
T 2mys_C           14 VMGAELRHVLATLGEKMTEEEVEELMKGQ---EDSNGCINYEAFVKHIMS   60 (61)
T ss_pred             EEHHHHHHHHHHHCCCCCHHHHHHHHHCC---CCCCCEEEHHHHHHHHHC
T ss_conf             73389999999808999899999999507---899986869999999855


No 33 
>>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} (C:80-156)
Probab=56.87  E-value=9.5  Score=15.73  Aligned_cols=49  Identities=18%  Similarity=0.228  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             9999999998498248899999996347655421023989999999861
Q gi|254781158|r   96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE  144 (631)
Q Consensus        96 ~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~  144 (631)
                      ..-+......+|..+++.+|...+...-.-.|.+|..+-+.|..++...
T Consensus        24 ~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~d~dG~I~~~eF~~~~~~~   72 (77)
T 1wdc_C           24 GAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAG   72 (77)
T ss_dssp             HHHHHHHHHHSSSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCC
T ss_conf             8999999998189999999999999866279999768699999999349


No 34 
>>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} (A:111-162)
Probab=54.88  E-value=10  Score=15.53  Aligned_cols=44  Identities=14%  Similarity=0.245  Sum_probs=34.0

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999849824889999999634765542102398999999986
Q gi|254781158|r   98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus        98 ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      =|....+++|+.++++++...|...-.  |-+|+.|-+-|.+++.+
T Consensus         7 el~~~l~~~g~~l~~~ei~~mi~~~D~--d~dG~I~~~EF~~~~~~   50 (52)
T 1top_A            7 ELGEILRATGEHVTEEDIEDLMKDSDK--NNDGRIDFDEFLKMMEG   50 (52)
T ss_dssp             HHHHHHHTTTCCCCHHHHHHHHHHHCT--TCSSSBCHHHHHHHHHS
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHCC--CCCCCEEHHHHHHHHHH
T ss_conf             999887324787879999999998689--99991969999999971


No 35 
>>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} (A:1-217)
Probab=50.41  E-value=12  Score=15.07  Aligned_cols=20  Identities=5%  Similarity=-0.017  Sum_probs=15.1

Q ss_pred             HHHHHHCCCCHHHHHHHHHH
Q ss_conf             65542102398999999986
Q gi|254781158|r  124 LFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus       124 ~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      .|.|++|.+|.+.+...++.
T Consensus        22 pf~~~d~~iD~~~~~~~i~~   41 (217)
T 3d0c_A           22 PFLEGTREIDWKGLDDNVEF   41 (217)
T ss_dssp             CBCTTTCCBCHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHH
T ss_conf             87799998399999999999


No 36 
>>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} (B:91-151)
Probab=43.40  E-value=15  Score=14.37  Aligned_cols=44  Identities=14%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999999849824889999999634765542102398999999986
Q gi|254781158|r   97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus        97 ~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      .-+.+....+|..++++++...+.-.   .+.+|+.|-+-|..++.+
T Consensus        17 ~El~~~l~~~g~~~~~~~~~~~~~~D---~d~dG~I~~~EF~~~~~~   60 (61)
T 1w7j_B           17 AELRHVLTTLGEKMTEEEVETVLAGH---EDSNGCINYEAFLKHILS   60 (61)
T ss_dssp             HHHHHHHHHSSSCCCHHHHHHHHTTC---CCTTSEEEHHHHHHHTC-
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHC---CCCCCCEEHHHHHHHHHC
T ss_conf             99999999808999999999998318---899993959999999855


No 37 
>>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} (B:93-166)
Probab=43.00  E-value=16  Score=14.33  Aligned_cols=50  Identities=8%  Similarity=0.039  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999999999849824889999999634765542102398999999986
Q gi|254781158|r   92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus        92 ~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      ..|...-+......+|..+|+.++...+....  .+.+|.+|-..|..++..
T Consensus        18 G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~D--~d~dg~I~~~eF~~~~~~   67 (74)
T 2mys_B           18 GSIKKSFLEELLTTGGGRFTPEEIKNMWAAFP--PDVAGNVDYKNICYVITH   67 (74)
T ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC--CCCCCCEEHHHHHHHHCC
T ss_conf             00445678777887525899999999999848--999891929999999757


No 38 
>>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} (A:)
Probab=40.10  E-value=6.7  Score=16.74  Aligned_cols=51  Identities=12%  Similarity=0.098  Sum_probs=31.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             00012578899987555545--5543321123788753000014788875303
Q gi|254781158|r  242 KEKKIEISNDELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       242 ~~~~~~vt~~ei~~~Y~~~~--~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      +...+.+|+++|+.+|...-  .+...+..+.+..+.|.+.++|..++..+..
T Consensus        43 ~v~nl~~te~~l~~~F~~~G~v~~v~i~~~~~~afV~f~~~e~A~~Ai~~l~~   95 (121)
T 2bz2_A           43 YVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNG   95 (121)
T ss_dssp             EEECSSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCC
T ss_conf             87899699999999999868850124347798888996680999999996599


No 39 
>>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A (A:)
Probab=39.41  E-value=18  Score=13.98  Aligned_cols=29  Identities=7%  Similarity=0.033  Sum_probs=12.4

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             42102398999999986110056776788
Q gi|254781158|r  127 GKDNKFSHDVFVSRLAREGINEKEYIDHY  155 (631)
Q Consensus       127 ~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~  155 (631)
                      +.+|..|...++.+|...|++++.....+
T Consensus        44 d~~G~I~~~el~~~l~~~gl~~~el~~i~   72 (121)
T 3fia_A           44 PISGFITGDQARNFFFQSGLPQPVLAQIW   72 (121)
T ss_dssp             CBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred             CCCCEECHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             99984829999999999299999999999


No 40 
>>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C (C:)
Probab=37.42  E-value=19  Score=13.78  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=12.0

Q ss_pred             HHHCCCCHHHHHHHHHHHHHH
Q ss_conf             421023989999999861100
Q gi|254781158|r  127 GKDNKFSHDVFVSRLAREGIN  147 (631)
Q Consensus       127 ~~~G~Fd~~~~~~~L~~~g~t  147 (631)
                      +.+|..+.+-|..+|+..|+.
T Consensus        23 d~~G~I~~~el~~~l~~~g~~   43 (159)
T 2ovk_C           23 GRDGDVDAAKVGDLLRCLGMN   43 (159)
T ss_dssp             TSSSEEEGGGHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHCCCC
T ss_conf             999809799999999982898


No 41 
>>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A (A:)
Probab=35.45  E-value=8.4  Score=16.08  Aligned_cols=46  Identities=9%  Similarity=0.192  Sum_probs=26.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|...-.--...-.+.+..+.|.+.++|..++..+..
T Consensus        22 ~~~~~~l~~~f~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~~   67 (103)
T 2dgu_A           22 TVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG   67 (103)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf             8999999999987451420111121257886899999999998689


No 42 
>>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=34.77  E-value=11  Score=15.38  Aligned_cols=47  Identities=17%  Similarity=0.144  Sum_probs=29.9

Q ss_pred             CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             5788999875555455--5433211237887530000147888753036
Q gi|254781158|r  247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG  293 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g  293 (631)
                      .+++++|+.+|...-.  ....+..+.+..|.|.+.+.|+.++..++..
T Consensus        19 ~~te~~l~~~f~~~G~i~~~~~~~~~~~afV~f~~~e~A~~Ai~~l~g~   67 (93)
T 2cqh_A           19 AVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGK   67 (93)
T ss_dssp             TCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCHHHHHHHHHHCCCC
T ss_conf             7557899988987198148888535648899849999999999980798


No 43 
>>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=34.40  E-value=9.4  Score=15.77  Aligned_cols=50  Identities=12%  Similarity=0.137  Sum_probs=29.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             00125788999875555455--543321123788753000014788875303
Q gi|254781158|r  243 EKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       243 ~~~~~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      ...+.+|+++|+.+|...-.  .......+....+.|.+.++|+.+...++.
T Consensus        20 V~nl~~te~dl~~~F~~~G~I~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~~   71 (97)
T 1x5p_A           20 VYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNG   71 (97)
T ss_dssp             EECSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTT
T ss_pred             EEECCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf             9954899999999999819852886258897899998987999999998599


No 44 
>>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=34.32  E-value=11  Score=15.35  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=29.6

Q ss_pred             CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             578899987555545--55433211237887530000147888753036
Q gi|254781158|r  247 EISNDELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG  293 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~--~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g  293 (631)
                      .+|+++|+.+|...-  .+......+....|.|.+.+.|+.+++.++..
T Consensus        38 ~~te~~l~~~F~~~G~I~~~~~~~~k~~afV~f~~~e~A~~A~~~l~~~   86 (114)
T 2cq2_A           38 GVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK   86 (114)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred             CCCHHHHHHHHCCCCCCCEEEEECCCEEEEEEECCHHHHHHHHHHHCCC
T ss_conf             8769999998768477748976047618999978889999999997888


No 45 
>>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} (A:118-132,A:255-301,A:415-432)
Probab=34.23  E-value=21  Score=13.45  Aligned_cols=37  Identities=11%  Similarity=-0.006  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             4554322333345679999888886556577654201
Q gi|254781158|r  362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG  398 (631)
Q Consensus       362 ~~~~evk~~I~~~l~~~~a~~~~~~~~~~i~d~~~~g  398 (631)
                      .++++.|+.|+..|..+.....-....+++-+.+...
T Consensus        22 eTLeeLK~~Irk~Le~e~e~~~~~~~k~~ild~Lve~   58 (80)
T 1w26_A           22 GSVEGLRAEVRKNXERELKSAIRNRVKSQAIEGLVKA   58 (80)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3799999998889999999999988778899987450


No 46 
>>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} (A:61-148)
Probab=34.13  E-value=21  Score=13.44  Aligned_cols=49  Identities=20%  Similarity=0.328  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999999999999849824889999999634765542102398999999986
Q gi|254781158|r   93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus        93 li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      .|...-+......++..++++++...+.....  +.+|+.+-+-|..++.+
T Consensus        39 ~i~~~el~~~l~~~~~~~~~~~~~~if~~~D~--d~dG~i~~~eF~~~~~~   87 (88)
T 1exr_A           39 LISAAELRHVMTNLGEKLTDDEVDEMIREADI--DGDGHINYEEFVRMMVS   87 (88)
T ss_dssp             CBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCS--SSSSSBCHHHHHHHHHC
T ss_pred             EECHHHHHHHHHHCCCCCCHHHHHHHHHHHCC--CCCCEEEHHHHHHHHHC
T ss_conf             49399997787502665789999999998589--99886859999999846


No 47 
>>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=32.27  E-value=9.6  Score=15.69  Aligned_cols=46  Identities=20%  Similarity=0.260  Sum_probs=24.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+..|...-.--...-.+....+.|.+.+.|+.+...++.
T Consensus        21 ~~te~~l~~~f~~~G~i~~~~~~~~~afV~f~~~~~a~~A~~~l~~   66 (92)
T 2dgt_A           21 TCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDN   66 (92)
T ss_dssp             SCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEECCEEEEEECCHHHHHHHHHHCCC
T ss_conf             8989999999998699867878111789997999999999998299


No 48 
>>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=31.26  E-value=13  Score=14.92  Aligned_cols=47  Identities=13%  Similarity=0.158  Sum_probs=23.6

Q ss_pred             CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             5788999875555455--5433211237887530000147888753036
Q gi|254781158|r  247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG  293 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g  293 (631)
                      .+|+++|+.+|...-.  ....+..+....+.|.+.+.|+.+..+...|
T Consensus        23 ~~te~~l~~~F~~~G~i~~~~~~~~~~~afV~f~~~~~A~~Ai~~~~~~   71 (85)
T 2ytc_A           23 TITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNK   71 (85)
T ss_dssp             TSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTT
T ss_pred             CCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHCCC
T ss_conf             8999999998604885787687035741178988999999999986199


No 49 
>>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} (A:1-219)
Probab=30.30  E-value=25  Score=13.03  Aligned_cols=18  Identities=6%  Similarity=0.017  Sum_probs=13.6

Q ss_pred             HHHHCCCCHHHHHHHHHH
Q ss_conf             542102398999999986
Q gi|254781158|r  126 HGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus       126 q~~~G~Fd~~~~~~~L~~  143 (631)
                      .+++|.+|.+.+...++.
T Consensus        26 f~~d~~iD~~~~~~~i~~   43 (219)
T 1xxx_A           26 FSGDGSLDTATAARLANH   43 (219)
T ss_dssp             BCTTSCBCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHH
T ss_conf             788969199999999999


No 50 
>>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A (A:95-158)
Probab=30.00  E-value=25  Score=13.00  Aligned_cols=44  Identities=5%  Similarity=0.118  Sum_probs=30.5

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999849824889999999634765542102398999999986
Q gi|254781158|r   98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus        98 ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      =+.+....+|...+++++...+....  .+.+|..+-+.|..++..
T Consensus        18 El~~~l~~~~~~~~~~~~~~~~~~~D--~~~dG~I~~~eF~~~~~~   61 (64)
T 2jnf_A           18 VMREILAELDETLSSEDLDAMIDEID--ADGSGTVDFEEFMGVMTG   61 (64)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHC--SSCCSEECSHHHHHHTSS
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHC--CCCCCCEEHHHHHHHHHC
T ss_conf             77776553025686999999999978--999993979999999755


No 51 
>>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} (A:70-140)
Probab=29.85  E-value=25  Score=12.99  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=24.3

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999984982488999999963476554210239899999998
Q gi|254781158|r   99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA  142 (631)
Q Consensus        99 l~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~  142 (631)
                      +......+|+.+|+++|...+....   ..+|+.|-+.|..++.
T Consensus        29 l~~~l~~~g~~~~~~e~~~~~~~~d---~~dg~I~~~eF~~~~~   69 (71)
T 1ggw_A           29 LRYVLTSLGEKLSNEEMDELLKGVP---VKDGMVNYHDFVQMIL   69 (71)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHTT---CSSCCSTTTHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHC---CCCCEECHHHHHHHHC
T ss_conf             9999998189999999999999977---9989996999999881


No 52 
>>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} (A:)
Probab=29.68  E-value=25  Score=12.97  Aligned_cols=47  Identities=9%  Similarity=-0.156  Sum_probs=23.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             24889999999634765542102398999999986110056776788
Q gi|254781158|r  109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY  155 (631)
Q Consensus       109 ~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~  155 (631)
                      .+|.+++...-..--.|=+.+|..+...+..+|...|+++..+...+
T Consensus         8 ~ls~e~~~~~~~~F~~~Dd~~G~I~~~el~~~l~~lg~~~~~~~~i~   54 (106)
T 1eh2_A            8 AVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW   54 (106)
T ss_dssp             SSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             26999999999999981899980819999999986489899999999


No 53 
>>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A (A:)
Probab=29.49  E-value=12  Score=15.11  Aligned_cols=46  Identities=11%  Similarity=0.134  Sum_probs=24.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|...-.-....-.+....+.|.+.+.|..++..++.
T Consensus        42 ~~te~~l~~~F~~fG~i~~~~~~~g~afV~f~~~~~A~~Ai~~l~g   87 (108)
T 2jvo_A           42 DVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHG   87 (108)
T ss_dssp             TCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf             7999999999986462211011011568998999999999998299


No 54 
>>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} (A:1-219)
Probab=28.97  E-value=26  Score=12.89  Aligned_cols=18  Identities=0%  Similarity=-0.070  Sum_probs=13.7

Q ss_pred             HHHHCCCCHHHHHHHHHH
Q ss_conf             542102398999999986
Q gi|254781158|r  126 HGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus       126 q~~~G~Fd~~~~~~~L~~  143 (631)
                      .+++|.+|.+.+...++.
T Consensus        24 f~~dg~iD~~~~~~~i~~   41 (219)
T 1xky_A           24 FDINGNIDFAKTTKLVNY   41 (219)
T ss_dssp             BCTTSSBCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHH
T ss_conf             689959499999999999


No 55 
>>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A (A:)
Probab=28.52  E-value=26  Score=12.84  Aligned_cols=18  Identities=0%  Similarity=-0.103  Sum_probs=13.2

Q ss_pred             HHHHCCCCHHHHHHHHHH
Q ss_conf             542102398999999986
Q gi|254781158|r  126 HGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus       126 q~~~G~Fd~~~~~~~L~~  143 (631)
                      .+++|..|.+.+...+..
T Consensus        20 f~~d~~ID~~~~~~~~~~   37 (309)
T 3fkr_A           20 FADTGDLDLASQKRAVDF   37 (309)
T ss_dssp             BCTTSSBCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHH
T ss_conf             896879599999999999


No 56 
>>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=27.95  E-value=13  Score=14.79  Aligned_cols=46  Identities=13%  Similarity=0.216  Sum_probs=21.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|.+.-.--..--.+....+.|.+.++|+.+.+.++.
T Consensus        20 ~~te~~l~~~f~~fG~v~~~~~~~~~afV~f~~~~~A~~Ai~~~~g   65 (90)
T 2dnp_A           20 ACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNG   65 (90)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHCCCCEEEECCCEEEEEECCHHHHHHHHHHCCC
T ss_conf             8989999999998699767756163559998999999999998299


No 57 
>>1b7f_A Protein (SXL-lethal protein); splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} (A:1-84)
Probab=26.37  E-value=17  Score=14.02  Aligned_cols=24  Identities=13%  Similarity=0.162  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             123788753000014788875303
Q gi|254781158|r  269 IRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       269 ~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+.+..+.|.+.++|+.++..++.
T Consensus        44 ~~g~afv~f~~~~~a~~a~~~l~g   67 (84)
T 1b7f_A           44 SYGYAFVDFTSEMDSQRAIKVLNG   67 (84)
T ss_dssp             ECSEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             211122234665776667764020


No 58 
>>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} (A:)
Probab=26.10  E-value=15  Score=14.45  Aligned_cols=46  Identities=11%  Similarity=0.154  Sum_probs=27.0

Q ss_pred             CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455-543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~-~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+++++|+.++...-- .-.....+.+..+.|.+.+.|+.+.+.+..
T Consensus        16 ~~t~~~l~~~f~~~G~~~~~~~~~~~~afV~f~~~~~a~~Ai~~l~g   62 (88)
T 1wg1_A           16 DSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQ   62 (88)
T ss_dssp             SCCHHHHHHHTCSSCCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHCC
T ss_conf             50056888777504861367531588228998999999999998599


No 59 
>>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} (A:1-217)
Probab=25.66  E-value=30  Score=12.51  Aligned_cols=20  Identities=15%  Similarity=0.305  Sum_probs=15.1

Q ss_pred             HHHHHHCCCCHHHHHHHHHH
Q ss_conf             65542102398999999986
Q gi|254781158|r  124 LFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus       124 ~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      .|.+.||.+|.+.+...++.
T Consensus        22 pf~~~d~~iD~~~~~~~i~~   41 (217)
T 3e96_A           22 PFRKSDGSIDWHHYKETVDR   41 (217)
T ss_dssp             CBCTTTCCBCHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHH
T ss_conf             96699988999999999999


No 60 
>>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=25.41  E-value=15  Score=14.45  Aligned_cols=46  Identities=24%  Similarity=0.325  Sum_probs=22.8

Q ss_pred             CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455--543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|...-.  .......+....+.|.+.++|..+.+.+..
T Consensus        26 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~afV~f~~~~~A~~Ai~~l~g   73 (99)
T 2cpd_A           26 STSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNG   73 (99)
T ss_dssp             TCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHCCCCEEEEEEECCCEEEEEEECCHHHHHHHHHHCCC
T ss_conf             778679999976279789999803321777886352778999987099


No 61 
>>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} (C:1-79)
Probab=25.22  E-value=30  Score=12.46  Aligned_cols=42  Identities=10%  Similarity=0.207  Sum_probs=31.2

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999999849824889999999634765542102398999999986
Q gi|254781158|r   99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus        99 l~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      |.+....+|+.+++.++...+...   .+.+|..+-+-|..++..
T Consensus        33 l~~~l~~lg~~~~~~e~~~~~~~D---~~~~G~I~f~EF~~~~~~   74 (79)
T 1wdc_C           33 LGDVCRCLGINPRNEDVFAVGGTH---KMGEKSLPFEEFLPAYEG   74 (79)
T ss_dssp             HHHHHHHTTCCCCHHHHHHTTCCS---STTSCEECHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHH
T ss_conf             999999827998688875554430---220344545666543110


No 62 
>>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B (B:)
Probab=25.19  E-value=30  Score=12.45  Aligned_cols=40  Identities=5%  Similarity=0.022  Sum_probs=24.6

Q ss_pred             CCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             24889999999634765-54210239899999998611005
Q gi|254781158|r  109 EADHGRVWGEIARSPLF-HGKDNKFSHDVFVSRLAREGINE  148 (631)
Q Consensus       109 ~vsd~~v~~~i~~~p~F-q~~~G~Fd~~~~~~~L~~~g~t~  148 (631)
                      ..|.+++...-..-..| .+.+|..+...+...|...+.+.
T Consensus         9 ~lt~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~   49 (153)
T 2ovk_B            9 KLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP   49 (153)
T ss_dssp             TCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHH
T ss_conf             99999999999999997789997288299999999998756


No 63 
>>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} (A:)
Probab=24.86  E-value=15  Score=14.35  Aligned_cols=46  Identities=13%  Similarity=0.194  Sum_probs=22.8

Q ss_pred             CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455--543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|...-.  ....+..+....+.|.+.+.|.++...++.
T Consensus        18 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~~fv~f~~~~~A~~A~~~l~g   65 (89)
T 2wbr_A           18 QIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNN   65 (89)
T ss_dssp             TCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHCCCCCCCCEECCCCCEEEEEEECCHHHHHHHHHHHCC
T ss_conf             888999997671244533000145761999998121788999998689


No 64 
>>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} (B:)
Probab=24.62  E-value=24  Score=13.06  Aligned_cols=46  Identities=20%  Similarity=0.192  Sum_probs=24.3

Q ss_pred             CCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455--------543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKE--------KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~--------~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+++++|+.+|...-.        ...+...+....+.|.+.++|+.+...++.
T Consensus        37 ~~~e~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~   90 (110)
T 1oo0_B           37 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG   90 (110)
T ss_dssp             TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCC
T ss_conf             898999999998459879999974178887650679998899999999998099


No 65 
>>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=24.47  E-value=15  Score=14.38  Aligned_cols=46  Identities=11%  Similarity=0.004  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455--543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|...-.  .......+....|.|.+.+.|+.+++.++.
T Consensus        26 ~~te~~l~~~f~~~G~i~~~~~~~~~~~afV~f~~~~~A~~Ai~~l~~   73 (101)
T 2cq1_A           26 EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA   73 (101)
T ss_dssp             TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCHHHHHHHHHHHCC
T ss_conf             898999997664035220355314633899996999999999999759


No 66 
>>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=24.27  E-value=21  Score=13.51  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             23788753000014788875303
Q gi|254781158|r  270 RTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       270 ~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      +....+.|.+.+.|+.+++.++.
T Consensus        54 ~~~~fv~f~~~e~a~~Ai~~lng   76 (102)
T 1x5s_A           54 RGFGFVTFENIDDAKDAMMAMNG   76 (102)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCHHHHHHHHHHHCC
T ss_conf             57535787688999999998099


No 67 
>>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:29-108)
Probab=24.01  E-value=21  Score=13.43  Aligned_cols=25  Identities=8%  Similarity=0.161  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             1123788753000014788875303
Q gi|254781158|r  268 EIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       268 e~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      ..+....+.|.+.++|..+...++.
T Consensus        40 ~~~g~afv~f~~~~~A~~ai~~l~~   64 (80)
T 2qfj_A           40 KHKGFAFVEYEVPEAAQLALEQMNS   64 (80)
T ss_dssp             CCCSEEEEEESSHHHHHHHHHHHSS
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf             4342024784266888999986237


No 68 
>>3h2u_B Raver-1; focal adhesion, actin cytoskeleton, RNP motif, RNA binding, alternative splicing, cytoplasm, nucleus, phosphoprotein, RNA-binding; 2.75A {Homo sapiens} PDB: 3h2v_E (B:20-91)
Probab=23.97  E-value=15  Score=14.39  Aligned_cols=46  Identities=13%  Similarity=0.270  Sum_probs=23.6

Q ss_pred             CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455-543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~-~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+++++|+.++...-. .-.....+....+.|.+.++|+.+...++.
T Consensus        12 ~~~~~~l~~~f~~~G~~~~~~~~~~~~afV~f~~~~~a~~ai~~l~~   58 (72)
T 3h2u_B           12 DVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQ   58 (72)
T ss_dssp             TCCHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHCCCEEEEECCCCCEEEEEECCHHHHHHHHHCCCC
T ss_conf             68899999999865968999538787899998425878776531322


No 69 
>>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} (A:)
Probab=23.81  E-value=18  Score=13.99  Aligned_cols=46  Identities=11%  Similarity=0.122  Sum_probs=24.4

Q ss_pred             CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455--543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+++++|+.+|...-.  .......+....|.|.+.++|..+...+..
T Consensus        28 ~~~~~~L~~~f~~~G~v~~~~~~~~~~~afV~f~~~~~A~~Ai~~l~~   75 (97)
T 1why_A           28 NTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRG   75 (97)
T ss_dssp             SCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCHHHHHHHHHHHCC
T ss_conf             869999999875015531388712211888765898999999999788


No 70 
>>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} (A:117-202)
Probab=23.57  E-value=26  Score=12.83  Aligned_cols=24  Identities=13%  Similarity=0.182  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             123788753000014788875303
Q gi|254781158|r  269 IRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       269 ~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+....+.|.+.++|..+...+.+
T Consensus        42 ~~g~~fV~f~~~e~a~~ai~~l~~   65 (86)
T 2ghp_A           42 SRRFAYIDVTSKEDARYCVEKLNG   65 (86)
T ss_dssp             -CCEEEEECSSHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             667522235666788889987073


No 71 
>>3fwb_A Cell division control protein 31; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.50A {Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A (A:93-161)
Probab=23.27  E-value=33  Score=12.22  Aligned_cols=44  Identities=14%  Similarity=0.254  Sum_probs=30.3

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999849824889999999634765542102398999999986
Q gi|254781158|r   98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus        98 ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      -+......+|...+++++...+.....  +.+|+.+-+.|..++.+
T Consensus        25 e~~~~l~~~~~~~~~~~~~~~~~~~D~--d~~g~I~~~eF~~~~~~   68 (69)
T 3fwb_A           25 NLRRVAKELGETLTDEELRAMIEEFDL--DGDGEINENEFIAICTD   68 (69)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHTTCS--SSSSSEEHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCEEHHHHHHHHHC
T ss_conf             778888764045869999999998589--99991969999999855


No 72 
>>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=22.98  E-value=22  Score=13.30  Aligned_cols=46  Identities=15%  Similarity=0.203  Sum_probs=22.5

Q ss_pred             CCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455---543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKE---KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~---~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|...-.   .......+....+.|.+.++|..++..++.
T Consensus        30 ~~~e~~l~~~F~~~G~v~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g   78 (97)
T 2e5j_A           30 DARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQG   78 (97)
T ss_dssp             TCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEEECCCCCEEEEEECC
T ss_conf             9999999999998698503011347763499998302442002453134


No 73 
>>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} (A:85-148)
Probab=22.69  E-value=34  Score=12.14  Aligned_cols=45  Identities=11%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             99999999849824889999999634765542102398999999986
Q gi|254781158|r   97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus        97 ~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~  143 (631)
                      .-+.+..+.+|..++++++...+.....  +.+|..+-+.|..++.+
T Consensus        19 ~el~~~l~~~~~~~~~~~~~~~~~~~D~--d~dg~I~~~eF~~~~~~   63 (64)
T 1m45_A           19 GDLRYMLTGLGEKLTDAEVDELLKGVEV--DSNGEIDYKKFIEDVLR   63 (64)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHTTCCC--CTTSEEEHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCEEHHHHHHHHHC
T ss_conf             9999999982899999999999998688--99994979999999975


No 74 
>>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} (A:433-550)
Probab=22.01  E-value=35  Score=12.06  Aligned_cols=28  Identities=11%  Similarity=0.052  Sum_probs=12.9

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2102398999999986110056776788
Q gi|254781158|r  128 KDNKFSHDVFVSRLAREGINEKEYIDHY  155 (631)
Q Consensus       128 ~~G~Fd~~~~~~~L~~~g~t~~~~~~~~  155 (631)
                      .+|..+.+.+..+|...|+++..+...+
T Consensus        38 ~~G~Is~~el~~~l~~~~l~~~~~~~i~   65 (118)
T 2qpt_A           38 ADGKLSGSKAKTWMVGTKLPNSVLGRIW   65 (118)
T ss_dssp             SSSEECHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             CCCEECHHHHHHHHHHCCCCHHHHHHHC
T ss_conf             8887638999999997499878997633


No 75 
>>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=21.84  E-value=19  Score=13.72  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             578899987555545--5543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~--~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|...-  ..+..+..+....+.|.+.++|..+++.+..
T Consensus        26 ~~t~~~l~~~f~~~G~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g   73 (99)
T 2cpj_A           26 DITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDN   73 (99)
T ss_dssp             TCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf             788999999999739861763316774799998999999999998199


No 76 
>>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} (A:1-245)
Probab=21.40  E-value=36  Score=11.98  Aligned_cols=16  Identities=13%  Similarity=0.144  Sum_probs=12.5

Q ss_pred             HHHCCCCHHHHHHHHH
Q ss_conf             4210239899999998
Q gi|254781158|r  127 GKDNKFSHDVFVSRLA  142 (631)
Q Consensus       127 ~~~G~Fd~~~~~~~L~  142 (631)
                      +++|..|.+.+...++
T Consensus        17 ~~d~~iD~~~~~~~i~   32 (245)
T 3eb2_A           17 DAEGRVRADVMGRLCD   32 (245)
T ss_dssp             CTTSCBCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHH
T ss_conf             8785969999999999


No 77 
>>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} (A:)
Probab=21.34  E-value=36  Score=11.97  Aligned_cols=19  Identities=32%  Similarity=0.669  Sum_probs=12.9

Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q ss_conf             5678988999997656665
Q gi|254781158|r  205 IADPSNAVLTQWFEKYKDN  223 (631)
Q Consensus       205 ~~~~td~el~~yy~~nk~~  223 (631)
                      .+.||++||+++|++...+
T Consensus        38 aP~Pte~EL~ewwEe~lkn   56 (110)
T 2hg7_A           38 APLPTQAELETWWEELQKN   56 (110)
T ss_dssp             SCCCCHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHC
T ss_conf             8898899999999998647


No 78 
>>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=21.30  E-value=22  Score=13.29  Aligned_cols=46  Identities=13%  Similarity=0.115  Sum_probs=20.7

Q ss_pred             CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455-543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~-~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|...-. ....-..+....+.|.+.++|..++..+..
T Consensus        26 ~~t~~~l~~~f~~~G~v~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~   72 (108)
T 1x4c_A           26 SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDN   72 (108)
T ss_dssp             SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSS
T ss_pred             CCCHHHHHHHHHHCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHCC
T ss_conf             88899999997630112310111020579986999999999999788


No 79 
>>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} (A:1-221)
Probab=21.11  E-value=36  Score=11.94  Aligned_cols=18  Identities=6%  Similarity=-0.165  Sum_probs=14.2

Q ss_pred             HHHHCCCCHHHHHHHHHH
Q ss_conf             542102398999999986
Q gi|254781158|r  126 HGKDNKFSHDVFVSRLAR  143 (631)
Q Consensus       126 q~~~G~Fd~~~~~~~L~~  143 (631)
                      .+++|.+|.+.+...++.
T Consensus        28 f~~d~~iD~~~~~~~i~~   45 (221)
T 3cpr_A           28 FTESGDIDIAAGREVAAY   45 (221)
T ss_dssp             BCTTSCBCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHH
T ss_conf             589959399999999999


No 80 
>>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.86  E-value=29  Score=12.61  Aligned_cols=24  Identities=17%  Similarity=0.148  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             123788753000014788875303
Q gi|254781158|r  269 IRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       269 ~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+.+..+.|.+.++|+.++..|+.
T Consensus        51 ~~g~afV~f~~~e~A~~Ai~~l~~   74 (109)
T 2dis_A           51 NRGFAFVEYESHRAAAMARRKLMP   74 (109)
T ss_dssp             TCCEEEEEESSHHHHHHHHTTTTT
T ss_pred             CCEEEEEEECCHHHHHHHHHHHCC
T ss_conf             640258998899999999998532


No 81 
>>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} (A:1-83)
Probab=20.82  E-value=24  Score=13.15  Aligned_cols=46  Identities=13%  Similarity=0.254  Sum_probs=23.6

Q ss_pred             CCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455--------543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKE--------KYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~--------~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|...-.        ....+..+....+.|.+.+.|+.+...+..
T Consensus        13 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~ai~~l~g   66 (83)
T 1fxl_A           13 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG   66 (83)
T ss_dssp             TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf             798999999997059989999996289897376899983585887789885101


No 82 
>>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} (A:)
Probab=20.45  E-value=37  Score=11.85  Aligned_cols=46  Identities=22%  Similarity=0.328  Sum_probs=24.9

Q ss_pred             CCCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             5788999875555455543---------321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNKEKYF---------SPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~~~f~---------~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+++++|+..+.+.-..|+         ....+.+..+.|.+.+.|+.++..++.
T Consensus        19 ~~~~~~l~~~l~~~f~~~g~i~~v~~~~~~~~k~~afv~f~~~~~A~~a~~~l~~   73 (97)
T 1nu4_A           19 KIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG   73 (97)
T ss_dssp             TSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHCC
T ss_conf             9999999999999714588679999804999585699998999999999998499


No 83 
>>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} (B:1-90)
Probab=20.39  E-value=37  Score=11.84  Aligned_cols=46  Identities=11%  Similarity=0.179  Sum_probs=30.5

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             9999998498248899999996347655421023989999999861
Q gi|254781158|r   99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE  144 (631)
Q Consensus        99 l~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~  144 (631)
                      +......+|..+|++++...+.....=.+.+|..|-+.|..++.+.
T Consensus        32 l~~~l~~~g~~~s~~~~~~l~~~~~~D~~~~g~I~~~EF~~~~~~~   77 (90)
T 1w7j_B           32 CGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAV   77 (90)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999998613898999999998875311346840089998776753


No 84 
>>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:)
Probab=20.30  E-value=20  Score=13.58  Aligned_cols=46  Identities=15%  Similarity=0.107  Sum_probs=27.2

Q ss_pred             CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             578899987555545--5543321123788753000014788875303
Q gi|254781158|r  247 EISNDELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       247 ~vt~~ei~~~Y~~~~--~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      .+|+++|+.+|...-  ........+.+..+.|.+.++|+.+.+.+..
T Consensus        26 ~~~e~~l~~~F~~~G~i~~~~~~~~~~~afV~f~~~~~A~~a~~~l~~   73 (104)
T 1wex_A           26 SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAAD   73 (104)
T ss_dssp             SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCCCEEEEEECEEEEEEECCHHHHHHHHHHHCC
T ss_conf             998999999986313342102321010478895899999999998737


No 85 
>>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=20.20  E-value=26  Score=12.84  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             237887530000147888753036514
Q gi|254781158|r  270 RTVEQLVFPNQKEADEAFQSLKKGKKF  296 (631)
Q Consensus       270 ~~~~~i~~~~~~~A~~~~~~l~~g~~F  296 (631)
                      +....+.|.+.+.|+.+++.+..+..|
T Consensus        58 ~g~afV~f~~~~~a~~Ai~~l~~~~~~   84 (107)
T 2cph_A           58 RGFGFVDFITKQDAKKAFNALCHSTHL   84 (107)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred             CCEEEEEECCHHHHHHHHHHCCCCCEE
T ss_conf             777999989999999999970199588


No 86 
>>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A (A:91-172)
Probab=20.06  E-value=26  Score=12.85  Aligned_cols=25  Identities=12%  Similarity=0.092  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             1123788753000014788875303
Q gi|254781158|r  268 EIRTVEQLVFPNQKEADEAFQSLKK  292 (631)
Q Consensus       268 e~~~~~~i~~~~~~~A~~~~~~l~~  292 (631)
                      ..+....+.|.+.++|+.+...+++
T Consensus        44 ~~~g~afV~f~~~~~a~~a~~~ln~   68 (82)
T 2g4b_A           44 LSKGYAFCEYVDINVTDQAIAGLNG   68 (82)
T ss_dssp             SEEEEEEEEESSTTHHHHHHHHHTT
T ss_pred             CCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf             6333099998689999999997099


Done!