Query gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 631 No_of_seqs 167 out of 2728 Neff 8.8 Searched_HMMs 33803 Date Wed Jun 1 22:38:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781158.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2itk_A Peptidyl-prolyl CIS-tr 99.7 4.4E-20 1.3E-24 148.6 -7.8 147 206-355 17-167 (167) 2 >1j6y_A Peptidyl-prolyl CIS-tr 99.7 3.3E-19 9.8E-24 142.9 -3.4 129 214-355 3-139 (139) 3 >2kgj_A Peptidyl-prolyl CIS-tr 99.7 1.4E-17 4.1E-22 132.3 0.8 98 265-365 1-102 (102) 4 >1jns_A Peptidyl-prolyl CIS-tr 99.6 2.8E-16 8.4E-21 123.7 2.7 88 268-357 2-92 (92) 5 >3gpk_A PPIC-type peptidyl-pro 99.6 3.2E-16 9.6E-21 123.3 2.9 96 265-362 3-109 (112) 6 >1zk6_A Foldase protein PRSA; 99.6 2.3E-16 6.8E-21 124.3 1.2 89 266-356 1-93 (93) 7 >1m5y_A SurviVal protein, surv 99.6 9.8E-16 2.9E-20 120.2 3.0 82 277-360 25-109 (110) 8 >2jzv_A Foldase protein PRSA; 99.6 5.8E-16 1.7E-20 121.7 1.2 75 279-355 32-111 (111) 9 >1eq3_A Peptidyl-prolyl CIS/tr 99.6 6.5E-16 1.9E-20 121.4 1.1 87 269-357 2-96 (96) 10 >1yw5_A Peptidyl prolyl CIS/tr 99.5 5E-16 1.5E-20 122.1 -0.5 96 258-355 17-116 (116) 11 >2pv1_A Chaperone SURA; surviV 99.5 6.4E-15 1.9E-19 114.8 5.1 89 267-357 12-103 (103) 12 >1m5y_A SurviVal protein, surv 99.5 1.9E-15 5.5E-20 118.4 1.8 94 266-361 3-110 (111) 13 >1m5y_A SurviVal protein, surv 98.8 4.4E-08 1.3E-12 70.2 8.9 67 39-110 5-71 (78) 14 >2nsa_A Trigger factor, TF; ch 98.1 0.0003 9E-09 45.1 14.3 118 50-176 44-167 (170) 15 >1m5y_A SurviVal protein, surv 97.2 0.0011 3.3E-08 41.4 6.8 72 110-185 1-73 (93) 16 >2pv1_A Chaperone SURA; surviV 97.2 0.0021 6.1E-08 39.7 8.1 79 499-579 24-102 (103) 17 >1m5y_A SurviVal protein, surv 97.2 0.002 5.9E-08 39.8 7.9 82 499-582 27-108 (110) 18 >3gpk_A PPIC-type peptidyl-pro 97.2 0.0019 5.7E-08 39.9 7.7 83 499-583 25-107 (112) 19 >1m5y_A SurviVal protein, surv 96.9 0.0045 1.3E-07 37.4 7.5 82 499-583 25-109 (111) 20 >1jns_A Peptidyl-prolyl CIS-tr 96.9 0.004 1.2E-07 37.8 6.8 78 500-579 14-91 (92) 21 >2jzv_A Foldase protein PRSA; 96.6 0.01 3E-07 35.2 7.3 77 499-578 32-111 (111) 22 >1j6y_A Peptidyl-prolyl CIS-tr 96.4 0.0044 1.3E-07 37.5 4.4 76 501-577 63-138 (139) 23 >1yw5_A Peptidyl prolyl CIS/tr 96.2 0.034 1E-06 31.7 8.1 78 499-577 38-115 (116) 24 >2itk_A Peptidyl-prolyl CIS-tr 96.2 0.034 1E-06 31.7 8.0 78 500-578 90-167 (167) 25 >1zk6_A Foldase protein PRSA; 96.0 0.02 6E-07 33.2 6.3 76 501-578 16-92 (93) 26 >1eq3_A Peptidyl-prolyl CIS/tr 95.6 0.014 4.2E-07 34.2 4.1 75 502-579 15-95 (96) 27 >2kgj_A Peptidyl-prolyl CIS-tr 95.1 0.035 1E-06 31.6 4.8 41 438-480 62-102 (102) 28 >1t11_A Trigger factor, TF; he 94.2 0.26 7.8E-06 25.9 7.4 136 51-227 15-158 (166) 29 >1t11_A Trigger factor, TF; he 93.0 0.22 6.4E-06 26.5 5.2 143 108-268 13-159 (166) 30 >1zxj_A MPN555, hypothetical p 91.4 0.75 2.2E-05 22.9 9.8 38 85-122 81-118 (218) 31 >2qac_A Myosin A tail domain i 66.9 6.3 0.00019 16.9 3.8 43 96-142 24-66 (67) 32 >2mys_C Myosin; muscle protein 66.3 6.5 0.00019 16.8 3.7 47 94-143 14-60 (61) 33 >1wdc_C Scallop myosin; calciu 56.9 9.5 0.00028 15.7 4.0 49 96-144 24-72 (77) 34 >1top_A Troponin C; contractIl 54.9 10 0.0003 15.5 4.6 44 98-143 7-50 (52) 35 >3d0c_A Dihydrodipicolinate sy 50.4 12 0.00036 15.1 5.7 20 124-143 22-41 (217) 36 >1w7j_B Myosin light chain 1; 43.4 15 0.00045 14.4 2.9 44 97-143 17-60 (61) 37 >2mys_B Myosin; muscle protein 43.0 16 0.00046 14.3 3.7 50 92-143 18-67 (74) 38 >2bz2_A Negative elongation fa 40.1 6.7 0.0002 16.7 -0.1 51 242-292 43-95 (121) 39 >3fia_A Intersectin-1; EH 1 do 39.4 18 0.00052 14.0 4.7 29 127-155 44-72 (121) 40 >2ovk_C Myosin catalytic light 37.4 19 0.00056 13.8 4.0 21 127-147 23-43 (159) 41 >2dgu_A Heterogeneous nuclear 35.5 8.4 0.00025 16.1 -0.2 46 247-292 22-67 (103) 42 >2cqh_A IGF-II mRNA-binding pr 34.8 11 0.00032 15.4 0.3 47 247-293 19-67 (93) 43 >1x5p_A Negative elongation fa 34.4 9.4 0.00028 15.8 -0.1 50 243-292 20-71 (97) 44 >2cq2_A Hypothetical protein L 34.3 11 0.00032 15.3 0.3 47 247-293 38-86 (114) 45 >1w26_A Trigger factor, TF; ch 34.2 21 0.00063 13.5 3.4 37 362-398 22-58 (80) 46 >1exr_A Calmodulin; high resol 34.1 21 0.00063 13.4 4.2 49 93-143 39-87 (88) 47 >2dgt_A RNA-binding protein 30 32.3 9.6 0.00029 15.7 -0.3 46 247-292 21-66 (92) 48 >2ytc_A PRE-mRNA-splicing fact 31.3 13 0.00037 14.9 0.2 47 247-293 23-71 (85) 49 >1xxx_A DHDPS, dihydrodipicoli 30.3 25 0.00073 13.0 5.8 18 126-143 26-43 (219) 50 >2jnf_A Troponin C; stretch ac 30.0 25 0.00074 13.0 2.5 44 98-143 18-61 (64) 51 >1ggw_A Protein (CDC4P); light 29.9 25 0.00074 13.0 3.0 41 99-142 29-69 (71) 52 >1eh2_A EPS15; calcium binding 29.7 25 0.00075 13.0 4.2 47 109-155 8-54 (106) 53 >2jvo_A Nucleolar protein 3; n 29.5 12 0.00035 15.1 -0.2 46 247-292 42-87 (108) 54 >1xky_A Dihydrodipicolinate sy 29.0 26 0.00077 12.9 6.2 18 126-143 24-41 (219) 55 >3fkr_A L-2-keto-3-deoxyarabon 28.5 26 0.00078 12.8 6.5 18 126-143 20-37 (309) 56 >2dnp_A RNA-binding protein 14 27.9 13 0.00039 14.8 -0.2 46 247-292 20-65 (90) 57 >1b7f_A Protein (SXL-lethal pr 26.4 17 0.00052 14.0 0.2 24 269-292 44-67 (84) 58 >1wg1_A KIAA1579 protein, homo 26.1 15 0.00044 14.4 -0.2 46 247-292 16-62 (88) 59 >3e96_A Dihydrodipicolinate sy 25.7 30 0.00088 12.5 6.0 20 124-143 22-41 (217) 60 >2cpd_A Apobec-1 stimulating p 25.4 15 0.00044 14.5 -0.3 46 247-292 26-73 (99) 61 >1wdc_C Scallop myosin; calciu 25.2 30 0.00089 12.5 3.4 42 99-143 33-74 (79) 62 >2ovk_B RLC, myosin regulatory 25.2 30 0.00089 12.5 4.4 40 109-148 9-49 (153) 63 >2wbr_A GW182, gawky, LD47780P 24.9 15 0.00046 14.3 -0.3 46 247-292 18-65 (89) 64 >1oo0_B CG8781-PA, drosophila 24.6 24 0.00072 13.1 0.7 46 247-292 37-90 (110) 65 >2cq1_A PTB-like protein L; RR 24.5 15 0.00045 14.4 -0.4 46 247-292 26-73 (101) 66 >1x5s_A Cold-inducible RNA-bin 24.3 21 0.00062 13.5 0.3 23 270-292 54-76 (102) 67 >2qfj_A FBP-interacting repres 24.0 21 0.00063 13.4 0.3 25 268-292 40-64 (80) 68 >3h2u_B Raver-1; focal adhesio 24.0 15 0.00045 14.4 -0.5 46 247-292 12-58 (72) 69 >1why_A Hypothetical protein r 23.8 18 0.00052 14.0 -0.2 46 247-292 28-75 (97) 70 >2ghp_A U4/U6 snRNA-associated 23.6 26 0.00078 12.8 0.7 24 269-292 42-65 (86) 71 >3fwb_A Cell division control 23.3 33 0.00097 12.2 4.0 44 98-143 25-68 (69) 72 >2e5j_A Methenyltetrahydrofola 23.0 22 0.00066 13.3 0.2 46 247-292 30-78 (97) 73 >1m45_A MLC1P, myosin light ch 22.7 34 0.001 12.1 3.7 45 97-143 19-63 (64) 74 >2qpt_A EH domain-containing p 22.0 35 0.001 12.1 3.6 28 128-155 38-65 (118) 75 >2cpj_A Non-POU domain-contain 21.8 19 0.00057 13.7 -0.3 46 247-292 26-73 (99) 76 >3eb2_A Putative dihydrodipico 21.4 36 0.0011 12.0 6.1 16 127-142 17-32 (245) 77 >2hg7_A Phage-like element PBS 21.3 36 0.0011 12.0 1.8 19 205-223 38-56 (110) 78 >1x4c_A Splicing factor, argin 21.3 22 0.00066 13.3 -0.1 46 247-292 26-72 (108) 79 >3cpr_A Dihydrodipicolinate sy 21.1 36 0.0011 11.9 6.0 18 126-143 28-45 (221) 80 >2dis_A Unnamed protein produc 20.9 29 0.00085 12.6 0.4 24 269-292 51-74 (109) 81 >1fxl_A Paraneoplastic encepha 20.8 24 0.0007 13.1 -0.0 46 247-292 13-66 (83) 82 >1nu4_A U1A RNA binding domain 20.4 37 0.0011 11.8 1.9 46 247-292 19-73 (97) 83 >1w7j_B Myosin light chain 1; 20.4 37 0.0011 11.8 3.9 46 99-144 32-77 (90) 84 >1wex_A Hypothetical protein ( 20.3 20 0.0006 13.6 -0.5 46 247-292 26-73 (104) 85 >2cph_A RNA binding motif prot 20.2 26 0.00078 12.8 0.1 27 270-296 58-84 (107) 86 >2g4b_A Splicing factor U2AF 6 20.1 26 0.00078 12.8 0.1 25 268-292 44-68 (82) No 1 >>2itk_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; PIN1, isomerase, WW domain; HET: D11 NAL PE4; 1.45A {Homo sapiens} (A:) Probab=99.70 E-value=4.4e-20 Score=148.61 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=129.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 67898899999765666555454433222211000000012578899987555545554332112378875300001478 Q gi|254781158|r 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285 (631) Q Consensus 206 ~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~ 285 (631) ..++.++++.++..+...+...+.+...++..+...+.....+++++++.+|+.+...|..|+.+ ..+++..+++.|++ T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~ 95 (167) T 2itk_A 17 KAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEK-ITRTKEEALELING 95 (167) T ss_dssp EEECTTTCCEEEEETTTCCEESSCCC------------CCSCEEEEEEEECCTTSSSCCCSSCSS-CCCCHHHHHHHHHH T ss_pred EEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC-CCCCHHHHHHHHHH T ss_conf 98828889578872677637766325665333454333355444332147632656774423333-20029999999999 Q ss_pred HHHHHHCCCCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC Q ss_conf 887530365147887752011----2365245316232267567776420236672256786177211211023 Q gi|254781158|r 286 AFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 (631) Q Consensus 286 ~~~~l~~g~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~ 355 (631) ++.+|++|.+|.+++..++++ .++|++||+.++.++ |+|++++|+| ++|+||+||+|++|||||||++ T Consensus 96 ~~~~l~~g~~f~~~aa~~~s~~~sa~~gG~lg~~~~~~l~-~~~~~~~~~l-~~Geis~pi~t~~G~~iikv~d 167 (167) T 2itk_A 96 YIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQ-KPFEDASFAL-RTGEMSGPVFTDSGIHIILRTE 167 (167) T ss_dssp HHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTTSSC-HHHHHHHHHS-CTTCBCCCEEETTEEEEEEECC T ss_pred HHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCC-HHHHHHHHCC-CCCCCCCCEECCCCEEEEEEEC T ss_conf 9998750212499999870778543322011135434346-9999999818-9998378788699179999949 No 2 >>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} (A:) Probab=99.69 E-value=3.3e-19 Score=142.88 Aligned_cols=129 Identities=14% Similarity=0.243 Sum_probs=106.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH Q ss_conf 9997656665554544332222110000000125788999875555455543321123788753000014----788875 Q gi|254781158|r 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA----DEAFQS 289 (631) Q Consensus 214 ~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A----~~~~~~ 289 (631) ++||+.++.++..++.+...+ .+.+.|||+||++||++|+++|..++ ++||.+++.++| +++..+ T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--------~~~i~vtd~ei~~~y~~~~~~~~~~~---~~~I~~~~~~~a~~~~~~~~~~ 71 (139) T 1j6y_A 3 SSHHHHHHSSGLVPRGSHMAS--------RDQVKASHILIKHQGSRRKASWKDPE---GKIILTTTREAAVEQLKSIRED 71 (139) T ss_dssp -----------------CCSS--------CCSCEEECCEECSCTTSSSSSCSCCC---SCCCSCCCHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCC--------CCEEEEEEEEECCCCCCCCHHCCCCC---CCCCCCCCHHHHHHHHHHHHHH T ss_conf 654433212576777655478--------01289998998157755520002432---1111202299999999999999 Q ss_pred HHC-CCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC Q ss_conf 303-65147887752011---2365245316232267567776420236672256786177211211023 Q gi|254781158|r 290 LKK-GKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 (631) Q Consensus 290 l~~-g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~ 355 (631) +++ |.+|+++|+.+|.+ ..+|..||+..+.++ ++|++++|+| ++|++|+|++++.|||||||+. T Consensus 72 ~~~~~~~F~~~a~~~s~~~~~~~~g~~~~~~~~~l~-~~~~~~~~~l-~~Geis~pi~~~~g~~Iikv~a 139 (139) T 1j6y_A 72 IVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQ-KPFEEATYAL-KVGDISDIVDTDSGVHIIKRTA 139 (139) T ss_dssp HHSSCCCCHHHHHHSSCHHHHHTCSEEEECSSSSSC-THHHHHHHHC-CSSSCCSCEEETTEEECCCSCC T ss_pred HHCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCC-HHHHHHHHHC-CCCCCCCCEEECCEEEEEEEEC T ss_conf 874842799999995841002568612046124167-8999999848-8998476579599079999939 No 3 >>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} (A:) Probab=99.65 E-value=1.4e-17 Score=132.25 Aligned_cols=98 Identities=22% Similarity=0.380 Sum_probs=89.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEE Q ss_conf 332112378875300001478887530365147887752011----2365245316232267567776420236672256 Q gi|254781158|r 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 (631) Q Consensus 265 ~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~ 340 (631) ++|++++++||+++++++|++++.+|++|.+|+++|+++|.+ .++|++||++++.+| ++|+.++| + ++|++|+ T Consensus 1 ~~p~~v~~~~I~~~~~~~A~~~~~~l~~g~~F~~lA~~~S~d~~~~~~gG~lg~~~~~~l~-~~~~~~~~-l-~~G~vs~ 77 (102) T 2kgj_A 1 TQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIP-DELKNAGL-K-EKGQLSG 77 (102) T ss_dssp CCCCEEEEEEEEESSHHHHHHHHHHHHHTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCC-HHHHTTCC-C-STTCEEE T ss_pred CCCCEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEECCCCCC-HHHHHHHH-H-CCCCCCC T ss_conf 9841687521640899999999999887999999999867896523447755235588889-79999998-2-8998343 Q ss_pred EEEECCCCHHHHHCCCCCHHHHHHH Q ss_conf 7861772112110233301344554 Q gi|254781158|r 341 VIHGSFGYVIAHVSNIKPSFTVSFQ 365 (631) Q Consensus 341 pv~t~~G~~iikv~~~~~~~~~~~~ 365 (631) |+++++||||+||.+++++..+||| T Consensus 78 pi~~~~G~~I~~v~~~~~~~~~~~E 102 (102) T 2kgj_A 78 VIKSSVGFLIVRLDDIQAAHHHHHH 102 (102) T ss_dssp EEEETTEEEEEEEEEEECSSTTSCC T ss_pred CEEECCEEEEEEEEEEECCCCCCCC T ss_conf 5797999999999368655544569 No 4 >>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} (A:) Probab=99.60 E-value=2.8e-16 Score=123.72 Aligned_cols=88 Identities=22% Similarity=0.301 Sum_probs=81.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEE Q ss_conf 112378875300001478887530365147887752011---23652453162322675677764202366722567861 Q gi|254781158|r 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 (631) Q Consensus 268 e~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t 344 (631) ++++++||++++++.|++++.+|++|.+|+++|+.+|.+ ..+|++||+..+.+| ++|.+++|+| ++|++|+||++ T Consensus 2 ~~v~~~~I~~~~~~~A~~i~~~l~~g~~F~~la~~yS~~~~~~~~G~lg~~~~~~l~-~~~~~~~~~l-~~geis~pi~~ 79 (92) T 1jns_A 2 KTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVFSC-PVLEPTGPLHT 79 (92) T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSC-HHHHHHHHHS-CTTCCEEEEEE T ss_pred CEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCC-HHHHHHHHHC-CCCCCCCCEEE T ss_conf 745799987689999999999988799899999984899642468803146222035-8999999848-99996776780 Q ss_pred CCCCHHHHHCCCC Q ss_conf 7721121102333 Q gi|254781158|r 345 SFGYVIAHVSNIK 357 (631) Q Consensus 345 ~~G~~iikv~~~~ 357 (631) +.||||+||.+++ T Consensus 80 ~~g~~Iikv~~~r 92 (92) T 1jns_A 80 QFGYHIIKVLYRN 92 (92) T ss_dssp TTEEEEEEEECCC T ss_pred CCEEEEEEEEECC T ss_conf 9848999997369 No 5 >>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444} (A:) Probab=99.60 E-value=3.2e-16 Score=123.33 Aligned_cols=96 Identities=17% Similarity=0.243 Sum_probs=84.9 Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCC Q ss_conf 33211237887530--------0001478887530365147887752011---236524531623226756777642023 Q gi|254781158|r 265 FSPEIRTVEQLVFP--------NQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLA 333 (631) Q Consensus 265 ~~pe~~~~~~i~~~--------~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~ 333 (631) ..|+++.++||+++ .++.|++++.+|++|++|+++|+++|.+ ..+|++||+..+.|+ ++|.+++|+| T Consensus 3 ~~p~~v~~~~I~i~~~~~~~~~~~~~a~~i~~~l~~g~~F~~lA~~yS~~~~~~~~g~~g~~~~~~l~-~~~~~~~~~l- 80 (112) T 3gpk_A 3 LGTEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLP-TELATTAASX- 80 (112) T ss_dssp --CCEEEEEEEEEECCGGGHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHHHHHHC- T ss_pred CCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHC- T ss_conf 88637879999981894257999999999999998699989999985635332333210000344104-6999999818- Q ss_pred CCCCEEEEEEECCCCHHHHHCCCCCHHHH Q ss_conf 66722567861772112110233301344 Q gi|254781158|r 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362 (631) Q Consensus 334 ~~G~is~pv~t~~G~~iikv~~~~~~~~~ 362 (631) ++|+||+||++++||||+||.+++++.++ T Consensus 81 ~~Gevs~pi~~~~G~~Iikv~~~~~~~~~ 109 (112) T 3gpk_A 81 GPGQLAGPVEIRGGFSILYLIDKREGHHH 109 (112) T ss_dssp CTTCEEEEEEETTEEEEEEEEEEECCSCG T ss_pred CCCCCCCCEEECCEEEEEEEEEEECCCCC T ss_conf 99981865898999999999648767367 No 6 >>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} (A:) Probab=99.58 E-value=2.3e-16 Score=124.31 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=81.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEE Q ss_conf 32112378875300001478887530365147887752011----23652453162322675677764202366722567 Q gi|254781158|r 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341 (631) Q Consensus 266 ~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~p 341 (631) .|++++++||+|++++.|++++.+|++|++|+++|+.+|.+ ..+|++||+..+.+| |+|++++|++ ++|++|+| T Consensus 1 gp~~v~~~~I~~~~~~~A~~~~~~l~~g~~F~~lA~~yS~d~~~~~~gg~~g~~~~~~l~-~~~~~~~~~l-~~G~vs~p 78 (93) T 1zk6_A 1 GSGKIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMD-ETFSKAAFKL-KTGEVSDP 78 (93) T ss_dssp --CCEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSC-TTHHHHHHHS-CTTCBCCC T ss_pred CCCEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCC-HHHHHHHHCC-CCCCCCCC T ss_conf 997289999998898999999999986999999997734387434586222110278344-6899998518-99983776 Q ss_pred EEECCCCHHHHHCCC Q ss_conf 861772112110233 Q gi|254781158|r 342 IHGSFGYVIAHVSNI 356 (631) Q Consensus 342 v~t~~G~~iikv~~~ 356 (631) +++++||||++|.++ T Consensus 79 i~~~~g~~Ii~v~~r 93 (93) T 1zk6_A 79 VKTQYGYHIIKKTEE 93 (93) T ss_dssp EECSSCEEEEEEEEC T ss_pred EEECCEEEEEEEECC T ss_conf 896998999999478 No 7 >>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:149-258) Probab=99.56 E-value=9.8e-16 Score=120.21 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=74.7 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHH Q ss_conf 300001478887530365147887752011---23652453162322675677764202366722567861772112110 Q gi|254781158|r 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 (631) Q Consensus 277 ~~~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv 353 (631) .++++.|++++.+|++|.+|++||+++|.+ ..+|++||+..+.+| ++|.+++|+| ++|+||+||+++.||||+|| T Consensus 25 ~~~~~~A~~i~~~l~~g~~F~~la~~ys~d~~~~~~g~~g~~~~~~l~-~~~~~~~~~L-~~GevS~pi~~~~g~~Iikl 102 (110) T 1m5y_A 25 NEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP-GIFAQALSTA-KKGDIVGPIRSGVGFHILKV 102 (110) T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHTGGGTC-CTTCEEEEEEETTEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHC-HHHHHHHHHH-CCCCCCCCCCCCCHHHHHHH T ss_conf 889888888999874012689998870347265516742100044301-0567777762-35764562015535899999 Q ss_pred CCCCCHH Q ss_conf 2333013 Q gi|254781158|r 354 SNIKPSF 360 (631) Q Consensus 354 ~~~~~~~ 360 (631) .+++++. T Consensus 103 ~~~~~~~ 109 (110) T 1m5y_A 103 NDLRGES 109 (110) T ss_dssp EEECCCC T ss_pred HHHHHHC T ss_conf 9876010 No 8 >>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} (A:) Probab=99.56 E-value=5.8e-16 Score=121.68 Aligned_cols=75 Identities=27% Similarity=0.453 Sum_probs=68.0 Q ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHH Q ss_conf 000147888753036-5147887752011----23652453162322675677764202366722567861772112110 Q gi|254781158|r 279 NQKEADEAFQSLKKG-KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353 (631) Q Consensus 279 ~~~~A~~~~~~l~~g-~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv 353 (631) +++.|++++.+|++| .+|+++|+++|.+ .+||++||+.++.++ ++|++++|+| ++|+||+||+|++||||+|| T Consensus 32 a~~~a~~~~~~i~~g~~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~~~-~~~~~a~~~L-~~Geis~pi~t~~G~hIikv 109 (111) T 2jzv_A 32 AKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTD-KDFEKALFKL-KDGEVSEVVKSSFGYHIIKA 109 (111) T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSC-HHHHHHHHTC-CTTCBCCCEEETTEEEEEEE T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHC-CCCCCCCCEEECCEEEEEEE T ss_conf 999999999999829523999999978694101348645776766326-9999999848-99982887885998899998 Q ss_pred CC Q ss_conf 23 Q gi|254781158|r 354 SN 355 (631) Q Consensus 354 ~~ 355 (631) ++ T Consensus 110 ~e 111 (111) T 2jzv_A 110 DK 111 (111) T ss_dssp CC T ss_pred EC T ss_conf 49 No 9 >>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo sapiens} (A:) Probab=99.55 E-value=6.5e-16 Score=121.38 Aligned_cols=87 Identities=22% Similarity=0.366 Sum_probs=79.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC--CCCCCCCCHHHCCCHHHHHHHHCCCCCCCEE------E Q ss_conf 1237887530000147888753036514788775201123--6524531623226756777642023667225------6 Q gi|254781158|r 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEYIPDVSLADSIFSLAKKGDFT------P 340 (631) Q Consensus 269 ~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~~~--~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is------~ 340 (631) +++++||+++++++|++++.+|++|++|+++|+++|.+.. .+.+||+.++.++ ++|.+++|+| ++|++| + T Consensus 2 sv~v~hI~~~~~~~A~~i~~~l~~G~~F~~lA~~~S~d~~~~~gg~g~~~~~~l~-~~~~~~~~~l-~~g~vS~~~~~~~ 79 (96) T 1eq3_A 2 AVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMV-GPFQEAAFAL-PVSGMDKPVFTDP 79 (96) T ss_dssp CEEEEEEEECCCSTHHHHHHHHTTTTSHHHHHHHHCCCTTTCCSEEEEESSCCSS-SHHHHHHHHC-CSCCSSTTTBCSS T ss_pred CEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHCCCCCCEECCCCCC-HHHHHHHHHC-CCCCCCCCCCCCC T ss_conf 4799999977899999999998879999999998575404318974406755256-7999999847-8875246666689 Q ss_pred EEEECCCCHHHHHCCCC Q ss_conf 78617721121102333 Q gi|254781158|r 341 VIHGSFGYVIAHVSNIK 357 (631) Q Consensus 341 pv~t~~G~~iikv~~~~ 357 (631) |+++++||||++|.+++ T Consensus 80 pv~s~~G~hIikv~~~r 96 (96) T 1eq3_A 80 PVKTKFGYHIIMVEGRK 96 (96) T ss_dssp CEEETTEEEEEEEEECC T ss_pred CEEECCEEEEEEEEEEC T ss_conf 76708878999996689 No 10 >>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} (A:62-177) Probab=99.54 E-value=5e-16 Score=122.10 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=81.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHC---CCCCCCCCCCCHHHCCCHHHHHHHHCCC Q ss_conf 55455543321123788753000014788875303651-4788775201---1236524531623226756777642023 Q gi|254781158|r 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-FIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLA 333 (631) Q Consensus 258 ~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~-F~~la~~~~~---~~~~~~lg~~~~~~~~~~~~~~a~f~l~ 333 (631) ..+...+..++.....++..++++.|++++++|.+|++ |+.+|+.+|. ..++|++||+.++.|+ ++|.+++|+| T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~g~~~f~~~a~~~sd~~s~~~gG~lg~~~~~~l~-~~~~~~~~~l- 94 (116) T 1yw5_A 17 NQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQ-PPFEEAAFNL- 94 (116) T ss_dssp TTSSSCCBTTBTTCCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEEECTTSSC-HHHHHHHHTS- T ss_pred CCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHCC-HHHHHHHHCC- T ss_conf 77778410013554434699999999999999864734089998871755512446532223343358-9999999828- Q ss_pred CCCCEEEEEEECCCCHHHHHCC Q ss_conf 6672256786177211211023 Q gi|254781158|r 334 KKGDFTPVIHGSFGYVIAHVSN 355 (631) Q Consensus 334 ~~G~is~pv~t~~G~~iikv~~ 355 (631) ++|+||+||+|++|||||||+. T Consensus 95 ~~Geis~pi~t~~GyhIikv~g 116 (116) T 1yw5_A 95 HVGEVSNIIETNSGVHILQRTG 116 (116) T ss_dssp CTTCBCCCEEETTEEEEEEECC T ss_pred CCCCCCCCEEECCEEEEEEEEC T ss_conf 9898577578289089999849 No 11 >>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} (A:) Probab=99.54 E-value=6.4e-15 Score=114.85 Aligned_cols=89 Identities=20% Similarity=0.281 Sum_probs=78.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEE Q ss_conf 2112378875300001478887530365147887752011---2365245316232267567776420236672256786 Q gi|254781158|r 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343 (631) Q Consensus 267 pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~ 343 (631) ++.+...++..++++.|++++.+|++|++|+++|+++|.+ .++|++||+..+.+| ++|.+++|+| ++|++|+|++ T Consensus 12 ~~~~~~~~~~~~~~~~a~~i~~~l~~g~~F~~la~~~S~d~~~~~~g~~g~~~~~~l~-~~~~~~i~~l-~~G~vs~pi~ 89 (103) T 2pv1_A 12 LPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP-GIFAQALSTA-KKGDIVGPIR 89 (103) T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHHHTTTC-CTTCEEEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHC-CCCCCCCCEE T ss_conf 8989998999999999999999988699989996443136653322321213322353-2566666326-8998887489 Q ss_pred ECCCCHHHHHCCCC Q ss_conf 17721121102333 Q gi|254781158|r 344 GSFGYVIAHVSNIK 357 (631) Q Consensus 344 t~~G~~iikv~~~~ 357 (631) +++||||+||++++ T Consensus 90 ~~~g~~Iikv~~rr 103 (103) T 2pv1_A 90 SGVGFHILKVNDLR 103 (103) T ss_dssp ETTEEEEEEEEEEC T ss_pred ECCEEEEEEEEEEC T ss_conf 89999999996679 No 12 >>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:259-369) Probab=99.53 E-value=1.9e-15 Score=118.37 Aligned_cols=94 Identities=17% Similarity=0.289 Sum_probs=80.3 Q ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHCC-CCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHC Q ss_conf 32112378875300---------00147888753036-5147887752011----2365245316232267567776420 Q gi|254781158|r 266 SPEIRTVEQLVFPN---------QKEADEAFQSLKKG-KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFS 331 (631) Q Consensus 266 ~pe~~~~~~i~~~~---------~~~A~~~~~~l~~g-~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~ 331 (631) .|++++++||+++. ++.|++++.+|++| .+|+++|+++|.+ ..+|++||+..+.+| ++|.+++|+ T Consensus 3 ~~~~~~~~~Ili~~~~~~~~~~a~~~a~~~~~~l~~g~~~F~~lA~~~S~d~~s~~~~g~lg~~~~~~l~-~~~~~~~~~ 81 (111) T 1m5y_A 3 SVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFD-PAFRDALTR 81 (111) T ss_dssp CCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSC-HHHHHHHHT T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHC T ss_conf 3036788876511320023379999999999988606344999998728996520126756777745378-899999980 Q ss_pred CCCCCCEEEEEEECCCCHHHHHCCCCCHHH Q ss_conf 236672256786177211211023330134 Q gi|254781158|r 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361 (631) Q Consensus 332 l~~~G~is~pv~t~~G~~iikv~~~~~~~~ 361 (631) | ++|+||+|++++.||||+||.+++++.. T Consensus 82 l-~~Gevs~pi~~~~G~~Iikv~~~~~~~~ 110 (111) T 1m5y_A 82 L-NKGQMSAPVHSSFGWHLIELLDTRNVDK 110 (111) T ss_dssp C-CTTCBCCCEECSSCEEEEEEEEEEECC- T ss_pred C-CCCCCCCCEECCCEEEEEEEEEEECCCC T ss_conf 8-9999087477488389999987506888 No 13 >>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:1-70,A:401-408) Probab=98.78 E-value=4.4e-08 Score=70.17 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=56.2 Q ss_pred CCCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 884289999878489999999999999999870889997899860138999999999999999999849824 Q gi|254781158|r 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110 (631) Q Consensus 39 ~~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~v 110 (631) -+.+||+|||++||.+||++++......+.++.+...+.. .++.++|++||++.|+.|+|+++||.. T Consensus 5 ~d~IvAvVNge~It~sel~~~~~~~~~~~~~~~~~~~~~~-----~lr~qvLd~LI~~~Ll~Q~A~k~gI~~ 71 (78) T 1m5y_A 5 VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDA-----TLRHQIMERLIMDQIILQMGQKMGVKA 71 (78) T ss_dssp CCCEEEEESSSEEEHHHHHHHHHHHHHHHHTTTCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHTTCCS T ss_pred CCEEEEEECCEEECHHHHHHHHHHHHHHHHHCCCCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 4638999999973899999999999998763356898459-----999999999999999999999849998 No 14 >>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima} (A:) Probab=98.09 E-value=0.0003 Score=45.10 Aligned_cols=118 Identities=10% Similarity=0.103 Sum_probs=82.9 Q ss_pred ECCHHHHHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 84899999999999999998708------899978998601389999999999999999998498248899999996347 Q gi|254781158|r 50 KVPFSSFINSWKQELGMISQKIG------FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 (631) Q Consensus 50 ~I~~~~f~~~~~~~~~~~~~~~g------~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p 123 (631) +|+.+-+...++..+..+.++++ ...+.++. ...++.++.+++....++.+.|++.||.||+++|...|..+ T Consensus 44 ~iP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~~~a~~~lk~~lil~~ia~~e~I~Vs~eei~~~i~~~- 121 (170) T 2nsa_A 44 EISDRTLEILVNEAINRLKREGRYEQIVSSYESEEKF-REELKERILDDIKRDRVIEVLAQEKGISVNDEELEKEAEEL- 121 (170) T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCHHHHHHTSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH- T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH- T ss_conf 9988999999999999999987645555442468988-88899999999999999999998857889999999999999- Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 65542102398999999986110056776788877544455543014542200 Q gi|254781158|r 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176 (631) Q Consensus 124 ~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 176 (631) .....++.+.|...+..+|.+.+.+ +..+...++.+.+...+.++. T Consensus 122 ---a~~~~~~~~~~~~~~~~~~~~~~~l----~~~i~~~kv~~~l~~~a~v~e 167 (170) T 2nsa_A 122 ---APFWGISPDRAKSLVKARQDLREEL----RWAILKRKVLDLLLQEVEHHH 167 (170) T ss_dssp ---HHHHTSCHHHHHHHHHHCHHHHHHH----HHHHHHHHHHHHHHTTCCCBC T ss_pred ---HHHCCCCHHHHHHHHHHCHHHHHHH----HHHHHHHHHHHHHHHHHHHHC T ss_conf ---9886999999999998588999999----999999999999999743112 No 15 >>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:71-132,A:370-400) Probab=97.24 E-value=0.0011 Score=41.43 Aligned_cols=72 Identities=25% Similarity=0.264 Sum_probs=57.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHH Q ss_conf 4889999999634765542102398999999986110056776788877544455543014-542200222334554 Q gi|254781158|r 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRF 185 (631) Q Consensus 110 vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~ 185 (631) |||++|...|.++ -...+.+.+.|.+.|...|++.+.|.+.+|.++..+++++.... .+.+.....+..|+. T Consensus 1 VsD~EVD~aI~~I----AqqN~lT~eql~~~L~~qGis~e~fR~qIR~eIl~~rL~q~~V~skI~V~~~~~~~~~~~ 73 (93) T 1m5y_A 1 ISDEQLDQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITIDAAQKDRAYRM 73 (93) T ss_dssp CCHHHHHHHHHHH----HHHTTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC------HHHHH T ss_pred CCHHHHHHHHHHH----HHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 6999999999999----987052479999999974998788888889999999987430000013446579999999 No 16 >>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} (A:) Probab=97.23 E-value=0.0021 Score=39.67 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=54.4 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC Q ss_conf 99999999999983699978989863981440256222655423579899999861688872034516995699999705 Q gi|254781158|r 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 (631) Q Consensus 499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~ 578 (631) .+.+|+++...+ +.|.+|+++++.++..-....+-.........+++++...+|.++.|+++ .|...+.+|.|++|++ T Consensus 24 ~~~~a~~i~~~l-~~g~~F~~la~~~S~d~~~~~~g~~g~~~~~~l~~~~~~~i~~l~~G~vs-~pi~~~~g~~Iikv~~ 101 (103) T 2pv1_A 24 AESQARAIVDQA-RNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIV-GPIRSGVGFHILKVND 101 (103) T ss_dssp HHHHHHHHHHHH-HTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHTTTCCTTCEE-EEEEETTEEEEEEEEE T ss_pred HHHHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEEE T ss_conf 999999999998-86999899964431366533223212133223532566666326899888-7489899999999966 Q ss_pred C Q ss_conf 8 Q gi|254781158|r 579 S 579 (631) Q Consensus 579 ~ 579 (631) + T Consensus 102 r 102 (103) T 2pv1_A 102 L 102 (103) T ss_dssp E T ss_pred E T ss_conf 7 No 17 >>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:149-258) Probab=97.21 E-value=0.002 Score=39.78 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=55.1 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC Q ss_conf 99999999999983699978989863981440256222655423579899999861688872034516995699999705 Q gi|254781158|r 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 (631) Q Consensus 499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~ 578 (631) .+..|.++..++ ++|.+|+++++.++..-.....-.........+++++...+|+++.|+++ .|...+.+|.|++|.+ T Consensus 27 ~~~~A~~i~~~l-~~g~~F~~la~~ys~d~~~~~~g~~g~~~~~~l~~~~~~~~~~L~~GevS-~pi~~~~g~~Iikl~~ 104 (110) T 1m5y_A 27 AESQARAIVDQA-RNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIV-GPIRSGVGFHILKVND 104 (110) T ss_dssp HHHHHHHHHHHH-HTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHTGGGTCCTTCEE-EEEEETTEEEEEEEEE T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHCHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHH T ss_conf 988888899987-40126899988703472655167421000443010567777762357645-6201553589999998 Q ss_pred CCCC Q ss_conf 8788 Q gi|254781158|r 579 SKVG 582 (631) Q Consensus 579 ~~~~ 582 (631) ..++ T Consensus 105 ~~~~ 108 (110) T 1m5y_A 105 LRGE 108 (110) T ss_dssp ECCC T ss_pred HHHH T ss_conf 7601 No 18 >>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444} (A:) Probab=97.19 E-value=0.0019 Score=39.85 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=55.8 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC Q ss_conf 99999999999983699978989863981440256222655423579899999861688872034516995699999705 Q gi|254781158|r 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 (631) Q Consensus 499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~ 578 (631) .+..|+++...+ +.|.+|+++|+.++..-...............+++++...+|++++|+++ .|...+.+|.|++|.+ T Consensus 25 ~~~~a~~i~~~l-~~g~~F~~lA~~yS~~~~~~~~g~~g~~~~~~l~~~~~~~~~~l~~Gevs-~pi~~~~G~~Iikv~~ 102 (112) T 3gpk_A 25 VFANAEKIVEQL-KQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASXGPGQLA-GPVEIRGGFSILYLID 102 (112) T ss_dssp HHHHHHHHHHHH-HTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHHHHCCTTCEE-EEEEETTEEEEEEEEE T ss_pred HHHHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEEE T ss_conf 999999999999-86999899999856353323332100003441046999999818999818-6589899999999964 Q ss_pred CCCCC Q ss_conf 87889 Q gi|254781158|r 579 SKVGP 583 (631) Q Consensus 579 ~~~~~ 583 (631) ..+.. T Consensus 103 ~~~~~ 107 (112) T 3gpk_A 103 KREGH 107 (112) T ss_dssp EECCS T ss_pred EECCC T ss_conf 87673 No 19 >>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} (A:259-369) Probab=96.93 E-value=0.0045 Score=37.44 Aligned_cols=82 Identities=7% Similarity=0.109 Sum_probs=52.7 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEC---CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEE Q ss_conf 999999999999836999789898639814402---56222655423579899999861688872034516995699999 Q gi|254781158|r 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT---NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575 (631) Q Consensus 499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~---~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~ 575 (631) ++.++.++...+.+++.+|+.+|+.++....+. +.+.+ .....+++++...+|.+++|+++ .|...+.+|.|++ T Consensus 25 a~~~a~~~~~~l~~g~~~F~~lA~~~S~d~~s~~~~g~lg~--~~~~~l~~~~~~~~~~l~~Gevs-~pi~~~~G~~Iik 101 (111) T 1m5y_A 25 ARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGW--ATPDIFDPAFRDALTRLNKGQMS-APVHSSFGWHLIE 101 (111) T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEE--ECGGGSCHHHHHHHHTCCTTCBC-CCEECSSCEEEEE T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHCCCCCCCC-CCEECCCEEEEEE T ss_conf 99999999998860634499999872899652012675677--77453788999999808999908-7477488389999 Q ss_pred ECCCCCCC Q ss_conf 70587889 Q gi|254781158|r 576 VTNSKVGP 583 (631) Q Consensus 576 v~~~~~~~ 583 (631) |.+..+.. T Consensus 102 v~~~~~~~ 109 (111) T 1m5y_A 102 LLDTRNVD 109 (111) T ss_dssp EEEEEECC T ss_pred EEEEECCC T ss_conf 98750688 No 20 >>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} (A:) Probab=96.87 E-value=0.004 Score=37.78 Aligned_cols=78 Identities=19% Similarity=0.131 Sum_probs=52.8 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECCC Q ss_conf 99999999999836999789898639814402562226554235798999998616888720345169956999997058 Q gi|254781158|r 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 (631) Q Consensus 500 ~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~~ 579 (631) ++.|+++...+ +.|.+|+++|+.++..-.....-.........+++++...+|++++|+++ .|...+.+|.|++|.++ T Consensus 14 ~~~A~~i~~~l-~~g~~F~~la~~yS~~~~~~~~G~lg~~~~~~l~~~~~~~~~~l~~geis-~pi~~~~g~~Iikv~~~ 91 (92) T 1jns_A 14 EKLALDLLEQI-KNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPT-GPLHTQFGYHIIKVLYR 91 (92) T ss_dssp HHHHHHHHHHH-HHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCE-EEEEETTEEEEEEEECC T ss_pred HHHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEEEC T ss_conf 99999999998-87998999999848996424688031462220358999999848999967-76780984899999736 No 21 >>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} (A:) Probab=96.60 E-value=0.01 Score=35.17 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=50.1 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEE---CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEE Q ss_conf 99999999999983699978989863981440---256222655423579899999861688872034516995699999 Q gi|254781158|r 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLT---TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575 (631) Q Consensus 499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~---~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~ 575 (631) ++..+.++...+.+++.+|.++|+.+.....+ .+.+.+. ..+.+++++-..+|++++|+++ .|.....+|.|++ T Consensus 32 a~~~a~~~~~~i~~g~~~F~~lA~~yS~d~~s~~~gG~lg~~--~~~~~~~~~~~a~~~L~~Geis-~pi~t~~G~hIik 108 (111) T 2jzv_A 32 AKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYV--LKGQTDKDFEKALFKLKDGEVS-EVVKSSFGYHIIK 108 (111) T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEE--ETTSSCHHHHHHHHTCCTTCBC-CCEEETTEEEEEE T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCCC-CCEEECCEEEEEE T ss_conf 999999999999829523999999978694101348645776--7663269999999848999828-8788599889999 Q ss_pred ECC Q ss_conf 705 Q gi|254781158|r 576 VTN 578 (631) Q Consensus 576 v~~ 578 (631) |++ T Consensus 109 v~e 111 (111) T 2jzv_A 109 ADK 111 (111) T ss_dssp ECC T ss_pred EEC T ss_conf 849 No 22 >>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} (A:) Probab=96.40 E-value=0.0044 Score=37.54 Aligned_cols=76 Identities=7% Similarity=-0.018 Sum_probs=50.1 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEC Q ss_conf 99999999998369997898986398144025622265542357989999986168887203451699569999970 Q gi|254781158|r 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 (631) Q Consensus 501 ~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~ 577 (631) ..+.++...+...|.+|+++++.+........+..........+++++...+|++++|+++ .|...+.+|.|++|+ T Consensus 63 ~~~~~~~~~~~~~~~~F~~~a~~~s~~~~~~~~g~~~~~~~~~l~~~~~~~~~~l~~Geis-~pi~~~~g~~Iikv~ 138 (139) T 1j6y_A 63 EQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDIS-DIVDTDSGVHIIKRT 138 (139) T ss_dssp HHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEECSSSSSCTHHHHHHHHCCSSSCC-SCEEETTEEECCCSC T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEE T ss_conf 9999999998748427999999958410025686120461241678999999848899847-657959907999993 No 23 >>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} (A:62-177) Probab=96.21 E-value=0.034 Score=31.72 Aligned_cols=78 Identities=8% Similarity=-0.115 Sum_probs=45.8 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEC Q ss_conf 9999999999998369997898986398144025622265542357989999986168887203451699569999970 Q gi|254781158|r 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 (631) Q Consensus 499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~ 577 (631) .+++|+++...+......++.+++...........-.......+.+++++-..+|++++|+++ .|...+.+|.|++|+ T Consensus 38 ~~~~a~~~~~~l~~g~~~f~~~a~~~sd~~s~~~gG~lg~~~~~~l~~~~~~~~~~l~~Geis-~pi~t~~GyhIikv~ 115 (116) T 1yw5_A 38 SIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVS-NIIETNSGVHILQRT 115 (116) T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEEECTTSSCHHHHHHHHTSCTTCBC-CCEEETTEEEEEEEC T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCHHHHHHHHCCCCCCCC-CCEEECCEEEEEEEE T ss_conf 999999999998647340899988717555124465322233433589999999828989857-757828908999984 No 24 >>2itk_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; PIN1, isomerase, WW domain; HET: D11 NAL PE4; 1.45A {Homo sapiens} (A:) Probab=96.18 E-value=0.034 Score=31.68 Aligned_cols=78 Identities=6% Similarity=-0.034 Sum_probs=40.4 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC Q ss_conf 9999999999983699978989863981440256222655423579899999861688872034516995699999705 Q gi|254781158|r 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 (631) Q Consensus 500 ~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~ 578 (631) .++|++++.++...+..++.+++...................+.+++++-..+|++++|+++ .|...+.+|.|++|++ T Consensus 90 ~~~a~~~~~~l~~g~~f~~~aa~~~s~~~sa~~gG~lg~~~~~~l~~~~~~~~~~l~~Geis-~pi~t~~G~~iikv~d 167 (167) T 2itk_A 90 LELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMS-GPVFTDSGIHIILRTE 167 (167) T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTTSSCHHHHHHHHHSCTTCBC-CCEEETTEEEEEEECC T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCCCCC-CCEECCCCEEEEEEEC T ss_conf 99999999987502124999998707785433220111354343469999999818999837-8788699179999949 No 25 >>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} (A:) Probab=96.03 E-value=0.02 Score=33.17 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=45.7 Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCC-CCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC Q ss_conf 9999999999836999789898639814402562-22655423579899999861688872034516995699999705 Q gi|254781158|r 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI-NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 (631) Q Consensus 501 ~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i-~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~ 578 (631) +.|+++..++ ++|.+|+++|+.++........- .........+++++...+|++++|+++ .|...+.+|.|++|.+ T Consensus 16 ~~A~~~~~~l-~~g~~F~~lA~~yS~d~~~~~~gg~~g~~~~~~l~~~~~~~~~~l~~G~vs-~pi~~~~g~~Ii~v~~ 92 (93) T 1zk6_A 16 KTAEEVEKKL-KKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVS-DPVKTQYGYHIIKKTE 92 (93) T ss_dssp HHHHHHHHHH-HHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHSCTTCBC-CCEECSSCEEEEEEEE T ss_pred HHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCC-CCEEECCEEEEEEEEC T ss_conf 9999999999-869999999977343874345862221102783446899998518999837-7689699899999947 No 26 >>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo sapiens} (A:) Probab=95.63 E-value=0.014 Score=34.19 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=50.8 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCEEECCC-CCCCCCCCCCCCHHHHHHHHCCCCCCCEE-----EECCCCCEEEEEE Q ss_conf 99999999983699978989863981440256-22265542357989999986168887203-----4516995699999 Q gi|254781158|r 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-INRMDNENKFFGYDGISQVFSGPVEMVKC-----FPIENGLSYVVFK 575 (631) Q Consensus 502 ~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~-i~r~~~~~~~~~~~~~~~iF~~~~g~~~~-----~~~~~~~~~~v~~ 575 (631) +|++++.++ +.|.+|+++|+.++........ ..+. ....+++++...+|+++.|+++. .|...+.+|.|++ T Consensus 15 ~A~~i~~~l-~~G~~F~~lA~~~S~d~~~~~gg~g~~--~~~~l~~~~~~~~~~l~~g~vS~~~~~~~pv~s~~G~hIik 91 (96) T 1eq3_A 15 KIMEAMEKL-KSGMRFNEVAAQYSEDKARQGGDLGWM--TRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIM 91 (96) T ss_dssp THHHHHHHH-TTTTSHHHHHHHHCCCTTTCCSEEEEE--SSCCSSSHHHHHHHHCCSCCSSTTTBCSSCEEETTEEEEEE T ss_pred HHHHHHHHH-HCCCCHHHHHHHHCCCHHHCCCCCCEE--CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCEEEEEE T ss_conf 999999998-879999999998575404318974406--75525679999998478875246666689767088789999 Q ss_pred ECCC Q ss_conf 7058 Q gi|254781158|r 576 VTNS 579 (631) Q Consensus 576 v~~~ 579 (631) |.++ T Consensus 92 v~~~ 95 (96) T 1eq3_A 92 VEGR 95 (96) T ss_dssp EEEC T ss_pred EEEE T ss_conf 9668 No 27 >>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} (A:) Probab=95.13 E-value=0.035 Score=31.60 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=20.8 Q ss_pred HHHHHHHHCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCHH Q ss_conf 8888753112346776511136974999998023223346678 Q gi|254781158|r 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 (631) Q Consensus 438 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 480 (631) ..+..++....+ +.+.++..++| |.++++.++.+...++|| T Consensus 62 ~~~~~~~~l~~G-~vs~pi~~~~G-~~I~~v~~~~~~~~~~~E 102 (102) T 2kgj_A 62 DELKNAGLKEKG-QLSGVIKSSVG-FLIVRLDDIQAAHHHHHH 102 (102) T ss_dssp HHHHTTCCCSTT-CEEEEEEETTE-EEEEEEEEEECSSTTSCC T ss_pred HHHHHHHHHCCC-CCCCCEEECCE-EEEEEEEEEECCCCCCCC T ss_conf 799999982899-83435797999-999999368655544569 No 28 >>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:121-151,A:258-392) Probab=94.24 E-value=0.26 Score=25.92 Aligned_cols=136 Identities=11% Similarity=0.152 Sum_probs=66.6 Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH Q ss_conf 489999999999999999870889997899860138999-------9999999999999998498248899999996347 Q gi|254781158|r 51 VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI-------LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123 (631) Q Consensus 51 I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qv-------l~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p 123 (631) ++-.+...++... +-+++.+..+..-+.....++.+. ..+.....++.+.++...+.++...|...+... T Consensus 15 ~~~~~~~~~~~~~--~~~~~~~~~~~TleeLk~~ire~le~~~~~~~~~~~~~~ild~L~e~~~~dlPeslv~~e~~~l- 91 (166) T 1t11_A 15 VTDADVAEMLETL--RKQQRFGVAEGGVDALKAEVRKNMERELKQAIKARIKEQAIEGLVKENEIQVPSALIDQEINVL- 91 (166) T ss_dssp --CTHHHHHHHHH--HHHHGGSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTBCSCCCEEECHHHHHHHHHHH- T ss_pred CCHHHHHHHHHHH--HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH- T ss_conf 3207899999998--7652708754557899999999999999999998888789999997436679807899999999- Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 65542102398999999986110056-77678887754445554301454220022233455432111233321000012 Q gi|254781158|r 124 LFHGKDNKFSHDVFVSRLAREGINEK-EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202 (631) Q Consensus 124 ~Fq~~~G~Fd~~~~~~~L~~~g~t~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~ 202 (631) ...|...+.+.|++.+ .|.+.++......-....+.. .+. - T Consensus 92 ----------~~~~~~~l~~~g~~~ee~~~ee~~~~Aek~vK~~lil~----------~IA------------------~ 133 (166) T 1t11_A 92 ----------RQQAAQRFGGNVEAAAQLPRELFEEQAKRRVVVGLLLG----------EVI------------------R 133 (166) T ss_dssp ----------HHHHHHHSSCSHHHHTTSCGGGTHHHHHHHHHHHHHHH----------HHH------------------H T ss_pred ----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH------------------H T ss_conf ----------99999882778344446678899999999999999999----------999------------------9 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 3456789889999976566655545 Q gi|254781158|r 203 PAIADPSNAVLTQWFEKYKDNYRAP 227 (631) Q Consensus 203 ~~~~~~td~el~~yy~~nk~~f~~p 227 (631) ...+.||+++|..++..--..|..+ T Consensus 134 ~e~I~vseeEi~~~i~~~A~~yg~~ 158 (166) T 1t11_A 134 THELKADEEKVKALITEMATAYEDP 158 (166) T ss_dssp HTTCCCCHHHHHHHHHHHHHCC--- T ss_pred HHCCCCCHHHHHHHHHHHHHHCCCH T ss_conf 9789889999999999999846998 No 29 >>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:121-151,A:258-392) Probab=92.96 E-value=0.22 Score=26.48 Aligned_cols=143 Identities=10% Similarity=0.103 Sum_probs=62.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHH Q ss_conf 8248899999996347655421023-98999999986110056776788877544455543014--54220022233455 Q gi|254781158|r 108 LEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKR 184 (631) Q Consensus 108 i~vsd~~v~~~i~~~p~Fq~~~G~F-d~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~--~~~~~~~~~~~~~~ 184 (631) -.|+|..|..++....--|...+.| +-+.|+..++..-- .++.... .....++++..+.. .+-+|+..++..+. T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~TleeLk~~ire~le--~~~~~~~-~~~~~~~ild~L~e~~~~dlPeslv~~e~~ 89 (166) T 1t11_A 13 AEVTDADVAEMLETLRKQQRFGVAEGGVDALKAEVRKNME--RELKQAI-KARIKEQAIEGLVKENEIQVPSALIDQEIN 89 (166) T ss_dssp C---CTHHHHHHHHHHHHHGGSTTTTHHHHHHHHHHHHHH--HHHHHHH-HHHHHTTTCTTBCSCCCEEECHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 3432078999999987652708754557899999999999--9999999-988887899999974366798078999999 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 43211123332100001234567898899999765666555454433222-21100000001257889998755554555 Q gi|254781158|r 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY-ILFDVHEKEKKIEISNDELQAEYEKNKEK 263 (631) Q Consensus 185 ~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~y-v~~~~~~~~~~~~vt~~ei~~~Y~~~~~~ 263 (631) .......-.+-. ....+. +..+..++....+.+.. +.+..-.-...+.||++++..+++..... T Consensus 90 ~l~~~~~~~l~~------------~g~~~e---e~~~ee~~~~Aek~vK~~lil~~IA~~e~I~vseeEi~~~i~~~A~~ 154 (166) T 1t11_A 90 VLRQQAAQRFGG------------NVEAAA---QLPRELFEEQAKRRVVVGLLLGEVIRTHELKADEEKVKALITEMATA 154 (166) T ss_dssp HHHHHHHHHSSC------------SHHHHT---TSCGGGTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHCC------------CHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 999999988277------------834444---66788999999999999999999999978988999999999999984 Q ss_pred HHHHH Q ss_conf 43321 Q gi|254781158|r 264 YFSPE 268 (631) Q Consensus 264 f~~pe 268 (631) |+.+. T Consensus 155 yg~~~ 159 (166) T 1t11_A 155 YEDPS 159 (166) T ss_dssp C---- T ss_pred CCCHH T ss_conf 69989 No 30 >>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae} (A:) Probab=91.45 E-value=0.75 Score=22.93 Aligned_cols=38 Identities=5% Similarity=0.163 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 38999999999999999999849824889999999634 Q gi|254781158|r 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122 (631) Q Consensus 85 l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~ 122 (631) +..+..+.++.+.++.+..+...+.++...|...+... T Consensus 81 ~~~~~~~~~~~~~i~~~l~~~~~~~lpe~~i~~e~~~~ 118 (218) T 1zxj_A 81 LTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVMEGL 118 (218) T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEEECCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 99999999999999999987488889999999999998 No 31 >>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structure initiative; 1.70A {Plasmodium falciparum 3D7} PDB: 2auc_A (A:80-146) Probab=66.86 E-value=6.3 Score=16.88 Aligned_cols=43 Identities=5% Similarity=0.164 Sum_probs=33.3 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999984982488999999963476554210239899999998 Q gi|254781158|r 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142 (631) Q Consensus 96 ~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~ 142 (631) ..-+.+....+|+.+|++++...+... +.+|+.|-+-|..++. T Consensus 24 ~~el~~~l~~lg~~~~~~e~~~~~~d~----d~dg~I~~~eF~~~~~ 66 (67) T 2qac_A 24 KSQMKNILTTWGDALTDQEAIDALNAF----SSEDNIDYKLFCEDIL 66 (67) T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHH----CSSSEEEHHHHHHHHT T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHC----CCCCCCCHHHHHHHHH T ss_conf 999999999808999999999999964----9899894999999970 No 32 >>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} (C:89-149) Probab=66.34 E-value=6.5 Score=16.82 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=35.6 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999999999849824889999999634765542102398999999986 Q gi|254781158|r 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 94 i~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631) |...-+.+....+|+.+|++++...++.. .+.+|+.|-+.|..++.+ T Consensus 14 I~~~El~~~l~~~g~~~~~~~~~~l~~~~---~d~dG~I~~~eF~~~~~~ 60 (61) T 2mys_C 14 VMGAELRHVLATLGEKMTEEEVEELMKGQ---EDSNGCINYEAFVKHIMS 60 (61) T ss_pred EEHHHHHHHHHHHCCCCCHHHHHHHHHCC---CCCCCEEEHHHHHHHHHC T ss_conf 73389999999808999899999999507---899986869999999855 No 33 >>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} (C:80-156) Probab=56.87 E-value=9.5 Score=15.73 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=36.5 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 9999999998498248899999996347655421023989999999861 Q gi|254781158|r 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 (631) Q Consensus 96 ~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~ 144 (631) ..-+......+|..+++.+|...+...-.-.|.+|..+-+.|..++... T Consensus 24 ~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~d~dG~I~~~eF~~~~~~~ 72 (77) T 1wdc_C 24 GAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAG 72 (77) T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHHHC T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCC T ss_conf 8999999998189999999999999866279999768699999999349 No 34 >>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} (A:111-162) Probab=54.88 E-value=10 Score=15.53 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=34.0 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9999999849824889999999634765542102398999999986 Q gi|254781158|r 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 98 ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631) =|....+++|+.++++++...|...-. |-+|+.|-+-|.+++.+ T Consensus 7 el~~~l~~~g~~l~~~ei~~mi~~~D~--d~dG~I~~~EF~~~~~~ 50 (52) T 1top_A 7 ELGEILRATGEHVTEEDIEDLMKDSDK--NNDGRIDFDEFLKMMEG 50 (52) T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHCT--TCSSSBCHHHHHHHHHS T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCC--CCCCCEEHHHHHHHHHH T ss_conf 999887324787879999999998689--99991969999999971 No 35 >>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} (A:1-217) Probab=50.41 E-value=12 Score=15.07 Aligned_cols=20 Identities=5% Similarity=-0.017 Sum_probs=15.1 Q ss_pred HHHHHHCCCCHHHHHHHHHH Q ss_conf 65542102398999999986 Q gi|254781158|r 124 LFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 124 ~Fq~~~G~Fd~~~~~~~L~~ 143 (631) .|.|++|.+|.+.+...++. T Consensus 22 pf~~~d~~iD~~~~~~~i~~ 41 (217) T 3d0c_A 22 PFLEGTREIDWKGLDDNVEF 41 (217) T ss_dssp CBCTTTCCBCHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHH T ss_conf 87799998399999999999 No 36 >>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} (B:91-151) Probab=43.40 E-value=15 Score=14.37 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=30.6 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999999849824889999999634765542102398999999986 Q gi|254781158|r 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 97 ~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631) .-+.+....+|..++++++...+.-. .+.+|+.|-+-|..++.+ T Consensus 17 ~El~~~l~~~g~~~~~~~~~~~~~~D---~d~dG~I~~~EF~~~~~~ 60 (61) T 1w7j_B 17 AELRHVLTTLGEKMTEEEVETVLAGH---EDSNGCINYEAFLKHILS 60 (61) T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHTTC---CCTTSEEEHHHHHHHTC- T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHC---CCCCCCEEHHHHHHHHHC T ss_conf 99999999808999999999998318---899993959999999855 No 37 >>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} (B:93-166) Probab=43.00 E-value=16 Score=14.33 Aligned_cols=50 Identities=8% Similarity=0.039 Sum_probs=37.7 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9999999999999849824889999999634765542102398999999986 Q gi|254781158|r 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 92 ~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631) ..|...-+......+|..+|+.++...+.... .+.+|.+|-..|..++.. T Consensus 18 G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~D--~d~dg~I~~~eF~~~~~~ 67 (74) T 2mys_B 18 GSIKKSFLEELLTTGGGRFTPEEIKNMWAAFP--PDVAGNVDYKNICYVITH 67 (74) T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC--CCCCCCEEHHHHHHHHCC T ss_conf 00445678777887525899999999999848--999891929999999757 No 38 >>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} (A:) Probab=40.10 E-value=6.7 Score=16.74 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=31.3 Q ss_pred CCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 00012578899987555545--5543321123788753000014788875303 Q gi|254781158|r 242 KEKKIEISNDELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 242 ~~~~~~vt~~ei~~~Y~~~~--~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) +...+.+|+++|+.+|...- .+...+..+.+..+.|.+.++|..++..+.. T Consensus 43 ~v~nl~~te~~l~~~F~~~G~v~~v~i~~~~~~afV~f~~~e~A~~Ai~~l~~ 95 (121) T 2bz2_A 43 YVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNG 95 (121) T ss_dssp EEECSSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTT T ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCC T ss_conf 87899699999999999868850124347798888996680999999996599 No 39 >>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A (A:) Probab=39.41 E-value=18 Score=13.98 Aligned_cols=29 Identities=7% Similarity=0.033 Sum_probs=12.4 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 42102398999999986110056776788 Q gi|254781158|r 127 GKDNKFSHDVFVSRLAREGINEKEYIDHY 155 (631) Q Consensus 127 ~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~ 155 (631) +.+|..|...++.+|...|++++.....+ T Consensus 44 d~~G~I~~~el~~~l~~~gl~~~el~~i~ 72 (121) T 3fia_A 44 PISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121) T ss_dssp CBTTBEEHHHHHHHHGGGCCCHHHHHHHH T ss_pred CCCCEECHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99984829999999999299999999999 No 40 >>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C (C:) Probab=37.42 E-value=19 Score=13.78 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=12.0 Q ss_pred HHHCCCCHHHHHHHHHHHHHH Q ss_conf 421023989999999861100 Q gi|254781158|r 127 GKDNKFSHDVFVSRLAREGIN 147 (631) Q Consensus 127 ~~~G~Fd~~~~~~~L~~~g~t 147 (631) +.+|..+.+-|..+|+..|+. T Consensus 23 d~~G~I~~~el~~~l~~~g~~ 43 (159) T 2ovk_C 23 GRDGDVDAAKVGDLLRCLGMN 43 (159) T ss_dssp TSSSEEEGGGHHHHHHHTTCC T ss_pred CCCCCCCHHHHHHHHHHCCCC T ss_conf 999809799999999982898 No 41 >>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A (A:) Probab=35.45 E-value=8.4 Score=16.08 Aligned_cols=46 Identities=9% Similarity=0.192 Sum_probs=26.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|...-.--...-.+.+..+.|.+.++|..++..+.. T Consensus 22 ~~~~~~l~~~f~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~~ 67 (103) T 2dgu_A 22 TVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNG 67 (103) T ss_dssp TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCC T ss_conf 8999999999987451420111121257886899999999998689 No 42 >>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=34.77 E-value=11 Score=15.38 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=29.9 Q ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 5788999875555455--5433211237887530000147888753036 Q gi|254781158|r 247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g 293 (631) .+++++|+.+|...-. ....+..+.+..|.|.+.+.|+.++..++.. T Consensus 19 ~~te~~l~~~f~~~G~i~~~~~~~~~~~afV~f~~~e~A~~Ai~~l~g~ 67 (93) T 2cqh_A 19 AVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGK 67 (93) T ss_dssp TCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTT T ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCHHHHHHHHHHCCCC T ss_conf 7557899988987198148888535648899849999999999980798 No 43 >>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=34.40 E-value=9.4 Score=15.77 Aligned_cols=50 Identities=12% Similarity=0.137 Sum_probs=29.0 Q ss_pred CCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 00125788999875555455--543321123788753000014788875303 Q gi|254781158|r 243 EKKIEISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 243 ~~~~~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) ...+.+|+++|+.+|...-. .......+....+.|.+.++|+.+...++. T Consensus 20 V~nl~~te~dl~~~F~~~G~I~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~~ 71 (97) T 1x5p_A 20 VYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNG 71 (97) T ss_dssp EECSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTT T ss_pred EEECCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCC T ss_conf 9954899999999999819852886258897899998987999999998599 No 44 >>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=34.32 E-value=11 Score=15.35 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=29.6 Q ss_pred CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 578899987555545--55433211237887530000147888753036 Q gi|254781158|r 247 EISNDELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~--~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g 293 (631) .+|+++|+.+|...- .+......+....|.|.+.+.|+.+++.++.. T Consensus 38 ~~te~~l~~~F~~~G~I~~~~~~~~k~~afV~f~~~e~A~~A~~~l~~~ 86 (114) T 2cq2_A 38 GVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK 86 (114) T ss_dssp TCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC T ss_pred CCCHHHHHHHHCCCCCCCEEEEECCCEEEEEEECCHHHHHHHHHHHCCC T ss_conf 8769999998768477748976047618999978889999999997888 No 45 >>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} (A:118-132,A:255-301,A:415-432) Probab=34.23 E-value=21 Score=13.45 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=19.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 4554322333345679999888886556577654201 Q gi|254781158|r 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398 (631) Q Consensus 362 ~~~~evk~~I~~~l~~~~a~~~~~~~~~~i~d~~~~g 398 (631) .++++.|+.|+..|..+.....-....+++-+.+... T Consensus 22 eTLeeLK~~Irk~Le~e~e~~~~~~~k~~ild~Lve~ 58 (80) T 1w26_A 22 GSVEGLRAEVRKNXERELKSAIRNRVKSQAIEGLVKA 58 (80) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 3799999998889999999999988778899987450 No 46 >>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} (A:61-148) Probab=34.13 E-value=21 Score=13.44 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=36.5 Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 999999999999849824889999999634765542102398999999986 Q gi|254781158|r 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 93 li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631) .|...-+......++..++++++...+..... +.+|+.+-+-|..++.+ T Consensus 39 ~i~~~el~~~l~~~~~~~~~~~~~~if~~~D~--d~dG~i~~~eF~~~~~~ 87 (88) T 1exr_A 39 LISAAELRHVMTNLGEKLTDDEVDEMIREADI--DGDGHINYEEFVRMMVS 87 (88) T ss_dssp CBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCS--SSSSSBCHHHHHHHHHC T ss_pred EECHHHHHHHHHHCCCCCCHHHHHHHHHHHCC--CCCCEEEHHHHHHHHHC T ss_conf 49399997787502665789999999998589--99886859999999846 No 47 >>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=32.27 E-value=9.6 Score=15.69 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=24.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+..|...-.--...-.+....+.|.+.+.|+.+...++. T Consensus 21 ~~te~~l~~~f~~~G~i~~~~~~~~~afV~f~~~~~a~~A~~~l~~ 66 (92) T 2dgt_A 21 TCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDN 66 (92) T ss_dssp SCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCEEEEEECCHHHHHHHHHHCCC T ss_conf 8989999999998699867878111789997999999999998299 No 48 >>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=31.26 E-value=13 Score=14.92 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=23.6 Q ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 5788999875555455--5433211237887530000147888753036 Q gi|254781158|r 247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~g 293 (631) .+|+++|+.+|...-. ....+..+....+.|.+.+.|+.+..+...| T Consensus 23 ~~te~~l~~~F~~~G~i~~~~~~~~~~~afV~f~~~~~A~~Ai~~~~~~ 71 (85) T 2ytc_A 23 TITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNK 71 (85) T ss_dssp TSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTT T ss_pred CCCHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHCCC T ss_conf 8999999998604885787687035741178988999999999986199 No 49 >>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} (A:1-219) Probab=30.30 E-value=25 Score=13.03 Aligned_cols=18 Identities=6% Similarity=0.017 Sum_probs=13.6 Q ss_pred HHHHCCCCHHHHHHHHHH Q ss_conf 542102398999999986 Q gi|254781158|r 126 HGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 126 q~~~G~Fd~~~~~~~L~~ 143 (631) .+++|.+|.+.+...++. T Consensus 26 f~~d~~iD~~~~~~~i~~ 43 (219) T 1xxx_A 26 FSGDGSLDTATAARLANH 43 (219) T ss_dssp BCTTSCBCHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHH T ss_conf 788969199999999999 No 50 >>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A (A:95-158) Probab=30.00 E-value=25 Score=13.00 Aligned_cols=44 Identities=5% Similarity=0.118 Sum_probs=30.5 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9999999849824889999999634765542102398999999986 Q gi|254781158|r 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 98 ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631) =+.+....+|...+++++...+.... .+.+|..+-+.|..++.. T Consensus 18 El~~~l~~~~~~~~~~~~~~~~~~~D--~~~dG~I~~~eF~~~~~~ 61 (64) T 2jnf_A 18 VMREILAELDETLSSEDLDAMIDEID--ADGSGTVDFEEFMGVMTG 61 (64) T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHC--SSCCSEECSHHHHHHTSS T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHC--CCCCCCEEHHHHHHHHHC T ss_conf 77776553025686999999999978--999993979999999755 No 51 >>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} (A:70-140) Probab=29.85 E-value=25 Score=12.99 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=24.3 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999984982488999999963476554210239899999998 Q gi|254781158|r 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142 (631) Q Consensus 99 l~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~ 142 (631) +......+|+.+|+++|...+.... ..+|+.|-+.|..++. T Consensus 29 l~~~l~~~g~~~~~~e~~~~~~~~d---~~dg~I~~~eF~~~~~ 69 (71) T 1ggw_A 29 LRYVLTSLGEKLSNEEMDELLKGVP---VKDGMVNYHDFVQMIL 69 (71) T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHTT---CSSCCSTTTHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHC---CCCCEECHHHHHHHHC T ss_conf 9999998189999999999999977---9989996999999881 No 52 >>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} (A:) Probab=29.68 E-value=25 Score=12.97 Aligned_cols=47 Identities=9% Similarity=-0.156 Sum_probs=23.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 24889999999634765542102398999999986110056776788 Q gi|254781158|r 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155 (631) Q Consensus 109 ~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~ 155 (631) .+|.+++...-..--.|=+.+|..+...+..+|...|+++..+...+ T Consensus 8 ~ls~e~~~~~~~~F~~~Dd~~G~I~~~el~~~l~~lg~~~~~~~~i~ 54 (106) T 1eh2_A 8 AVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106) T ss_dssp SSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCHHHHHHHH T ss_conf 26999999999999981899980819999999986489899999999 No 53 >>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A (A:) Probab=29.49 E-value=12 Score=15.11 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=24.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|...-.-....-.+....+.|.+.+.|..++..++. T Consensus 42 ~~te~~l~~~F~~fG~i~~~~~~~g~afV~f~~~~~A~~Ai~~l~g 87 (108) T 2jvo_A 42 DVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHG 87 (108) T ss_dssp TCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCC T ss_conf 7999999999986462211011011568998999999999998299 No 54 >>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} (A:1-219) Probab=28.97 E-value=26 Score=12.89 Aligned_cols=18 Identities=0% Similarity=-0.070 Sum_probs=13.7 Q ss_pred HHHHCCCCHHHHHHHHHH Q ss_conf 542102398999999986 Q gi|254781158|r 126 HGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 126 q~~~G~Fd~~~~~~~L~~ 143 (631) .+++|.+|.+.+...++. T Consensus 24 f~~dg~iD~~~~~~~i~~ 41 (219) T 1xky_A 24 FDINGNIDFAKTTKLVNY 41 (219) T ss_dssp BCTTSSBCHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHH T ss_conf 689959499999999999 No 55 >>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A (A:) Probab=28.52 E-value=26 Score=12.84 Aligned_cols=18 Identities=0% Similarity=-0.103 Sum_probs=13.2 Q ss_pred HHHHCCCCHHHHHHHHHH Q ss_conf 542102398999999986 Q gi|254781158|r 126 HGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 126 q~~~G~Fd~~~~~~~L~~ 143 (631) .+++|..|.+.+...+.. T Consensus 20 f~~d~~ID~~~~~~~~~~ 37 (309) T 3fkr_A 20 FADTGDLDLASQKRAVDF 37 (309) T ss_dssp BCTTSSBCHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHH T ss_conf 896879599999999999 No 56 >>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=27.95 E-value=13 Score=14.79 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=21.7 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|.+.-.--..--.+....+.|.+.++|+.+.+.++. T Consensus 20 ~~te~~l~~~f~~fG~v~~~~~~~~~afV~f~~~~~A~~Ai~~~~g 65 (90) T 2dnp_A 20 ACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNG 65 (90) T ss_dssp TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCEEEEEECCHHHHHHHHHHCCC T ss_conf 8989999999998699767756163559998999999999998299 No 57 >>1b7f_A Protein (SXL-lethal protein); splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} (A:1-84) Probab=26.37 E-value=17 Score=14.02 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=15.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 123788753000014788875303 Q gi|254781158|r 269 IRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 269 ~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+.+..+.|.+.++|+.++..++. T Consensus 44 ~~g~afv~f~~~~~a~~a~~~l~g 67 (84) T 1b7f_A 44 SYGYAFVDFTSEMDSQRAIKVLNG 67 (84) T ss_dssp ECSEEEEEESSHHHHHHHHHHHTT T ss_pred CCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 211122234665776667764020 No 58 >>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} (A:) Probab=26.10 E-value=15 Score=14.45 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=27.0 Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455-543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~-~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+++++|+.++...-- .-.....+.+..+.|.+.+.|+.+.+.+.. T Consensus 16 ~~t~~~l~~~f~~~G~~~~~~~~~~~~afV~f~~~~~a~~Ai~~l~g 62 (88) T 1wg1_A 16 DSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQ 62 (88) T ss_dssp SCCHHHHHHHTCSSCCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHCC T ss_conf 50056888777504861367531588228998999999999998599 No 59 >>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} (A:1-217) Probab=25.66 E-value=30 Score=12.51 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=15.1 Q ss_pred HHHHHHCCCCHHHHHHHHHH Q ss_conf 65542102398999999986 Q gi|254781158|r 124 LFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 124 ~Fq~~~G~Fd~~~~~~~L~~ 143 (631) .|.+.||.+|.+.+...++. T Consensus 22 pf~~~d~~iD~~~~~~~i~~ 41 (217) T 3e96_A 22 PFRKSDGSIDWHHYKETVDR 41 (217) T ss_dssp CBCTTTCCBCHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHH T ss_conf 96699988999999999999 No 60 >>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=25.41 E-value=15 Score=14.45 Aligned_cols=46 Identities=24% Similarity=0.325 Sum_probs=22.8 Q ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455--543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|...-. .......+....+.|.+.++|..+.+.+.. T Consensus 26 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~afV~f~~~~~A~~Ai~~l~g 73 (99) T 2cpd_A 26 STSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNG 73 (99) T ss_dssp TCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSS T ss_pred CCCHHHHHHHHHCCCCEEEEEEECCCEEEEEEECCHHHHHHHHHHCCC T ss_conf 778679999976279789999803321777886352778999987099 No 61 >>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} (C:1-79) Probab=25.22 E-value=30 Score=12.46 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=31.2 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 999999849824889999999634765542102398999999986 Q gi|254781158|r 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 99 l~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631) |.+....+|+.+++.++...+... .+.+|..+-+-|..++.. T Consensus 33 l~~~l~~lg~~~~~~e~~~~~~~D---~~~~G~I~f~EF~~~~~~ 74 (79) T 1wdc_C 33 LGDVCRCLGINPRNEDVFAVGGTH---KMGEKSLPFEEFLPAYEG 74 (79) T ss_dssp HHHHHHHTTCCCCHHHHHHTTCCS---STTSCEECHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHH T ss_conf 999999827998688875554430---220344545666543110 No 62 >>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B (B:) Probab=25.19 E-value=30 Score=12.45 Aligned_cols=40 Identities=5% Similarity=0.022 Sum_probs=24.6 Q ss_pred CCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 24889999999634765-54210239899999998611005 Q gi|254781158|r 109 EADHGRVWGEIARSPLF-HGKDNKFSHDVFVSRLAREGINE 148 (631) Q Consensus 109 ~vsd~~v~~~i~~~p~F-q~~~G~Fd~~~~~~~L~~~g~t~ 148 (631) ..|.+++...-..-..| .+.+|..+...+...|...+.+. T Consensus 9 ~lt~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~ 49 (153) T 2ovk_B 9 KLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153) T ss_dssp TCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCC T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHHH T ss_conf 99999999999999997789997288299999999998756 No 63 >>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} (A:) Probab=24.86 E-value=15 Score=14.35 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=22.8 Q ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455--543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|...-. ....+..+....+.|.+.+.|.++...++. T Consensus 18 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~~fv~f~~~~~A~~A~~~l~g 65 (89) T 2wbr_A 18 QIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNN 65 (89) T ss_dssp TCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHCCCCCCCCEECCCCCEEEEEEECCHHHHHHHHHHHCC T ss_conf 888999997671244533000145761999998121788999998689 No 64 >>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junction complex, signaling protein; 1.85A {Drosophila melanogaster} (B:) Probab=24.62 E-value=24 Score=13.06 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=24.3 Q ss_pred CCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455--------543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKE--------KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~--------~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+++++|+.+|...-. ...+...+....+.|.+.++|+.+...++. T Consensus 37 ~~~e~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~ 90 (110) T 1oo0_B 37 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 90 (110) T ss_dssp TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCC T ss_conf 898999999998459879999974178887650679998899999999998099 No 65 >>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=24.47 E-value=15 Score=14.38 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=27.8 Q ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455--543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|...-. .......+....|.|.+.+.|+.+++.++. T Consensus 26 ~~te~~l~~~f~~~G~i~~~~~~~~~~~afV~f~~~~~A~~Ai~~l~~ 73 (101) T 2cq1_A 26 EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 73 (101) T ss_dssp TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCHHHHHHHHHHHCC T ss_conf 898999997664035220355314633899996999999999999759 No 66 >>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=24.27 E-value=21 Score=13.51 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 23788753000014788875303 Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) +....+.|.+.+.|+.+++.++. T Consensus 54 ~~~~fv~f~~~e~a~~Ai~~lng 76 (102) T 1x5s_A 54 RGFGFVTFENIDDAKDAMMAMNG 76 (102) T ss_dssp CSEEEEECSSHHHHHHHHHHHTT T ss_pred CCCEEEEECCHHHHHHHHHHHCC T ss_conf 57535787688999999998099 No 67 >>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:29-108) Probab=24.01 E-value=21 Score=13.43 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=16.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 1123788753000014788875303 Q gi|254781158|r 268 EIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 268 e~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) ..+....+.|.+.++|..+...++. T Consensus 40 ~~~g~afv~f~~~~~A~~ai~~l~~ 64 (80) T 2qfj_A 40 KHKGFAFVEYEVPEAAQLALEQMNS 64 (80) T ss_dssp CCCSEEEEEESSHHHHHHHHHHHSS T ss_pred CCCCEEEEEECCHHHHHHHHHHHCC T ss_conf 4342024784266888999986237 No 68 >>3h2u_B Raver-1; focal adhesion, actin cytoskeleton, RNP motif, RNA binding, alternative splicing, cytoplasm, nucleus, phosphoprotein, RNA-binding; 2.75A {Homo sapiens} PDB: 3h2v_E (B:20-91) Probab=23.97 E-value=15 Score=14.39 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=23.6 Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455-543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~-~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+++++|+.++...-. .-.....+....+.|.+.++|+.+...++. T Consensus 12 ~~~~~~l~~~f~~~G~~~~~~~~~~~~afV~f~~~~~a~~ai~~l~~ 58 (72) T 3h2u_B 12 DVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQ 58 (72) T ss_dssp TCCHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCEEEEEECCHHHHHHHHHCCCC T ss_conf 68899999999865968999538787899998425878776531322 No 69 >>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} (A:) Probab=23.81 E-value=18 Score=13.99 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=24.4 Q ss_pred CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455--543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKE--KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~--~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+++++|+.+|...-. .......+....|.|.+.++|..+...+.. T Consensus 28 ~~~~~~L~~~f~~~G~v~~~~~~~~~~~afV~f~~~~~A~~Ai~~l~~ 75 (97) T 1why_A 28 NTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRG 75 (97) T ss_dssp SCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCHHHHHHHHHHHCC T ss_conf 869999999875015531388712211888765898999999999788 No 70 >>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} (A:117-202) Probab=23.57 E-value=26 Score=12.83 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 123788753000014788875303 Q gi|254781158|r 269 IRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 269 ~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+....+.|.+.++|..+...+.+ T Consensus 42 ~~g~~fV~f~~~e~a~~ai~~l~~ 65 (86) T 2ghp_A 42 SRRFAYIDVTSKEDARYCVEKLNG 65 (86) T ss_dssp -CCEEEEECSSHHHHHHHHHHHTT T ss_pred CCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 667522235666788889987073 No 71 >>3fwb_A Cell division control protein 31; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.50A {Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A (A:93-161) Probab=23.27 E-value=33 Score=12.22 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=30.3 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9999999849824889999999634765542102398999999986 Q gi|254781158|r 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 98 ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631) -+......+|...+++++...+..... +.+|+.+-+.|..++.+ T Consensus 25 e~~~~l~~~~~~~~~~~~~~~~~~~D~--d~~g~I~~~eF~~~~~~ 68 (69) T 3fwb_A 25 NLRRVAKELGETLTDEELRAMIEEFDL--DGDGEINENEFIAICTD 68 (69) T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHTTCS--SSSSSEEHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCEEHHHHHHHHHC T ss_conf 778888764045869999999998589--99991969999999855 No 72 >>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=22.98 E-value=22 Score=13.30 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=22.5 Q ss_pred CCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455---543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKE---KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~---~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|...-. .......+....+.|.+.++|..++..++. T Consensus 30 ~~~e~~l~~~F~~~G~v~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~g 78 (97) T 2e5j_A 30 DARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQG 78 (97) T ss_dssp TCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEEECCCCCEEEEEECC T ss_conf 9999999999998698503011347763499998302442002453134 No 73 >>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} (A:85-148) Probab=22.69 E-value=34 Score=12.14 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=31.6 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999999849824889999999634765542102398999999986 Q gi|254781158|r 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 97 ~ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631) .-+.+..+.+|..++++++...+..... +.+|..+-+.|..++.+ T Consensus 19 ~el~~~l~~~~~~~~~~~~~~~~~~~D~--d~dg~I~~~eF~~~~~~ 63 (64) T 1m45_A 19 GDLRYMLTGLGEKLTDAEVDELLKGVEV--DSNGEIDYKKFIEDVLR 63 (64) T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHTTCCC--CTTSEEEHHHHHHHHHC T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCEEHHHHHHHHHC T ss_conf 9999999982899999999999998688--99994979999999975 No 74 >>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} (A:433-550) Probab=22.01 E-value=35 Score=12.06 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=12.9 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2102398999999986110056776788 Q gi|254781158|r 128 KDNKFSHDVFVSRLAREGINEKEYIDHY 155 (631) Q Consensus 128 ~~G~Fd~~~~~~~L~~~g~t~~~~~~~~ 155 (631) .+|..+.+.+..+|...|+++..+...+ T Consensus 38 ~~G~Is~~el~~~l~~~~l~~~~~~~i~ 65 (118) T 2qpt_A 38 ADGKLSGSKAKTWMVGTKLPNSVLGRIW 65 (118) T ss_dssp SSSEECHHHHHHHHHHTTCCHHHHHHHH T ss_pred CCCEECHHHHHHHHHHCCCCHHHHHHHC T ss_conf 8887638999999997499878997633 No 75 >>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=21.84 E-value=19 Score=13.72 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=23.8 Q ss_pred CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 578899987555545--5543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~--~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|...- ..+..+..+....+.|.+.++|..+++.+.. T Consensus 26 ~~t~~~l~~~f~~~G~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g 73 (99) T 2cpj_A 26 DITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDN 73 (99) T ss_dssp TCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCC T ss_conf 788999999999739861763316774799998999999999998199 No 76 >>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} (A:1-245) Probab=21.40 E-value=36 Score=11.98 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=12.5 Q ss_pred HHHCCCCHHHHHHHHH Q ss_conf 4210239899999998 Q gi|254781158|r 127 GKDNKFSHDVFVSRLA 142 (631) Q Consensus 127 ~~~G~Fd~~~~~~~L~ 142 (631) +++|..|.+.+...++ T Consensus 17 ~~d~~iD~~~~~~~i~ 32 (245) T 3eb2_A 17 DAEGRVRADVMGRLCD 32 (245) T ss_dssp CTTSCBCHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHH T ss_conf 8785969999999999 No 77 >>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} (A:) Probab=21.34 E-value=36 Score=11.97 Aligned_cols=19 Identities=32% Similarity=0.669 Sum_probs=12.9 Q ss_pred CCCCCHHHHHHHHHHHHHH Q ss_conf 5678988999997656665 Q gi|254781158|r 205 IADPSNAVLTQWFEKYKDN 223 (631) Q Consensus 205 ~~~~td~el~~yy~~nk~~ 223 (631) .+.||++||+++|++...+ T Consensus 38 aP~Pte~EL~ewwEe~lkn 56 (110) T 2hg7_A 38 APLPTQAELETWWEELQKN 56 (110) T ss_dssp SCCCCHHHHHHHHHHHHHS T ss_pred CCCCCHHHHHHHHHHHHHC T ss_conf 8898899999999998647 No 78 >>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=21.30 E-value=22 Score=13.29 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=20.7 Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455-543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~-~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|...-. ....-..+....+.|.+.++|..++..+.. T Consensus 26 ~~t~~~l~~~f~~~G~v~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~ 72 (108) T 1x4c_A 26 SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDN 72 (108) T ss_dssp SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSS T ss_pred CCCHHHHHHHHHHCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHCC T ss_conf 88899999997630112310111020579986999999999999788 No 79 >>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} (A:1-221) Probab=21.11 E-value=36 Score=11.94 Aligned_cols=18 Identities=6% Similarity=-0.165 Sum_probs=14.2 Q ss_pred HHHHCCCCHHHHHHHHHH Q ss_conf 542102398999999986 Q gi|254781158|r 126 HGKDNKFSHDVFVSRLAR 143 (631) Q Consensus 126 q~~~G~Fd~~~~~~~L~~ 143 (631) .+++|.+|.+.+...++. T Consensus 28 f~~d~~iD~~~~~~~i~~ 45 (221) T 3cpr_A 28 FTESGDIDIAAGREVAAY 45 (221) T ss_dssp BCTTSCBCHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHH T ss_conf 589959399999999999 No 80 >>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=20.86 E-value=29 Score=12.61 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 123788753000014788875303 Q gi|254781158|r 269 IRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 269 ~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+.+..+.|.+.++|+.++..|+. T Consensus 51 ~~g~afV~f~~~e~A~~Ai~~l~~ 74 (109) T 2dis_A 51 NRGFAFVEYESHRAAAMARRKLMP 74 (109) T ss_dssp TCCEEEEEESSHHHHHHHHTTTTT T ss_pred CCEEEEEEECCHHHHHHHHHHHCC T ss_conf 640258998899999999998532 No 81 >>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} (A:1-83) Probab=20.82 E-value=24 Score=13.15 Aligned_cols=46 Identities=13% Similarity=0.254 Sum_probs=23.6 Q ss_pred CCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455--------543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKE--------KYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~--------~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|...-. ....+..+....+.|.+.+.|+.+...+.. T Consensus 13 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~ai~~l~g 66 (83) T 1fxl_A 13 NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 66 (83) T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHCC T ss_conf 798999999997059989999996289897376899983585887789885101 No 82 >>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} (A:) Probab=20.45 E-value=37 Score=11.85 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=24.9 Q ss_pred CCCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 5788999875555455543---------321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNKEKYF---------SPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~~~f~---------~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+++++|+..+.+.-..|+ ....+.+..+.|.+.+.|+.++..++. T Consensus 19 ~~~~~~l~~~l~~~f~~~g~i~~v~~~~~~~~k~~afv~f~~~~~A~~a~~~l~~ 73 (97) T 1nu4_A 19 KIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG 73 (97) T ss_dssp TSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHCC T ss_conf 9999999999999714588679999804999585699998999999999998499 No 83 >>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} (B:1-90) Probab=20.39 E-value=37 Score=11.84 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=30.5 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 9999998498248899999996347655421023989999999861 Q gi|254781158|r 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 (631) Q Consensus 99 l~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~ 144 (631) +......+|..+|++++...+.....=.+.+|..|-+.|..++.+. T Consensus 32 l~~~l~~~g~~~s~~~~~~l~~~~~~D~~~~g~I~~~EF~~~~~~~ 77 (90) T 1w7j_B 32 CGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAV 77 (90) T ss_dssp HHHHHHHTTCCCCHHHHHHHTTCCCHHHHTTCEEEHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 9999998613898999999998875311346840089998776753 No 84 >>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} (A:) Probab=20.30 E-value=20 Score=13.58 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=27.2 Q ss_pred CCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 578899987555545--5543321123788753000014788875303 Q gi|254781158|r 247 EISNDELQAEYEKNK--EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 247 ~vt~~ei~~~Y~~~~--~~f~~pe~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) .+|+++|+.+|...- ........+.+..+.|.+.++|+.+.+.+.. T Consensus 26 ~~~e~~l~~~F~~~G~i~~~~~~~~~~~afV~f~~~~~A~~a~~~l~~ 73 (104) T 1wex_A 26 SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAAD 73 (104) T ss_dssp SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCCCEEEEEECEEEEEEECCHHHHHHHHHHHCC T ss_conf 998999999986313342102321010478895899999999998737 No 85 >>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=20.20 E-value=26 Score=12.84 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=16.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH Q ss_conf 237887530000147888753036514 Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKKGKKF 296 (631) Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~g~~F 296 (631) +....+.|.+.+.|+.+++.+..+..| T Consensus 58 ~g~afV~f~~~~~a~~Ai~~l~~~~~~ 84 (107) T 2cph_A 58 RGFGFVDFITKQDAKKAFNALCHSTHL 84 (107) T ss_dssp CSEEEEEESSHHHHHHHHHHHHTCCBS T ss_pred CCEEEEEECCHHHHHHHHHHCCCCCEE T ss_conf 777999989999999999970199588 No 86 >>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A (A:91-172) Probab=20.06 E-value=26 Score=12.85 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 1123788753000014788875303 Q gi|254781158|r 268 EIRTVEQLVFPNQKEADEAFQSLKK 292 (631) Q Consensus 268 e~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631) ..+....+.|.+.++|+.+...+++ T Consensus 44 ~~~g~afV~f~~~~~a~~a~~~ln~ 68 (82) T 2g4b_A 44 LSKGYAFCEYVDINVTDQAIAGLNG 68 (82) T ss_dssp SEEEEEEEEESSTTHHHHHHHHHTT T ss_pred CCCCEEEEEECCHHHHHHHHHHCCC T ss_conf 6333099998689999999997099 Done!