Query gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 631
No_of_seqs 167 out of 2728
Neff 8.8
Searched_HMMs 23785
Date Wed Jun 1 02:42:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781158.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m5y_A SurviVal protein, survi 100.0 5.3E-37 2.2E-41 258.2 23.3 381 40-504 6-395 (408)
2 1m5y_A SurviVal protein, survi 99.7 5.5E-15 2.3E-19 114.3 20.0 127 264-393 259-399 (408)
3 2kgj_A Peptidyl-prolyl CIS-tra 99.7 2.8E-18 1.2E-22 135.8 1.2 94 265-361 1-98 (102)
4 1jns_A Peptidyl-prolyl CIS-tra 99.7 1E-17 4.4E-22 132.1 2.6 87 268-356 2-91 (92)
5 1eq3_A Peptidyl-prolyl CIS/tra 99.6 3.6E-17 1.5E-21 128.6 1.1 87 269-357 2-96 (96)
6 1yw5_A Peptidyl prolyl CIS/tra 99.6 2.7E-16 1.1E-20 122.9 4.2 72 282-355 102-177 (177)
7 3i6c_A Peptidyl-prolyl CIS-tra 99.6 9.6E-17 4E-21 125.8 1.3 92 262-355 7-123 (123)
8 2jzv_A Foldase protein PRSA; p 99.5 6.5E-16 2.7E-20 120.4 1.6 87 267-355 5-111 (111)
9 2itk_A Peptidyl-prolyl CIS-tra 99.5 8.7E-16 3.7E-20 119.5 1.8 72 282-355 92-167 (167)
10 1j6y_A Peptidyl-prolyl CIS-tra 99.5 1.2E-15 4.9E-20 118.7 0.8 73 281-355 63-139 (139)
11 3gpk_A PPIC-type peptidyl-prol 99.5 2.9E-15 1.2E-19 116.1 2.8 92 268-361 6-108 (112)
12 2pv1_A Chaperone SURA; surviVa 99.5 4E-15 1.7E-19 115.2 3.2 77 279-357 24-103 (103)
13 1zk6_A Foldase protein PRSA; a 99.5 2.4E-15 1E-19 116.7 1.6 87 268-356 3-93 (93)
14 3gpk_A PPIC-type peptidyl-prol 96.8 0.0055 2.3E-07 35.9 7.9 78 501-582 27-106 (112)
15 2pv1_A Chaperone SURA; surviVa 96.6 0.011 4.6E-07 34.0 8.1 79 499-579 24-102 (103)
16 3i6c_A Peptidyl-prolyl CIS-tra 96.3 0.016 6.7E-07 32.9 7.8 31 437-469 92-122 (123)
17 2jzv_A Foldase protein PRSA; p 96.0 0.021 8.9E-07 32.1 7.1 77 499-578 32-111 (111)
18 2itk_A Peptidyl-prolyl CIS-tra 95.9 0.037 1.5E-06 30.5 8.0 74 501-577 91-166 (167)
19 1jns_A Peptidyl-prolyl CIS-tra 95.9 0.022 9.4E-07 31.9 6.8 73 503-579 17-91 (92)
20 1zk6_A Foldase protein PRSA; a 95.8 0.019 8.1E-07 32.4 6.1 73 503-578 18-92 (93)
21 1yw5_A Peptidyl prolyl CIS/tra 95.8 0.051 2.1E-06 29.6 8.1 71 504-577 104-176 (177)
22 1j6y_A Peptidyl-prolyl CIS-tra 95.5 0.014 5.9E-07 33.2 4.4 74 501-577 63-138 (139)
23 3gty_X Trigger factor, TF; cha 95.2 0.13 5.3E-06 27.0 14.0 72 324-396 191-280 (433)
24 1w26_A Trigger factor, TF; cha 95.0 0.14 5.9E-06 26.7 11.7 22 50-71 18-39 (432)
25 2nsa_A Trigger factor, TF; cha 93.9 0.25 1E-05 25.1 14.3 100 91-225 26-126 (170)
26 2kgj_A Peptidyl-prolyl CIS-tra 93.5 0.089 3.8E-06 28.0 4.7 25 450-475 73-97 (102)
27 1eq3_A Peptidyl-prolyl CIS/tra 92.7 0.19 7.8E-06 25.9 5.4 73 504-579 17-95 (96)
28 1zxj_A MPN555, hypothetical pr 89.3 0.8 3.4E-05 21.7 10.2 76 41-122 43-118 (218)
29 1t11_A Trigger factor, TF; hel 84.6 1.5 6.1E-05 20.1 7.3 23 49-71 20-42 (392)
30 2bl0_B Myosin regulatory light 54.0 7.4 0.00031 15.4 3.7 18 129-146 19-36 (145)
31 2ovk_C Myosin catalytic light 49.6 8.7 0.00037 15.0 3.9 19 128-146 24-42 (159)
32 2ggm_A Centrin-2; EF-hand supe 45.2 10 0.00043 14.5 4.4 35 105-141 59-93 (172)
33 1m45_A MLC1P, myosin light cha 44.6 9.2 0.00039 14.8 2.0 17 104-120 31-47 (148)
34 1wdc_C Scallop myosin; calcium 44.6 10 0.00044 14.5 3.7 35 104-141 38-72 (156)
35 3dtp_E RLC, myosin regulatory 40.0 12 0.00051 14.0 2.2 16 104-119 84-99 (196)
36 2kn2_A Calmodulin; S MAPK phos 39.7 12 0.00052 14.0 4.2 44 98-143 30-73 (92)
37 1wg1_A KIAA1579 protein, homol 35.9 5.7 0.00024 16.2 -0.2 23 270-292 40-62 (88)
38 1lkj_A Calmodulin, CAM; yeast 33.4 15 0.00065 13.4 3.1 21 128-148 23-43 (146)
39 3h4s_E KCBP interacting Ca2+-b 31.4 17 0.0007 13.2 5.2 50 93-144 56-106 (135)
40 2qac_A Myosin A tail domain in 30.3 17 0.00073 13.0 3.8 22 128-149 28-49 (146)
41 2cq2_A Hypothetical protein LO 30.0 10 0.00042 14.6 0.3 23 270-292 63-85 (114)
42 2obh_A Centrin-2; DNA repair c 30.0 18 0.00074 13.0 4.2 14 105-118 34-47 (143)
43 2wbr_A GW182, gawky, LD47780P; 29.9 7.8 0.00033 15.3 -0.3 24 269-292 42-65 (89)
44 2mys_C Myosin; muscle protein, 29.5 18 0.00075 12.9 3.9 19 104-122 35-53 (149)
45 2b1u_A Calmodulin-like protein 28.6 18 0.00078 12.8 1.8 40 101-142 30-69 (71)
46 1rro_A RAT oncomodulin; calciu 28.6 19 0.00078 12.8 6.0 37 109-149 5-41 (108)
47 1bu3_A Calcium-binding protein 27.6 19 0.00081 12.7 6.3 38 106-147 3-40 (109)
48 2dnp_A RNA-binding protein 14; 26.9 10 0.00042 14.6 -0.2 22 271-292 44-65 (90)
49 2cqh_A IGF-II mRNA-binding pro 26.6 13 0.00053 13.9 0.3 24 269-292 43-66 (93)
50 2ytc_A PRE-mRNA-splicing facto 26.6 12 0.00051 14.1 0.2 24 270-293 48-71 (85)
51 1whx_A Hypothetical protein ri 26.2 11 0.00045 14.4 -0.1 24 269-292 45-68 (111)
52 1ggw_A Protein (CDC4P); light 25.9 21 0.00087 12.5 2.7 31 105-141 33-63 (140)
53 2xnq_A Nuclear polyadenylated 25.6 11 0.00045 14.4 -0.2 21 272-292 59-79 (97)
54 2dgu_A Heterogeneous nuclear r 25.1 11 0.00048 14.2 -0.2 22 271-292 46-67 (103)
55 2jnf_A Troponin C; stretch act 25.1 21 0.0009 12.4 2.5 39 102-142 39-77 (158)
56 2cpd_A Apobec-1 stimulating pr 25.1 11 0.00044 14.4 -0.3 24 269-292 50-73 (99)
57 2k7b_A CABP1, calbrain, calciu 24.9 22 0.00091 12.4 4.9 41 100-142 33-73 (76)
58 1pva_A Parvalbumin; calcium bi 24.8 22 0.00091 12.4 6.1 39 110-152 7-45 (110)
59 2ovk_B RLC, myosin regulatory 24.7 22 0.00091 12.4 3.4 41 107-147 7-48 (153)
60 2cxa_A Leucyl/phenylalanyl-tRN 24.6 11 0.00045 14.4 -0.4 14 226-239 12-25 (256)
61 1x4c_A Splicing factor, argini 24.1 13 0.00054 13.9 -0.1 21 272-292 52-72 (108)
62 2cpj_A Non-POU domain-containi 23.5 11 0.00048 14.2 -0.4 23 270-292 51-73 (99)
63 1dtl_A Cardiac troponin C; hel 23.5 23 0.00096 12.2 1.5 19 129-147 33-51 (161)
64 2dgt_A RNA-binding protein 30; 22.9 12 0.00051 14.0 -0.4 21 272-292 46-66 (92)
65 2bz2_A Negative elongation fac 22.7 13 0.00054 13.9 -0.3 23 270-292 73-95 (121)
66 1x4g_A Nucleolysin TIAR; struc 22.6 16 0.00066 13.3 0.1 23 270-292 61-83 (109)
67 1wdc_B Scallop myosin; calcium 22.3 24 0.001 12.1 4.5 32 104-141 45-76 (156)
68 1x5p_A Negative elongation fac 22.1 15 0.00062 13.5 -0.1 23 270-292 49-71 (97)
69 2dnq_A RNA-binding protein 4B; 21.0 14 0.00059 13.6 -0.4 22 271-292 43-64 (90)
70 1x4a_A Splicing factor, argini 20.9 17 0.00074 13.0 0.1 23 270-292 61-83 (109)
71 2div_A TRNA selenocysteine ass 20.7 17 0.0007 13.2 -0.1 24 269-292 51-74 (99)
72 1sjr_A Polypyrimidine tract-bi 20.6 14 0.00057 13.7 -0.5 23 271-293 85-107 (164)
73 1tiz_A Calmodulin-related prot 20.4 26 0.0011 11.8 4.8 43 99-143 23-65 (67)
74 1rz2_A Conserved hypothetical 20.1 18 0.00075 13.0 0.0 24 5-28 5-28 (254)
75 2cph_A RNA binding motif prote 20.1 19 0.00082 12.7 0.2 27 270-296 58-84 (107)
No 1
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=100.00 E-value=5.3e-37 Score=258.18 Aligned_cols=381 Identities=16% Similarity=0.129 Sum_probs=238.1
Q ss_pred CCEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 84289999878489999999999999999870889997899860138999999999999999999849824889999999
Q gi|254781158|r 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119 (631)
Q Consensus 40 ~~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i 119 (631)
..+||+|||++||..||+++++....++.+. +..+++++ .+++++|++||++.|+.++|+++||.|||++|.+.|
T Consensus 6 ~~ivA~Vng~~It~~d~~~~~~~~~~~~~~~-~~~~~~~~----~lr~qvl~~LI~~~Ll~q~A~~lgi~vsd~ev~~~i 80 (408)
T 1m5y_A 6 DKVAAVVNNGVVLESDVDGLMQSVKLNAAQA-RQQLPDDA----TLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAI 80 (408)
T ss_dssp CCEEEEESSSEEEHHHHHHHHHHHHHHHHTT-TCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CEEEEEECCEECCHHHHHHHHHHHHHHHHHC-CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 7179999999628999999999999987632-46798459----999999999999999999999849997999999999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 63476554210239899999998611005677678887754445554301454220022233455432111233321000
Q gi|254781158|r 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199 (631)
Q Consensus 120 ~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~ 199 (631)
.+++.+ +.|+...|.++|...|+++..|++.++.++..+++......
T Consensus 81 ~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------- 127 (408)
T 1m5y_A 81 ANIAKQ----NNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVR----------------------------- 127 (408)
T ss_dssp HHHHHH----TTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHH----CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_conf 999987----14237889999997388878888878899999998866532-----------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01234567898899999765666555454433222211000000012578899987555545554332112378875300
Q gi|254781158|r 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279 (631)
Q Consensus 200 ~~~~~~~~~td~el~~yy~~nk~~f~~pe~~~i~yv~~~~~~~~~~~~vt~~ei~~~Y~~~~~~f~~pe~~~~~~i~~~~ 279 (631)
+.+.+++.++..||+.+...+..+....+.++......... ..... ..
T Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~----------------------~~ 175 (408)
T 1m5y_A 128 ----RRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPT------SDQVN----------------------EA 175 (408)
T ss_dssp ----HTCCCCTTHHHHHHHCC-------CCEEEEEEEEECCSSCC------HHHHH----------------------HH
T ss_pred ----HHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCH------HHHHH----------------------HH
T ss_conf ----10146635678999874310133103321111012333101------67899----------------------98
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCC---CCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCCC
Q ss_conf 0014788875303651478877520112---3652453162322675677764202366722567861772112110233
Q gi|254781158|r 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356 (631)
Q Consensus 280 ~~~A~~~~~~l~~g~~F~~la~~~~~~~---~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~~ 356 (631)
...++......+.|.+|++++..++.+. .++..||+..+.++ +.+...++.+ ++|++++|+....|||++++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~F~~~~~~~s~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~l-~~g~i~~~~~~~~~~~~~~~~~~ 253 (408)
T 1m5y_A 176 ESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP-GIFAQALSTA-KKGDIVGPIRSGVGFHILKVNDL 253 (408)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHTGGGTC-CTTCEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHCCCCCCCCHHHCC-HHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 877899999875100499998871236265526863323301100-1678887651-35764454235542799999987
Q ss_pred CCHHHH-HHHHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 301344-554322--333345---67999988888655657765420110012455408532001344411234565432
Q gi|254781158|r 357 KPSFTV-SFQEVK--KDIANQ---MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430 (631)
Q Consensus 357 ~~~~~~-~~~evk--~~I~~~---l~~~~a~~~~~~~~~~i~d~~~~g~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (631)
...... +.+.++ +.+... -....+...+.... .+...++.+|.++|..++....+... |.. .|...
T Consensus 254 ~~~~~~~~~~~v~~~~il~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~F~~~a~~~s~d~~s~~~----gg~-lg~~~ 325 (408)
T 1m5y_A 254 RGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIA---ADIKSGKTTFAAAAKEFSQDPGSANQ----GGD-LGWAT 325 (408)
T ss_dssp CCCCCCCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHH---HHHHTTSSCHHHHHHHHCCCTTTGGG----TTE-EEEEC
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH---HHHHHCCCHHHHHHHHHCCCCCCHHH----CCC-CCCCC
T ss_conf 62100133320203444414877633389999999999---99872632389999982889550420----575-66677
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21111168888753112346776511136974999998023223346678889999999999999999999999
Q gi|254781158|r 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504 (631)
Q Consensus 431 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~evk~~V~~~~~~~k~~~~~~~~a~ 504 (631)
++ ...++....+|+.+. +..+.++....| |.+++|.++.+.. .+++++|+.|...+..+++.+.......
T Consensus 326 ~~-~~~~~~~~ai~~l~~-G~is~pv~t~~G-~hii~v~~~~~~~-~~~~~~~~~i~~~l~~~k~~~~~~~~l~ 395 (408)
T 1m5y_A 326 PD-IFDPAFRDALTRLNK-GQMSAPVHSSFG-WHLIELLDTRNVD-KTDAAQKDRAYRMLMNRKFSEEAASWMQ 395 (408)
T ss_dssp GG-GSCHHHHHHHHTCCT-TCBCCCEECSSC-EEEEEEEEEEECC---------HHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHCCCC-CCCCCCEECCCE-EEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 45-478899999981899-990874783884-8999998740688-8746579999999999999999999999
No 2
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Probab=99.70 E-value=5.5e-15 Score=114.32 Aligned_cols=127 Identities=16% Similarity=0.201 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCC-CCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 433211237887530---------000147888753036-5147887752011----23652453162322675677764
Q gi|254781158|r 264 YFSPEIRTVEQLVFP---------NQKEADEAFQSLKKG-KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSI 329 (631)
Q Consensus 264 f~~pe~~~~~~i~~~---------~~~~A~~~~~~l~~g-~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~ 329 (631)
+..++.+.++||+++ .++.|+.++..+..| ++|+++|+++|.+ ..||++||+.++.|+ |+|.+++
T Consensus 259 ~~~~~~v~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~~s~d~~s~~~gg~lg~~~~~~~~-~~~~~ai 337 (408)
T 1m5y_A 259 NISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFD-PAFRDAL 337 (408)
T ss_dssp CCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSC-HHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCC-HHHHHHH
T ss_conf 133320203444414877633389999999999998726323899999828895504205756667745478-8999999
Q ss_pred HCCCCCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2023667225678617721121102333013445543223333456799998888865565776
Q gi|254781158|r 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393 (631)
Q Consensus 330 f~l~~~G~is~pv~t~~G~~iikv~~~~~~~~~~~~evk~~I~~~l~~~~a~~~~~~~~~~i~d 393 (631)
|++ ++|++|+||+|++||||++|+++++.. .++++++++|+..|..+++.+.+.+..+++.+
T Consensus 338 ~~l-~~G~is~pv~t~~G~hii~v~~~~~~~-~~~~~~~~~i~~~l~~~k~~~~~~~~l~~lr~ 399 (408)
T 1m5y_A 338 TRL-NKGQMSAPVHSSFGWHLIELLDTRNVD-KTDAAQKDRAYRMLMNRKFSEEAASWMQEQRA 399 (408)
T ss_dssp HTC-CTTCBCCCEECSSCEEEEEEEEEEECC---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCC-CCCCCCCCEECCCEEEEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 818-999908747838848999998740688-87465799999999999999999999999984
No 3
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=99.68 E-value=2.8e-18 Score=135.80 Aligned_cols=94 Identities=23% Similarity=0.408 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEE
Q ss_conf 332112378875300001478887530365147887752011----2365245316232267567776420236672256
Q gi|254781158|r 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340 (631)
Q Consensus 265 ~~pe~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~ 340 (631)
++||+++++||+++++++|++++++|++|++|+++|+++|.+ .+||++||+.++.+| ++|++++|. ++|++|+
T Consensus 1 t~Pe~~~~~~I~~~~e~~A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~-~~~~~a~~~--~~G~iS~ 77 (102)
T 2kgj_A 1 TQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIP-DELKNAGLK--EKGQLSG 77 (102)
T ss_dssp CCCCEEEEEEEEESSHHHHHHHHHHHHHTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCC-HHHHTTCCC--STTCEEE
T ss_pred CCCCEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEECEECCCCCC-HHHHHHHHH--CCCCCCC
T ss_conf 9854278777861899999999999886999999999877894411348562336356369-899999983--8998355
Q ss_pred EEEECCCCHHHHHCCCCCHHH
Q ss_conf 786177211211023330134
Q gi|254781158|r 341 VIHGSFGYVIAHVSNIKPSFT 361 (631)
Q Consensus 341 pv~t~~G~~iikv~~~~~~~~ 361 (631)
||+|++|||||||.+++++..
T Consensus 78 pi~t~~G~hIikv~d~r~A~~ 98 (102)
T 2kgj_A 78 VIKSSVGFLIVRLDDIQAAHH 98 (102)
T ss_dssp EEEETTEEEEEEEEEEECSST
T ss_pred CEEECCEEEEEEEEEEECCCC
T ss_conf 589799999999935876554
No 4
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=99.67 E-value=1e-17 Score=132.07 Aligned_cols=87 Identities=22% Similarity=0.300 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC---CCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 1123788753000014788875303651478877520112---3652453162322675677764202366722567861
Q gi|254781158|r 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 (631)
Q Consensus 268 e~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~~---~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t 344 (631)
+++.++||++++++.|++++++|++|.+|+++|+++|.+. .+|++||+.++.++ |+|.+++|+| ++|++|+||+|
T Consensus 2 ~~~~a~HIlv~~e~~A~~i~~~l~~g~~F~~lA~~~S~d~s~~~gG~lg~~~~~~l~-~~f~~~~~~l-~~Gevs~pi~t 79 (92)
T 1jns_A 2 KTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMV-PAFDKVVFSC-PVLEPTGPLHT 79 (92)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSC-HHHHHHHHHS-CTTCCEEEEEE
T ss_pred CEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCC-HHHHHHHHHC-CCCCCCCCEEC
T ss_conf 767899867689999999999988799999999984899621347866435300125-8999999838-99996777781
Q ss_pred CCCCHHHHHCCC
Q ss_conf 772112110233
Q gi|254781158|r 345 SFGYVIAHVSNI 356 (631)
Q Consensus 345 ~~G~~iikv~~~ 356 (631)
++||||+||.++
T Consensus 80 ~~G~HIikv~~r 91 (92)
T 1jns_A 80 QFGYHIIKVLYR 91 (92)
T ss_dssp TTEEEEEEEECC
T ss_pred CCEEEEEEEEEC
T ss_conf 982899999736
No 5
>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo sapiens} SCOP: d.26.1.1 PDB: 1fjd_A
Probab=99.62 E-value=3.6e-17 Score=128.57 Aligned_cols=87 Identities=21% Similarity=0.331 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC--CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEE------
Q ss_conf 12378875300001478887530365147887752011--2365245316232267567776420236672256------
Q gi|254781158|r 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP------ 340 (631)
Q Consensus 269 ~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~--~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~------ 340 (631)
+++++||++.+++.|++++++|++|++|+++|+++|.+ ..||++||+.++.|+ ++|++++|+| ++|++|+
T Consensus 2 ~v~vrHIlv~~~~~a~~i~~~l~~G~~F~~lA~~~S~d~~~~gG~lG~~~~~~l~-~ef~~a~f~l-~~g~is~~~~~~~ 79 (96)
T 1eq3_A 2 AVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMV-GPFQEAAFAL-PVSGMDKPVFTDP 79 (96)
T ss_dssp CEEEEEEEECCCSTHHHHHHHHTTTTSHHHHHHHHCCCTTTCCSEEEEESSCCSS-SHHHHHHHHC-CSCCSSTTTBCSS
T ss_pred CEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCC-HHHHHHHHHC-CCCCCCCCCCCCC
T ss_conf 4789999986889999999998879998999987277711248876554555457-7999999818-8885856666689
Q ss_pred EEEECCCCHHHHHCCCC
Q ss_conf 78617721121102333
Q gi|254781158|r 341 VIHGSFGYVIAHVSNIK 357 (631)
Q Consensus 341 pv~t~~G~~iikv~~~~ 357 (631)
||+|++||||++|.+++
T Consensus 80 pi~T~~G~HIi~v~~kr 96 (96)
T 1eq3_A 80 PVKTKFGYHIIMVEGRK 96 (96)
T ss_dssp CEEETTEEEEEEEEECC
T ss_pred CEECCCEEEEEEEEEEC
T ss_conf 88758868999997689
No 6
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=99.61 E-value=2.7e-16 Score=122.88 Aligned_cols=72 Identities=21% Similarity=0.335 Sum_probs=62.0
Q ss_pred HHHHHHHHHHCCC-CHHHHHHHHHC---CCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 1478887530365-14788775201---12365245316232267567776420236672256786177211211023
Q gi|254781158|r 282 EADEAFQSLKKGK-KFIQLAEEQGK---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 (631)
Q Consensus 282 ~A~~~~~~l~~g~-~F~~la~~~~~---~~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~ 355 (631)
.+++++++|.+|. +|+++|+.+|. ..+||+|||+.++.|+ ++|++++|+| ++|+||+||+|++|||||+++.
T Consensus 102 ~~~~i~~~i~~g~~~F~~lA~~~Sd~~Sa~~GGdLG~~~~~~m~-~~f~~a~~~l-~~GeiS~pv~T~~G~HIIk~tG 177 (177)
T 1yw5_A 102 ILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQ-PPFEEAAFNL-HVGEVSNIIETNSGVHILQRTG 177 (177)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEEECTTSSC-HHHHHHHHTS-CTTCBCCCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHCC-CCCCCCCCEEECCEEEEEEEEC
T ss_conf 99999999984855499999995832200146543325312378-9999999828-9898377578189089999849
No 7
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Probab=99.60 E-value=9.6e-17 Score=125.79 Aligned_cols=92 Identities=20% Similarity=0.293 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHCC-CCHHHHHHHHHCC---CCCCCCCCCC
Q ss_conf 554332112378875300---------------------00147888753036-5147887752011---2365245316
Q gi|254781158|r 262 EKYFSPEIRTVEQLVFPN---------------------QKEADEAFQSLKKG-KKFIQLAEEQGKS---LSDISLGSFS 316 (631)
Q Consensus 262 ~~f~~pe~~~~~~i~~~~---------------------~~~A~~~~~~l~~g-~~F~~la~~~~~~---~~~~~lg~~~ 316 (631)
..+..|++++++||+++. .+.|+.++.++++| .+|+++|+++|.+ ..+|++||+.
T Consensus 7 ~~~~~p~~vr~~HILi~~~~~~~~~~~~~~~~~~~k~eA~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~gG~lg~~~ 86 (123)
T 3i6c_A 7 NGQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFS 86 (123)
T ss_dssp ----CCSEEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEEE
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 67999758999989983688778122100232430999999999999999807440999999957894102499544216
Q ss_pred HHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 232267567776420236672256786177211211023
Q gi|254781158|r 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 (631)
Q Consensus 317 ~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~ 355 (631)
.+.|+ ++|++++|+| ++|+||+||+|++|||||+|++
T Consensus 87 ~~~l~-~ef~~a~~~l-~~G~iS~pi~t~~G~HIi~v~e 123 (123)
T 3i6c_A 87 RGQMQ-KPFEDASFAL-RTGEMSGPVFTDSGIHIILRTE 123 (123)
T ss_dssp TTTSC-HHHHHHHHHS-CTTCBCSCEEETTEEEEEEECC
T ss_pred CCCCC-HHHHHHHHCC-CCCCCCCCEEECCCEEEEEEEC
T ss_conf 88757-1788766338-9998777588089179999839
No 8
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}
Probab=99.55 E-value=6.5e-16 Score=120.36 Aligned_cols=87 Identities=23% Similarity=0.431 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHCC-CCHHHHHHHHHCC----CCCCCCCCCCHHHCCCHHHH
Q ss_conf 211237887530---------------000147888753036-5147887752011----23652453162322675677
Q gi|254781158|r 267 PEIRTVEQLVFP---------------NQKEADEAFQSLKKG-KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLA 326 (631)
Q Consensus 267 pe~~~~~~i~~~---------------~~~~A~~~~~~l~~g-~~F~~la~~~~~~----~~~~~lg~~~~~~~~~~~~~ 326 (631)
.++++++||+++ .++.|++++.+|.+| .+|+++|+++|.+ .+||++||+.++.|+ ++|.
T Consensus 5 ~d~~~~sHILi~~~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~F~~lA~~~S~d~~s~~~gG~lG~~~~~~l~-~~f~ 83 (111)
T 2jzv_A 5 SDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTD-KDFE 83 (111)
T ss_dssp CSEEEEEEEEEEBCSCSSCSSSBCHHHHHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSC-HHHH
T ss_pred CCEEEEEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCH-HHHH
T ss_conf 450268899980688777010047999999999999999829523999999978694101348645776766326-9999
Q ss_pred HHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 76420236672256786177211211023
Q gi|254781158|r 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 (631)
Q Consensus 327 ~a~f~l~~~G~is~pv~t~~G~~iikv~~ 355 (631)
+++|+| ++|+||+||+|++|||||||++
T Consensus 84 ~~~~~l-~~GeiS~pi~t~~G~hIikvee 111 (111)
T 2jzv_A 84 KALFKL-KDGEVSEVVKSSFGYHIIKADK 111 (111)
T ss_dssp HHHHTC-CTTCBCCCEEETTEEEEEEECC
T ss_pred HHHHHC-CCCCCCCCEEECCEEEEEEEEC
T ss_conf 999848-9998288788599889999849
No 9
>2itk_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; PIN1, isomerase, WW domain; HET: D11 NAL PE4; 1.45A {Homo sapiens} SCOP: b.72.1.1 d.26.1.1 PDB: 2q5a_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 1f8a_B* 3kad_A* 3kaf_A* 2zr6_A* 1nmv_A 1pin_A* 2zr4_A* 2zr5_A* 2zqt_A* 2zqs_A* 2zqv_A* 2zqu_A 2f21_A* 1zcn_A* ...
Probab=99.54 E-value=8.7e-16 Score=119.52 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=63.1
Q ss_pred HHHHHHHHHHCC-CCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 147888753036-5147887752011---2365245316232267567776420236672256786177211211023
Q gi|254781158|r 282 EADEAFQSLKKG-KKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 (631)
Q Consensus 282 ~A~~~~~~l~~g-~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~ 355 (631)
.|++++.++.+| .+|++||+++|.+ ..||+|||+.++.|+ ++|++++|+| ++|+||+||+|++|||||++++
T Consensus 92 ~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~gGdlG~~~~~~~~-~~f~~~~~~l-~~Geis~pi~t~~G~HIi~~~d 167 (167)
T 2itk_A 92 LINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQ-KPFEDASFAL-RTGEMSGPVFTDSGIHIILRTE 167 (167)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTTSSC-HHHHHHHHHS-CTTCBCCCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHCC-CCCCCCCCEECCCEEEEEEEEC
T ss_conf 99999999860332799999985745332236845521367577-8999999818-9998378688289079999949
No 10
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1
Probab=99.52 E-value=1.2e-15 Score=118.69 Aligned_cols=73 Identities=18% Similarity=0.338 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHCC-CCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 0147888753036-5147887752011---2365245316232267567776420236672256786177211211023
Q gi|254781158|r 281 KEADEAFQSLKKG-KKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 (631)
Q Consensus 281 ~~A~~~~~~l~~g-~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~ 355 (631)
+.+++++.++.+| .+|+++|+++|.+ .+||++||+.++.++ |+|.+++|.| ++|+||+||+|++|||||||+.
T Consensus 63 ~~~~~i~~~i~~g~~~F~~lA~~~Sd~~sa~~GG~LG~~~~~~l~-~ef~~a~~~l-~~GeiS~pi~t~~G~HIikvtA 139 (139)
T 1j6y_A 63 EQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQ-KPFEEATYAL-KVGDISDIVDTDSGVHIIKRTA 139 (139)
T ss_dssp HHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEECSSSSSC-THHHHHHHHC-CSSSCCSCEEETTEEECCCSCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCC-CHHHHHHHHC-CCCCCCCCEEECCEEEEEEEEC
T ss_conf 999999999980866899999995842101248856236466554-0799999838-9998487678289279999949
No 11
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444}
Probab=99.52 E-value=2.9e-15 Score=116.11 Aligned_cols=92 Identities=17% Similarity=0.262 Sum_probs=77.3
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCC
Q ss_conf 11237887530--------0001478887530365147887752011---236524531623226756777642023667
Q gi|254781158|r 268 EIRTVEQLVFP--------NQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKG 336 (631)
Q Consensus 268 e~~~~~~i~~~--------~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G 336 (631)
++.+++||+++ ..+.|++++.+|++|.+|+++|+++|.+ ..+|++||+..+.|| ++|.+++++| ++|
T Consensus 6 ~e~~l~hI~i~~~~~~~~~~~~~a~~i~~~l~~g~~F~~la~~~S~~~~~~~gG~lGw~~~~~l~-~~f~~~~~~l-k~G 83 (112)
T 3gpk_A 6 EEYRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLP-TELATTAASM-GPG 83 (112)
T ss_dssp CEEEEEEEEEECCGGGHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHHHHHHC-CTT
T ss_pred CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCHHHCC-HHHHHHHHCC-CCC
T ss_conf 47889999982894357999999999999988799999999996800132218867743531269-8999999838-989
Q ss_pred CEEEEEEECCCCHHHHHCCCCCHHH
Q ss_conf 2256786177211211023330134
Q gi|254781158|r 337 DFTPVIHGSFGYVIAHVSNIKPSFT 361 (631)
Q Consensus 337 ~is~pv~t~~G~~iikv~~~~~~~~ 361 (631)
++|+||+++.||||+||.+++++..
T Consensus 84 evs~pI~t~~G~hIikl~dkr~G~~ 108 (112)
T 3gpk_A 84 QLAGPVEIRGGFSILYLIDKREGHH 108 (112)
T ss_dssp CEEEEEEETTEEEEEEEEEEECCSC
T ss_pred CCCCCEEECCEEEEEEEEEEECCCC
T ss_conf 8375479899999999965877746
No 12
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=99.51 E-value=4e-15 Score=115.23 Aligned_cols=77 Identities=22% Similarity=0.349 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHCC
Q ss_conf 0001478887530365147887752011---2365245316232267567776420236672256786177211211023
Q gi|254781158|r 279 NQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355 (631)
Q Consensus 279 ~~~~A~~~~~~l~~g~~F~~la~~~~~~---~~~~~lg~~~~~~~~~~~~~~a~f~l~~~G~is~pv~t~~G~~iikv~~ 355 (631)
.++.|++++.++++|.+|+++|+++|.+ ..||++||+..+.+| ++|.+++|+| ++|++|+||+|++||||++|.+
T Consensus 24 ~~~~a~~~~~~l~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~-~~~~~~~~~l-~~G~iS~pi~t~~G~hIi~l~~ 101 (103)
T 2pv1_A 24 AESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP-GIFAQALSTA-KKGDIVGPIRSGVGFHILKVND 101 (103)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSC-HHHHHHTTTC-CTTCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHC-CCCCCCCCEEECCEEEEEEEEE
T ss_conf 9999999999988799999999996769532148956411688778-6899999754-7998787489899999999976
Q ss_pred CC
Q ss_conf 33
Q gi|254781158|r 356 IK 357 (631)
Q Consensus 356 ~~ 357 (631)
++
T Consensus 102 ~R 103 (103)
T 2pv1_A 102 LR 103 (103)
T ss_dssp EC
T ss_pred EC
T ss_conf 79
No 13
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=99.50 E-value=2.4e-15 Score=116.67 Aligned_cols=87 Identities=26% Similarity=0.429 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC---CCCCCCCCCH-HHCCCHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 1123788753000014788875303651478877520112---3652453162-32267567776420236672256786
Q gi|254781158|r 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSK-EYIPDVSLADSIFSLAKKGDFTPVIH 343 (631)
Q Consensus 268 e~~~~~~i~~~~~~~A~~~~~~l~~g~~F~~la~~~~~~~---~~~~lg~~~~-~~~~~~~~~~a~f~l~~~G~is~pv~ 343 (631)
.+++++||++++++.|++++.+|++|.+|+++|+++|.+. .+|.+||+.+ +.+| ++|.+++|++ ++|++|+|++
T Consensus 3 ~~v~v~hIl~~~~~~A~~i~~~l~~g~~F~~lA~~~S~d~~~~~~G~l~~~~~~~~~~-~~~~~~~~~l-~~G~vs~Pi~ 80 (93)
T 1zk6_A 3 GKIRASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMD-ETFSKAAFKL-KTGEVSDPVK 80 (93)
T ss_dssp CCEEEEEEEESSHHHHHHHHHHHHHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSC-TTHHHHHHHS-CTTCBCCCEE
T ss_pred CEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHC-CCCCCCCCEE
T ss_conf 7599999997899999999999887999999999967795322167756544578619-8999999857-9998277689
Q ss_pred ECCCCHHHHHCCC
Q ss_conf 1772112110233
Q gi|254781158|r 344 GSFGYVIAHVSNI 356 (631)
Q Consensus 344 t~~G~~iikv~~~ 356 (631)
|++||||+||.+.
T Consensus 81 s~~G~hIlkv~dk 93 (93)
T 1zk6_A 81 TQYGYHIIKKTEE 93 (93)
T ss_dssp CSSCEEEEEEEEC
T ss_pred ECCEEEEEEEECC
T ss_conf 6998899999478
No 14
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444}
Probab=96.80 E-value=0.0055 Score=35.91 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCEEECC--CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf 99999999998369997898986398144025--6222655423579899999861688872034516995699999705
Q gi|254781158|r 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTN--QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 (631)
Q Consensus 501 ~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~--~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~ 578 (631)
.+|+++..++ +.|.+|+.+++.+...-.... .+.+. ....+++++...+|++++|+++. |...+.+|.|++|.+
T Consensus 27 ~~a~~i~~~l-~~g~~F~~la~~~S~~~~~~~gG~lGw~--~~~~l~~~f~~~~~~lk~Gevs~-pI~t~~G~hIikl~d 102 (112)
T 3gpk_A 27 ANAEKIVEQL-KQGGSFVAYARQYSEASTAAVGGDLGWI--RLAQLPTELATTAASMGPGQLAG-PVEIRGGFSILYLID 102 (112)
T ss_dssp HHHHHHHHHH-HTTCCHHHHHHHHCCSTTGGGTTEEEEE--CGGGSCHHHHHHHHHCCTTCEEE-EEEETTEEEEEEEEE
T ss_pred HHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHCCCCCCCC--CHHHCCHHHHHHHHCCCCCCCCC-CEEECCEEEEEEEEE
T ss_conf 9999999998-8799999999996800132218867743--53126989999998389898375-479899999999965
Q ss_pred CCCC
Q ss_conf 8788
Q gi|254781158|r 579 SKVG 582 (631)
Q Consensus 579 ~~~~ 582 (631)
...+
T Consensus 103 kr~G 106 (112)
T 3gpk_A 103 KREG 106 (112)
T ss_dssp EECC
T ss_pred EECC
T ss_conf 8777
No 15
>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A
Probab=96.58 E-value=0.011 Score=33.96 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf 99999999999983699978989863981440256222655423579899999861688872034516995699999705
Q gi|254781158|r 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 (631)
Q Consensus 499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~ 578 (631)
+...+.++...+ +.|.+|+++++.+...-.....-.........+++++...+|++++|+++ .|...+.+|.|++|.+
T Consensus 24 ~~~~a~~~~~~l-~~g~~F~~la~~~S~d~~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~iS-~pi~t~~G~hIi~l~~ 101 (103)
T 2pv1_A 24 AESQARAIVDQA-RNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIV-GPIRSGVGFHILKVND 101 (103)
T ss_dssp HHHHHHHHHHHH-HTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHTTTCCTTCEE-EEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEEE
T ss_conf 999999999998-87999999999967695321489564116887786899999754799878-7489899999999976
Q ss_pred C
Q ss_conf 8
Q gi|254781158|r 579 S 579 (631)
Q Consensus 579 ~ 579 (631)
+
T Consensus 102 ~ 102 (103)
T 2pv1_A 102 L 102 (103)
T ss_dssp E
T ss_pred E
T ss_conf 7
No 16
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Probab=96.34 E-value=0.016 Score=32.86 Aligned_cols=31 Identities=10% Similarity=-0.058 Sum_probs=13.9
Q ss_pred HHHHHHHHHCCCCCCCCCCEECCCCEEEEEEEE
Q ss_conf 688887531123467765111369749999980
Q gi|254781158|r 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469 (631)
Q Consensus 437 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~ 469 (631)
.++...+|+... +..+.++....| |.+++|.
T Consensus 92 ~ef~~a~~~l~~-G~iS~pi~t~~G-~HIi~v~ 122 (123)
T 3i6c_A 92 KPFEDASFALRT-GEMSGPVFTDSG-IHIILRT 122 (123)
T ss_dssp HHHHHHHHHSCT-TCBCSCEEETTE-EEEEEEC
T ss_pred HHHHHHHHCCCC-CCCCCCEEECCC-EEEEEEE
T ss_conf 178876633899-987775880891-7999983
No 17
>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}
Probab=96.03 E-value=0.021 Score=32.06 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEC---CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEE
Q ss_conf 999999999999836999789898639814402---56222655423579899999861688872034516995699999
Q gi|254781158|r 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT---NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575 (631)
Q Consensus 499 ~~~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~~---~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~ 575 (631)
++.++.++...+.+.+.+|+++|+.+.....+. +.+.+.. .+.+++++...+|++++|+++ .|.....+|.|++
T Consensus 32 a~~~a~~i~~~l~~~~~~F~~lA~~~S~d~~s~~~gG~lG~~~--~~~l~~~f~~~~~~l~~GeiS-~pi~t~~G~hIik 108 (111)
T 2jzv_A 32 AKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVL--KGQTDKDFEKALFKLKDGEVS-EVVKSSFGYHIIK 108 (111)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEE--TTSSCHHHHHHHHTCCTTCBC-CCEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHCCCCCCC-CCEEECCEEEEEE
T ss_conf 9999999999998295239999999786941013486457767--663269999999848999828-8788599889999
Q ss_pred ECC
Q ss_conf 705
Q gi|254781158|r 576 VTN 578 (631)
Q Consensus 576 v~~ 578 (631)
|++
T Consensus 109 vee 111 (111)
T 2jzv_A 109 ADK 111 (111)
T ss_dssp ECC
T ss_pred EEC
T ss_conf 849
No 18
>2itk_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; PIN1, isomerase, WW domain; HET: D11 NAL PE4; 1.45A {Homo sapiens} SCOP: b.72.1.1 d.26.1.1 PDB: 2q5a_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 1f8a_B* 3kad_A* 3kaf_A* 2zr6_A* 1nmv_A 1pin_A* 2zr4_A* 2zr5_A* 2zqt_A* 2zqs_A* 2zqv_A* 2zqu_A 2f21_A* 1zcn_A* ...
Probab=95.94 E-value=0.037 Score=30.52 Aligned_cols=74 Identities=7% Similarity=0.053 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCEE--ECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
Q ss_conf 99999999998369997898986398144--025622265542357989999986168887203451699569999970
Q gi|254781158|r 501 SKANQLVLEYSKEGKNFRDIGKNLGASLL--TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 (631)
Q Consensus 501 ~~a~~~~~~~~~~g~~l~~~a~~~~~~~~--~~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~ 577 (631)
+.++++...+...+.+|..+|+.+.-.-. .-+.+.+. ..+.+++++-.++|+++.|+++. +.....+|-|++++
T Consensus 91 ~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~gGdlG~~--~~~~~~~~f~~~~~~l~~Geis~-pi~t~~G~HIi~~~ 166 (167)
T 2itk_A 91 ELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAF--SRGQMQKPFEDASFALRTGEMSG-PVFTDSGIHIILRT 166 (167)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEE--CTTSSCHHHHHHHHHSCTTCBCC-CEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHCCCCCCCCC-CEECCCEEEEEEEE
T ss_conf 999999999860332799999985745332236845521--36757789999998189998378-68828907999994
No 19
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=95.92 E-value=0.022 Score=31.92 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCEEEC--CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECCC
Q ss_conf 99999999836999789898639814402--562226554235798999998616888720345169956999997058
Q gi|254781158|r 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTT--NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579 (631)
Q Consensus 503 a~~~~~~~~~~g~~l~~~a~~~~~~~~~~--~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~~ 579 (631)
|.++...+ +.|.+|+.+|+.+...-... +.+.+. ..+.+++++...+|++++|+++ .|.....+|.|++|.+.
T Consensus 17 A~~i~~~l-~~g~~F~~lA~~~S~d~s~~~gG~lg~~--~~~~l~~~f~~~~~~l~~Gevs-~pi~t~~G~HIikv~~r 91 (92)
T 1jns_A 17 ALDLLEQI-KNGADFGKLAKKHSICPSGKRGGDLGEF--RQGQMVPAFDKVVFSCPVLEPT-GPLHTQFGYHIIKVLYR 91 (92)
T ss_dssp HHHHHHHH-HHTCCHHHHHHHHHCSTTTTTGGGCCEE--ETTSSCHHHHHHHHHSCTTCCE-EEEEETTEEEEEEEECC
T ss_pred HHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCEE--CCCCCCHHHHHHHHHCCCCCCC-CCEECCCEEEEEEEEEC
T ss_conf 99999998-8799999999984899621347866435--3001258999999838999967-77781982899999736
No 20
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=95.82 E-value=0.019 Score=32.35 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCEEECCC--CCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEECC
Q ss_conf 9999999983699978989863981440256--222655423579899999861688872034516995699999705
Q gi|254781158|r 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ--INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578 (631)
Q Consensus 503 a~~~~~~~~~~g~~l~~~a~~~~~~~~~~~~--i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~~ 578 (631)
|+++...+ ++|.+|+++|+.+...-....+ +.+.. ....+++++...+|++++|+++ .|...+.+|.|++|.+
T Consensus 18 A~~i~~~l-~~g~~F~~lA~~~S~d~~~~~~G~l~~~~-~~~~~~~~~~~~~~~l~~G~vs-~Pi~s~~G~hIlkv~d 92 (93)
T 1zk6_A 18 AEEVEKKL-KKGEKFEDLAKEYSTDSSASKGGDLGWFA-KEGQMDETFSKAAFKLKTGEVS-DPVKTQYGYHIIKKTE 92 (93)
T ss_dssp HHHHHHHH-HHTCCHHHHHHHHCCSGGGGGTTEEEEEC-TTTSSCTTHHHHHHHSCTTCBC-CCEECSSCEEEEEEEE
T ss_pred HHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHCCCCCCC-CCEEECCEEEEEEEEC
T ss_conf 99999998-87999999999967795322167756544-5786198999999857999827-7689699889999947
No 21
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=95.76 E-value=0.051 Score=29.59 Aligned_cols=71 Identities=8% Similarity=-0.032 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCCCEEEC--CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
Q ss_conf 9999999836999789898639814402--5622265542357989999986168887203451699569999970
Q gi|254781158|r 504 NQLVLEYSKEGKNFRDIGKNLGASLLTT--NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 (631)
Q Consensus 504 ~~~~~~~~~~g~~l~~~a~~~~~~~~~~--~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~ 577 (631)
+++...+...+.+|..+|+.+.-..... +.+.+ ...+.+++++-.++|++++|+++ .|+....+|-|++++
T Consensus 104 ~~i~~~i~~g~~~F~~lA~~~Sd~~Sa~~GGdLG~--~~~~~m~~~f~~a~~~l~~GeiS-~pv~T~~G~HIIk~t 176 (177)
T 1yw5_A 104 KKHLERILSGEVKLSELANTESDCSSHDRGGDLGF--FSKGQMQPPFEEAAFNLHVGEVS-NIIETNSGVHILQRT 176 (177)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEE--ECTTSSCHHHHHHHHTSCTTCBC-CCEEETTEEEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHCCCCCCCC-CCEEECCEEEEEEEE
T ss_conf 99999998485549999999583220014654332--53123789999999828989837-757818908999984
No 22
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1
Probab=95.47 E-value=0.014 Score=33.22 Aligned_cols=74 Identities=7% Similarity=0.058 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCEEE--CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEC
Q ss_conf 999999999983699978989863981440--25622265542357989999986168887203451699569999970
Q gi|254781158|r 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLT--TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577 (631)
Q Consensus 501 ~~a~~~~~~~~~~g~~l~~~a~~~~~~~~~--~~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~~~~~~~~~~~v~~v~ 577 (631)
++++++...+.+.+.+|+++|+.+.-.... -+.+.+.. ...+++++...+|++++|++. .|.....+|.|++|+
T Consensus 63 ~~~~~i~~~i~~g~~~F~~lA~~~Sd~~sa~~GG~LG~~~--~~~l~~ef~~a~~~l~~GeiS-~pi~t~~G~HIikvt 138 (139)
T 1j6y_A 63 EQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFG--RGQMQKPFEEATYALKVGDIS-DIVDTDSGVHIIKRT 138 (139)
T ss_dssp HHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEECS--SSSSCTHHHHHHHHCCSSSCC-SCEEETTEEECCCSC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEC--CCCCCCHHHHHHHHCCCCCCC-CCEEECCEEEEEEEE
T ss_conf 9999999999808668999999958421012488562364--665540799999838999848-767828927999994
No 23
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=95.19 E-value=0.13 Score=27.02 Aligned_cols=72 Identities=14% Similarity=0.098 Sum_probs=33.1
Q ss_pred HHHHHHHCCCCCCCEEEE-EEECCCCHHH--HHCCCCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 677764202366722567-8617721121--10233301---------------34455432233334567999988888
Q gi|254781158|r 324 SLADSIFSLAKKGDFTPV-IHGSFGYVIA--HVSNIKPS---------------FTVSFQEVKKDIANQMRITKASEKVK 385 (631)
Q Consensus 324 ~~~~a~f~l~~~G~is~p-v~t~~G~~ii--kv~~~~~~---------------~~~~~~evk~~I~~~l~~~~a~~~~~ 385 (631)
+|.+.+-++ +.|+.... +.-...-..| +|.+++.. ...++++.|+.|+..|..+.......
T Consensus 191 ~f~e~liG~-k~Ge~~~~~~~~agk~~~f~v~I~~Ik~~~~Pel~Defak~~~~~~~t~~elk~~ik~~l~~~~~~~~~~ 269 (433)
T 3gty_X 191 PFVKDLVGK-KKGDVVEIEREYEGKKYTYKLEVEEVYKRTLPEIGDELAKSVNNEFETLEQLKESLKKEGKEIYDVEMKE 269 (433)
T ss_dssp TTHHHHTTC-CTTCEEEEEEEETTEEEEEEEEEEEEEEECCCCSSHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-CCCCEEECCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 136663266-6784232133468973689999986430368865489997415321206789999878899999998788
Q ss_pred HHHHHHHHHHH
Q ss_conf 65565776542
Q gi|254781158|r 386 EDYKRLEEFLA 396 (631)
Q Consensus 386 ~~~~~i~d~~~ 396 (631)
...+.+.+.+.
T Consensus 270 ~~~~~i~~~L~ 280 (433)
T 3gty_X 270 SMREQLLEKLP 280 (433)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
T ss_conf 89999999998
No 24
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=95.01 E-value=0.14 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=16.5
Q ss_pred ECCHHHHHHHHHHHHHHHHHHC
Q ss_conf 8489999999999999999870
Q gi|254781158|r 50 KVPFSSFINSWKQELGMISQKI 71 (631)
Q Consensus 50 ~I~~~~f~~~~~~~~~~~~~~~ 71 (631)
.|+..++...++..+..++.+.
T Consensus 18 ~v~~~~~~~~~~~~~~~~~k~~ 39 (432)
T 1w26_A 18 TIAADSIETAVKSELVNVAKKV 39 (432)
T ss_dssp EECHHHHHHHHHHHHHHHHHHT
T ss_pred EECHHHHHHHHHHHHHHHHCCC
T ss_conf 9989999999999999986618
No 25
>2nsa_A Trigger factor, TF; chaperone; 1.70A {Thermotoga maritima}
Probab=93.91 E-value=0.25 Score=25.09 Aligned_cols=100 Identities=6% Similarity=0.039 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999998498248899999996347-6554210239899999998611005677678887754445554301
Q gi|254781158|r 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSP-LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169 (631)
Q Consensus 91 ~~li~~~ll~~~a~~~gi~vsd~~v~~~i~~~p-~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~ 169 (631)
+..+.+.++...++..-+.+|+..|...+...- .+. ..+. ...+...|.+++.|.+.++...........+.
T Consensus 26 ~~~~~~~i~~~L~e~~~~~lPe~lv~~e~~~~~~~~~-~~~~------~~~~~~~~~~~e~~~~~~~~~A~~~vk~~lil 98 (170)
T 2nsa_A 26 KESMREQLLEKLPEIVEIEISDRTLEILVNEAINRLK-REGR------YEQIVSSYESEEKFREELKERILDDIKRDRVI 98 (170)
T ss_dssp HHHHHHHHHHHGGGGCCCCCCHHHHHHHHHHHHHHHH-HHTC------HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHH------HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999768899989999999999999999-9887------55444343578988888999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 45422002223345543211123332100001234567898899999765666555
Q gi|254781158|r 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225 (631)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~~~~~~~~~td~el~~yy~~nk~~f~ 225 (631)
..+ . -...+.||++++.+++..-...|.
T Consensus 99 ~~I----------a------------------~~e~I~vseeei~~~i~~~a~~~~ 126 (170)
T 2nsa_A 99 EVL----------A------------------QEKGISVNDEELEKEAEELAPFWG 126 (170)
T ss_dssp HHH----------H------------------HHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred HHH----------H------------------HHCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999----------9------------------983899999999999999998869
No 26
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}
Probab=93.49 E-value=0.089 Score=27.98 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=10.4
Q ss_pred CCCCCCEECCCCEEEEEEEECCCCCC
Q ss_conf 67765111369749999980232233
Q gi|254781158|r 450 LSKDHTVALPDGSYMWVQIKESIPAR 475 (631)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~v~~~~~~~ 475 (631)
+..+.++..+.| |.+++|+++.++.
T Consensus 73 G~iS~pi~t~~G-~hIikv~d~r~A~ 97 (102)
T 2kgj_A 73 GQLSGVIKSSVG-FLIVRLDDIQAAH 97 (102)
T ss_dssp TCEEEEEEETTE-EEEEEEEEEECSS
T ss_pred CCCCCCEEECCE-EEEEEEEEEECCC
T ss_conf 983555897999-9999993587655
No 27
>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo sapiens} SCOP: d.26.1.1 PDB: 1fjd_A
Probab=92.74 E-value=0.19 Score=25.90 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCCCEEEC-CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEE-----EECCCCCEEEEEEEC
Q ss_conf 9999999836999789898639814402-5622265542357989999986168887203-----451699569999970
Q gi|254781158|r 504 NQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKC-----FPIENGLSYVVFKVT 577 (631)
Q Consensus 504 ~~~~~~~~~~g~~l~~~a~~~~~~~~~~-~~i~r~~~~~~~~~~~~~~~iF~~~~g~~~~-----~~~~~~~~~~v~~v~ 577 (631)
.++...+ ++|.+|+++|+.+....... +.+.+.. .+.+++++-.++|+++.|++.. .|.....+|-|++|.
T Consensus 17 ~~i~~~l-~~G~~F~~lA~~~S~d~~~~gG~lG~~~--~~~l~~ef~~a~f~l~~g~is~~~~~~~pi~T~~G~HIi~v~ 93 (96)
T 1eq3_A 17 MEAMEKL-KSGMRFNEVAAQYSEDKARQGGDLGWMT--RGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVE 93 (96)
T ss_dssp HHHHHHH-TTTTSHHHHHHHHCCCTTTCCSEEEEES--SCCSSSHHHHHHHHCCSCCSSTTTBCSSCEEETTEEEEEEEE
T ss_pred HHHHHHH-HCCCCHHHHHHHCCCCCCCCCCCCCEEC--CCCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCEEEEEEEE
T ss_conf 9999998-8799989999872777112488765545--554577999999818888585666668988758868999997
Q ss_pred CC
Q ss_conf 58
Q gi|254781158|r 578 NS 579 (631)
Q Consensus 578 ~~ 579 (631)
+.
T Consensus 94 ~k 95 (96)
T 1eq3_A 94 GR 95 (96)
T ss_dssp EC
T ss_pred EE
T ss_conf 68
No 28
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae}
Probab=89.29 E-value=0.8 Score=21.75 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=39.4
Q ss_pred CEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 42899998784899999999999999998708899978998601389999999999999999998498248899999996
Q gi|254781158|r 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 (631)
Q Consensus 41 ~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~ 120 (631)
..+..++.......-.. .....++..+-.. .+......+.+.++..-+.+.++....+...+.+++..|.+.+.
T Consensus 43 ~elpelddeFak~~~~~----~~~e~l~~~lk~~--ie~~l~~e~~~~~i~~~~k~~ild~L~e~~~~diPe~mV~~e~~ 116 (218)
T 1zxj_A 43 DEVIEVERIFADPAFIE----QHRQRILASFKDA--KESALYHELTHIVIKDNLFSCAMNAIVGYFEFNIDEAELKNVME 116 (218)
T ss_dssp TSCEEECCSCCCHHHHH----HHHHHHHTTCTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEEECCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHCCHH----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 66688898988763437----6799999999999--99999999999999999999999999975777899999999999
Q ss_pred HH
Q ss_conf 34
Q gi|254781158|r 121 RS 122 (631)
Q Consensus 121 ~~ 122 (631)
++
T Consensus 117 ~l 118 (218)
T 1zxj_A 117 GL 118 (218)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 29
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=84.61 E-value=1.5 Score=20.06 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=18.3
Q ss_pred EECCHHHHHHHHHHHHHHHHHHC
Q ss_conf 78489999999999999999870
Q gi|254781158|r 49 QKVPFSSFINSWKQELGMISQKI 71 (631)
Q Consensus 49 ~~I~~~~f~~~~~~~~~~~~~~~ 71 (631)
-.|+..++...++..+..++.+.
T Consensus 20 v~v~~~~~~~~~~~~~~~~~k~~ 42 (392)
T 1t11_A 20 ITVPAANIEDAVAAELRNIAKNR 42 (392)
T ss_dssp EEECHHHHHHHHHHHHHHHHTTC
T ss_pred EEECHHHHHHHHHHHHHHHHHHC
T ss_conf 99879999999999999997038
No 30
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=53.97 E-value=7.4 Score=15.43 Aligned_cols=18 Identities=33% Similarity=0.268 Sum_probs=8.0
Q ss_pred HCCCCHHHHHHHHHHHHH
Q ss_conf 102398999999986110
Q gi|254781158|r 129 DNKFSHDVFVSRLAREGI 146 (631)
Q Consensus 129 ~G~Fd~~~~~~~L~~~g~ 146 (631)
+|..+...+...|+..|+
T Consensus 19 dG~I~~~el~~~l~~lg~ 36 (145)
T 2bl0_B 19 DGKVSIEELGSALRSLGK 36 (145)
T ss_dssp SSCEEGGGHHHHHHHTTC
T ss_pred CCEECHHHHHHHHHHHCC
T ss_conf 982969999999999578
No 31
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=49.56 E-value=8.7 Score=14.98 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=8.3
Q ss_pred HHCCCCHHHHHHHHHHHHH
Q ss_conf 2102398999999986110
Q gi|254781158|r 128 KDNKFSHDVFVSRLAREGI 146 (631)
Q Consensus 128 ~~G~Fd~~~~~~~L~~~g~ 146 (631)
.+|..+...+...|+..|+
T Consensus 24 ~dG~I~~~el~~~L~~lG~ 42 (159)
T 2ovk_C 24 RDGDVDAAKVGDLLRCLGM 42 (159)
T ss_dssp SSSEEEGGGHHHHHHHTTC
T ss_pred CCCEECHHHHHHHHHHCCC
T ss_conf 8983989999999998699
No 32
>2ggm_A Centrin-2; EF-hand superfamily, DNA repair complex, cell cycle; 2.35A {Homo sapiens} SCOP: a.39.1.5 PDB: 1zmz_A 2ami_A
Probab=45.19 E-value=10 Score=14.55 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=13.9
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 8498248899999996347655421023989999999
Q gi|254781158|r 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 (631)
Q Consensus 105 ~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L 141 (631)
.+|+.++++++...+.... .+.+|..+-..|...+
T Consensus 59 ~~~~~~~~~~~~~~~~~~d--~~~~g~i~~~eF~~~~ 93 (172)
T 2ggm_A 59 ALGFEPKKEEIKKMISEID--KEGTGKMNFGDFLTVM 93 (172)
T ss_dssp HTTCCCCHHHHHHHHHHHT--TTCCSEEEHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHCC--CCCCCEEEEHHHHHHH
T ss_conf 8177676899999998414--6789856317899999
No 33
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=44.61 E-value=9.2 Score=14.82 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=8.3
Q ss_pred HHCCCCCCHHHHHHHHH
Q ss_conf 98498248899999996
Q gi|254781158|r 104 EDIGLEADHGRVWGEIA 120 (631)
Q Consensus 104 ~~~gi~vsd~~v~~~i~ 120 (631)
..+|+.+|++++...+.
T Consensus 31 ~~lg~~~s~~~~~~~~~ 47 (148)
T 1m45_A 31 RAIGYNPTNQLVQDIIN 47 (148)
T ss_dssp HHTTCCCCHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHH
T ss_conf 99179999999976650
No 34
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2otg_C* 2os8_C* 1scm_C
Probab=44.61 E-value=10 Score=14.49 Aligned_cols=35 Identities=9% Similarity=0.221 Sum_probs=15.1
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 98498248899999996347655421023989999999
Q gi|254781158|r 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 (631)
Q Consensus 104 ~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L 141 (631)
+.+|+.+|++++...+.. +.+.+|..+-..|...+
T Consensus 38 ~~lG~~~t~~ei~~~~~~---~~~~~g~i~~~eF~~~~ 72 (156)
T 1wdc_C 38 RCLGINPRNEDVFAVGGT---HKMGEKSLPFEEFLPAY 72 (156)
T ss_dssp HHTTCCCCHHHHHHTTCC---SSTTSCEECHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHH---CCCCCCCCCHHHHHHHH
T ss_conf 985999979999888622---32689966499998775
No 35
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=39.99 E-value=12 Score=14.03 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=8.2
Q ss_pred HHCCCCCCHHHHHHHH
Q ss_conf 9849824889999999
Q gi|254781158|r 104 EDIGLEADHGRVWGEI 119 (631)
Q Consensus 104 ~~~gi~vsd~~v~~~i 119 (631)
..+|+.+++.++...+
T Consensus 84 ~~lg~~~t~~el~~~~ 99 (196)
T 3dtp_E 84 DSLGRLCTEQELDSMV 99 (196)
T ss_dssp HTTSCCCCHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHH
T ss_conf 9818997388999998
No 36
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=39.72 E-value=12 Score=14.01 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999849824889999999634765542102398999999986
Q gi|254781158|r 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631)
Q Consensus 98 ll~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631)
-|......+|+.++++++...+..... +.+|..|-.-|.+++..
T Consensus 30 el~~~l~~~g~~~t~~e~~~l~~~~D~--d~~G~I~~~eF~~~~~s 73 (92)
T 2kn2_A 30 ELRHVMINLGEKLTDEEVEQMIKEADL--DGDGQVNYEEFVKMMMT 73 (92)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHCS--SCCSSEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCC--CCCCCEEHHHHHHHHHH
T ss_conf 999999982999999999999998098--99995939999999997
No 37
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=35.95 E-value=5.7 Score=16.20 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23788753000014788875303
Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
+.+..+.|.+.++|+.+...++.
T Consensus 40 kg~afV~f~~~~~A~~Ai~~l~g 62 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQ 62 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHHCC
T ss_conf 85599998799999999998688
No 38
>1lkj_A Calmodulin, CAM; yeast calmodulin, EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5
Probab=33.36 E-value=15 Score=13.36 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=13.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHH
Q ss_conf 210239899999998611005
Q gi|254781158|r 128 KDNKFSHDVFVSRLAREGINE 148 (631)
Q Consensus 128 ~~G~Fd~~~~~~~L~~~g~t~ 148 (631)
.+|..+...|..++...|+.+
T Consensus 23 ~~G~i~~~e~~~~l~~~~~~~ 43 (146)
T 1lkj_A 23 NNGSISSSELATVMRSLGLSP 43 (146)
T ss_dssp SSSEEEHHHHHHHHHHHTCCC
T ss_pred CCCCCCHHHHHHHHHHCCCCC
T ss_conf 999493899999998708863
No 39
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=31.39 E-value=17 Score=13.15 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999999998498-248899999996347655421023989999999861
Q gi|254781158|r 93 LVSGATLDQFIEDIGL-EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 (631)
Q Consensus 93 li~~~ll~~~a~~~gi-~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~ 144 (631)
.|.-.-|.+.+..+|. .+|++++.+.|... =.+.+|+.+.+.|..++.+.
T Consensus 56 ~It~~eLk~v~~~lG~e~ls~eEl~~mi~e~--D~d~dG~I~~~EF~~~M~r~ 106 (135)
T 3h4s_E 56 LITAESLRRNSGILGIEGMSKEDAQGMVREG--DLDGDGALNQTEFCVLMVRL 106 (135)
T ss_dssp BBCHHHHHHHGGGGTCCCCCHHHHHHHHHHH--CSSCSSSBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH--CCCCCCCEEHHHHHHHHHHC
T ss_conf 7599999999987386757699999999986--86989969099999999875
No 40
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structure initiative; 1.70A {Plasmodium falciparum 3D7} PDB: 2auc_A
Probab=30.31 E-value=17 Score=13.03 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=14.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2102398999999986110056
Q gi|254781158|r 128 KDNKFSHDVFVSRLAREGINEK 149 (631)
Q Consensus 128 ~~G~Fd~~~~~~~L~~~g~t~~ 149 (631)
.+|..+.+.+...|+..|++|.
T Consensus 28 ~~G~I~~~el~~~l~~lG~~ps 49 (146)
T 2qac_A 28 SGGKISIDNASYNARKLGLAPS 49 (146)
T ss_dssp BTTBEEHHHHHHHHHHTTCCCC
T ss_pred CCCCCCHHHHHHHHHHHCCCCH
T ss_conf 9895959999999999089805
No 41
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.02 E-value=10 Score=14.60 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23788753000014788875303
Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
+.+..+.|.+.++|+.+...++.
T Consensus 63 k~~aFV~f~~~~~A~~A~~~lng 85 (114)
T 2cq2_A 63 KPYSFARYRTTEESKRAYVTLNG 85 (114)
T ss_dssp CSCEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEEECCHHHHHHHHHHHCC
T ss_conf 98899998899999999998389
No 42
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide complex, cell cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=29.97 E-value=18 Score=13.00 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=5.4
Q ss_pred HCCCCCCHHHHHHH
Q ss_conf 84982488999999
Q gi|254781158|r 105 DIGLEADHGRVWGE 118 (631)
Q Consensus 105 ~~gi~vsd~~v~~~ 118 (631)
.+|+.+++..+...
T Consensus 34 ~~~~~~~~~~~~~~ 47 (143)
T 2obh_A 34 ALGFEPKKEEIKKM 47 (143)
T ss_dssp HTTCCCCHHHHHHH
T ss_pred HCCCCCCHHHHHHH
T ss_conf 80865427888887
No 43
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=29.93 E-value=7.8 Score=15.30 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 123788753000014788875303
Q gi|254781158|r 269 IRTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 269 ~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
.+....+.|.+.++|..+...++.
T Consensus 42 ~~g~afV~f~~~~~A~~A~~~lng 65 (89)
T 2wbr_A 42 NQGIALCKYTTREEANKAQMALNN 65 (89)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 997899998999999999998688
No 44
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=29.45 E-value=18 Score=12.94 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=9.9
Q ss_pred HHCCCCCCHHHHHHHHHHH
Q ss_conf 9849824889999999634
Q gi|254781158|r 104 EDIGLEADHGRVWGEIARS 122 (631)
Q Consensus 104 ~~~gi~vsd~~v~~~i~~~ 122 (631)
+.+|+.++..++...+...
T Consensus 35 ~~lg~~~~~~e~~~~~~~~ 53 (149)
T 2mys_C 35 RALGQNPTNAEINKILGNP 53 (149)
T ss_pred HHCCCCCCHHHHHHHHHHH
T ss_conf 9748999989998899886
No 45
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=28.63 E-value=18 Score=12.85 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=24.2
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999984982488999999963476554210239899999998
Q gi|254781158|r 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142 (631)
Q Consensus 101 ~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~ 142 (631)
.....+|..+++.++...+...- .+.+|..|-+.|..++.
T Consensus 30 ~~l~~lg~~~s~~e~~~~~~~~D--~d~dg~I~~~eF~~~m~ 69 (71)
T 2b1u_A 30 RAMAGLGQPLPQEELDAMIREAD--VDQDGRVNYEEFARMLA 69 (71)
T ss_dssp HHGGGTTCSSCHHHHHHHHHHCC--SSSSSEEETTHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHC--CCCCCCEEHHHHHHHHC
T ss_conf 99999489999999999999868--99899590999999981
No 46
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=28.59 E-value=19 Score=12.85 Aligned_cols=37 Identities=5% Similarity=0.093 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 24889999999634765542102398999999986110056
Q gi|254781158|r 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149 (631)
Q Consensus 109 ~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~ 149 (631)
.+|+++|...+... ..+|.|+...|...+...+.++.
T Consensus 5 ~~s~~di~~~~~~~----~~~gsi~~~~F~~~~~~~~~~~~ 41 (108)
T 1rro_A 5 ILSAEDIAAALQEC----QDPDTFEPQKFFQTSGLSKMSAS 41 (108)
T ss_dssp TSCHHHHHHHHHHT----CSTTCCCHHHHHHHHSGGGSCHH
T ss_pred HCCHHHHHHHHHHC----CCCCCCCHHHHHHHHCCCCCCHH
T ss_conf 38899999999825----78997559999999804669999
No 47
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=27.64 E-value=19 Score=12.74 Aligned_cols=38 Identities=8% Similarity=0.115 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 498248899999996347655421023989999999861100
Q gi|254781158|r 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147 (631)
Q Consensus 106 ~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t 147 (631)
+|-.+++++|...+... ..+|.||-+.|...+...+.+
T Consensus 3 ~~~~l~e~di~~~~~~~----~~~gsi~f~eF~~~~~~~~~~ 40 (109)
T 1bu3_A 3 FSGILADADVAAALKAC----EAADSFNYKAFFAKVGLTAKS 40 (109)
T ss_dssp CSCSSCHHHHHHHHHHT----CSTTCCCHHHHHHHHTGGGSC
T ss_pred CCCCCCHHHHHHHHHHC----CCCCCCCHHHHHHHHHHCCCC
T ss_conf 23338999999999715----789984899999998712699
No 48
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.92 E-value=10 Score=14.59 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3788753000014788875303
Q gi|254781158|r 271 TVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 271 ~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
.+..+.|.+.++|..+...++.
T Consensus 44 ~~afV~f~~~~~A~~Ai~~l~g 65 (90)
T 2dnp_A 44 DYAFVHMEKEADAKAAIAQLNG 65 (90)
T ss_dssp SCEEEEESCHHHHHHHHHHHTT
T ss_pred CEEEEEECCHHHHHHHHHHHCC
T ss_conf 3689998999999999997299
No 49
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.59 E-value=13 Score=13.93 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 123788753000014788875303
Q gi|254781158|r 269 IRTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 269 ~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
.+....+.|.+.+.|+.+...++.
T Consensus 43 ~~g~afV~f~~~~~A~~Ai~~l~g 66 (93)
T 2cqh_A 43 KSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp ETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 675589998999999999998279
No 50
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.57 E-value=12 Score=14.06 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 237887530000147888753036
Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKKG 293 (631)
Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~g 293 (631)
+....+.|.+.+.|..++..+..+
T Consensus 48 ~~~afV~f~~~~~A~~A~~~~~~~ 71 (85)
T 2ytc_A 48 QQCAFIQFATRQAAEVAAEKSFNK 71 (85)
T ss_dssp GTEEEEEESSHHHHHHHHHTTTTT
T ss_pred CCEEEEEECCHHHHHHHHHHHCCC
T ss_conf 738999987799999999985199
No 51
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.24 E-value=11 Score=14.40 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 123788753000014788875303
Q gi|254781158|r 269 IRTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 269 ~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
.+....+.|.+.+.|..++..++.
T Consensus 45 ~rg~afV~f~~~~~A~~Ai~~l~g 68 (111)
T 1whx_A 45 GGITAIVEFLEPLEARKAFRHLAY 68 (111)
T ss_dssp SSSCEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 896699998999999999998789
No 52
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=25.90 E-value=21 Score=12.54 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=13.3
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 8498248899999996347655421023989999999
Q gi|254781158|r 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 (631)
Q Consensus 105 ~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L 141 (631)
.+|+.++.+++..... +.+|..+-..|..++
T Consensus 33 ~lg~~~t~~ei~~~~~------~~~g~i~~~eF~~~~ 63 (140)
T 1ggw_A 33 ACGQNPTLAEITEIES------TLPAEVDMEQFLQVL 63 (140)
T ss_dssp HTSCCCCHHHHHHHHT------TSCSSEEHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH------CCCCCCCHHHHHHHH
T ss_conf 9288727878899861------376411378876456
No 53
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A
Probab=25.62 E-value=11 Score=14.42 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 788753000014788875303
Q gi|254781158|r 272 VEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 272 ~~~i~~~~~~~A~~~~~~l~~ 292 (631)
...+.|.+.++|+.+.+.++.
T Consensus 59 ~afV~f~~~~~A~~Ai~~lng 79 (97)
T 2xnq_A 59 FGFIQFDNPQSVRDAIEXESQ 79 (97)
T ss_dssp EEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHHCCC
T ss_conf 789986999999999998099
No 54
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=25.13 E-value=11 Score=14.22 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3788753000014788875303
Q gi|254781158|r 271 TVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 271 ~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
.+..+.|.+.++|+.+...++.
T Consensus 46 ~~afV~f~~~~~A~~Ai~~lng 67 (103)
T 2dgu_A 46 DYAFIHFDERDGAVKAMEEMNG 67 (103)
T ss_dssp SCEEEEESSHHHHHHHHHHHTT
T ss_pred EEEEEEECCHHHHHHHHHHHCC
T ss_conf 4778897999999999998689
No 55
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=25.12 E-value=21 Score=12.44 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=24.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99984982488999999963476554210239899999998
Q gi|254781158|r 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142 (631)
Q Consensus 102 ~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~ 142 (631)
....+|+.+|+.++...+..... +.+|..+-..|...+.
T Consensus 39 ~L~~lg~~~s~~ei~~l~~~~d~--d~~g~I~~~eF~~~~~ 77 (158)
T 2jnf_A 39 ILEVLGIQQTKSTIRQLIDEFDP--FGNGDIDFDSFKIIGA 77 (158)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHCT--TCCSEECHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHCC--CCCCCEEEEECHHHHH
T ss_conf 99987899899999999998686--9998576530100112
No 56
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.07 E-value=11 Score=14.43 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 123788753000014788875303
Q gi|254781158|r 269 IRTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 269 ~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
.+.+..+.|.+.+.|+.+...++.
T Consensus 50 ~rg~afV~f~~~~~A~~Ai~~l~g 73 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNG 73 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 188699997999999999998099
No 57
>2k7b_A CABP1, calbrain, calcium-binding protein 1; EF-hand, alternative splicing, cell membrane, cytoplasm, cytoskeleton, lipoprotein, membrane, myristate; NMR {Homo sapiens}
Probab=24.89 E-value=22 Score=12.42 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=25.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999984982488999999963476554210239899999998
Q gi|254781158|r 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142 (631)
Q Consensus 100 ~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~ 142 (631)
....+.+|..+|+++|...+...-. +.+|..+-+.|...+.
T Consensus 33 ~~~l~~lg~~~t~~e~~~~~~~~D~--~~~g~i~~~eF~~~m~ 73 (76)
T 2k7b_A 33 GNCMRTMGYMPTEMELIELSQQINM--NLGGHVDFDDFVELMG 73 (76)
T ss_dssp HHHHHHHHSCSCSSHHHHHHHHGGG--TSSSCBCHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHCC--CCCCEEEHHHHHHHHH
T ss_conf 9999993899999999999999679--9998182999999998
No 58
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=24.80 E-value=22 Score=12.41 Aligned_cols=39 Identities=8% Similarity=0.204 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 4889999999634765542102398999999986110056776
Q gi|254781158|r 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152 (631)
Q Consensus 110 vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~ 152 (631)
+++++|...+... +.+|.+|-..|...+.....++..+.
T Consensus 7 l~~edi~~~~~~~----d~dg~idf~eF~~~~~~~~~~~~~~~ 45 (110)
T 1pva_A 7 LKADDIKKALDAV----KAEGSFNHKKFFALVGLKAMSANDVK 45 (110)
T ss_dssp SCHHHHHHHHHHT----CSTTCCCHHHHHHHHTCTTSCHHHHH
T ss_pred CCHHHHHHHHHHC----CCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9999999999821----89998879999999986149999999
No 59
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=24.71 E-value=22 Score=12.39 Aligned_cols=41 Identities=5% Similarity=0.032 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9824889999999634765-5421023989999999861100
Q gi|254781158|r 107 GLEADHGRVWGEIARSPLF-HGKDNKFSHDVFVSRLAREGIN 147 (631)
Q Consensus 107 gi~vsd~~v~~~i~~~p~F-q~~~G~Fd~~~~~~~L~~~g~t 147 (631)
.+.+|++++.+.-..-..| ++.+|..+...+...|+..|..
T Consensus 7 ~~~ls~~q~~el~~~F~~~D~~~~G~I~~~el~~~l~~lg~~ 48 (153)
T 2ovk_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRV 48 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCC
T ss_conf 589899999999999999778999848499999999995788
No 60
>2cxa_A Leucyl/phenylalanyl-tRNA-protein transferase; aminoacyl-tRNA, protein degradation, structural genomics, NPPSFA; HET: MSE; 1.60A {Escherichia coli} SCOP: d.108.1.6 PDB: 2dps_A 2dpt_A* 2z3o_A* 2z3k_A* 2z3l_A* 2z3m_A* 2z3n_A* 2z3p_A*
Probab=24.59 E-value=11 Score=14.42 Aligned_cols=14 Identities=7% Similarity=0.328 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 45443322221100
Q gi|254781158|r 226 APEYKRISYILFDV 239 (631)
Q Consensus 226 ~pe~~~i~yv~~~~ 239 (631)
.|+.+......+++
T Consensus 12 ~~~~~~m~i~~L~~ 25 (256)
T 2cxa_A 12 DPALRAMRLVQLSR 25 (256)
T ss_dssp ------CCSEECCS
T ss_pred CHHHHCEEEEECCC
T ss_conf 95783157366487
No 61
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.06 E-value=13 Score=13.87 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 788753000014788875303
Q gi|254781158|r 272 VEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 272 ~~~i~~~~~~~A~~~~~~l~~ 292 (631)
...+.|.+.++|+.+.+.++.
T Consensus 52 ~afV~f~~~~~A~~Ai~~lng 72 (108)
T 1x4c_A 52 TGVVEFVRKEDMTYAVRKLDN 72 (108)
T ss_dssp EEEEEESSHHHHHHHHHHSSS
T ss_pred EEEEEECCHHHHHHHHHHHCC
T ss_conf 399997999999999999788
No 62
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.52 E-value=11 Score=14.21 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23788753000014788875303
Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
+....+.|.+.+.|..+...++.
T Consensus 51 kg~afV~f~~~~~A~~A~~~l~~ 73 (99)
T 2cpj_A 51 KGFGFIRLETRTLAEIAKVELDN 73 (99)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHHCC
T ss_conf 98699998899999999998199
No 63
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 2ctn_A 2kgb_C 2jxl_A 1r2u_A ...
Probab=23.48 E-value=23 Score=12.24 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=11.7
Q ss_pred HCCCCHHHHHHHHHHHHHH
Q ss_conf 1023989999999861100
Q gi|254781158|r 129 DNKFSHDVFVSRLAREGIN 147 (631)
Q Consensus 129 ~G~Fd~~~~~~~L~~~g~t 147 (631)
+|..+...|..+|++.|..
T Consensus 33 ~G~I~~~el~~~L~~~~~~ 51 (161)
T 1dtl_A 33 DGSISTKELGKVMRMLGQN 51 (161)
T ss_dssp GGSBCHHHHHHHHHHTTCC
T ss_pred CCEECHHHHHHHHHHCCCC
T ss_conf 8979999999999980899
No 64
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.86 E-value=12 Score=14.04 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 788753000014788875303
Q gi|254781158|r 272 VEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 272 ~~~i~~~~~~~A~~~~~~l~~ 292 (631)
...|.|.+.++|..+...++.
T Consensus 46 ~afV~f~~~~~A~~Ai~~l~g 66 (92)
T 2dgt_A 46 YAFVHMERAEDAVEAIRGLDN 66 (92)
T ss_dssp EEEEEESCHHHHHHHHHHHTT
T ss_pred EEEEEECCHHHHHHHHHHCCC
T ss_conf 789998999999999998199
No 65
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=22.74 E-value=13 Score=13.89 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23788753000014788875303
Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
+.+..+.|.+.++|..+++.++.
T Consensus 73 ~g~afV~f~~~~~A~~Ai~~lng 95 (121)
T 2bz2_A 73 RNCAFVTYEKMESADQAVAELNG 95 (121)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHHCC
T ss_conf 98899997989999999998699
No 66
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.62 E-value=16 Score=13.32 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23788753000014788875303
Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
+.+.+|.|.+.+.|..++..++.
T Consensus 61 kg~afV~f~~~~~A~~Ai~~lng 83 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNG 83 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHHCC
T ss_conf 61689998899999999998399
No 67
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2otg_B* 2os8_B* 2ec6_B
Probab=22.30 E-value=24 Score=12.09 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=14.9
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 98498248899999996347655421023989999999
Q gi|254781158|r 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141 (631)
Q Consensus 104 ~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L 141 (631)
+.+|..++..++...+. +..|..+...|..++
T Consensus 45 ~~~g~~~~~~el~~~~~------~~~~~i~~~~f~~~~ 76 (156)
T 1wdc_B 45 EQLGRAPDDKELTAMLK------EAPGPLNFTMFLSIF 76 (156)
T ss_dssp HHHSSCCCHHHHHHHHT------TSSSCCCHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHH------CCCCCCCHHHHHHHH
T ss_conf 98389862899999987------078842399999998
No 68
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.12 E-value=15 Score=13.49 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23788753000014788875303
Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
+.+..+.|.+.+.|..+...++.
T Consensus 49 ~g~afV~f~~~~~A~~Ai~~~n~ 71 (97)
T 1x5p_A 49 RNCAFVTYEKMESADQAVAELNG 71 (97)
T ss_dssp TTEEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEEECCHHHHHHHHHHHCC
T ss_conf 99799998978999999998499
No 69
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.99 E-value=14 Score=13.65 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3788753000014788875303
Q gi|254781158|r 271 TVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 271 ~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
.+..+.|.+.++|+.+...++.
T Consensus 43 g~afV~f~~~~~A~~Ai~~l~g 64 (90)
T 2dnq_A 43 NYGFVHIEDKTAAEDAIRNLHH 64 (90)
T ss_dssp TEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEECCHHHHHHHHHHCCC
T ss_conf 5199998999999999998099
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.95 E-value=17 Score=13.01 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23788753000014788875303
Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
+.+..+.|.+.++|..+.+.++.
T Consensus 61 ~g~afV~f~~~~~a~~Ai~~l~g 83 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDG 83 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEECCHHHHHHHHHHCCC
T ss_conf 97499886999999999998399
No 71
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.68 E-value=17 Score=13.16 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 123788753000014788875303
Q gi|254781158|r 269 IRTVEQLVFPNQKEADEAFQSLKK 292 (631)
Q Consensus 269 ~~~~~~i~~~~~~~A~~~~~~l~~ 292 (631)
.+.+..+.|.+.++|+.+...++.
T Consensus 51 ~~g~afV~F~~~e~A~~Ai~~lng 74 (99)
T 2div_A 51 PAGYCFVEFADLATAEKCLHKING 74 (99)
T ss_dssp EEEEEEEECSCHHHHHHHHHTTTT
T ss_pred CCCEEEEEECCHHHHHHHHHHHCC
T ss_conf 477478997999999999998688
No 72
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=20.57 E-value=14 Score=13.74 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 37887530000147888753036
Q gi|254781158|r 271 TVEQLVFPNQKEADEAFQSLKKG 293 (631)
Q Consensus 271 ~~~~i~~~~~~~A~~~~~~l~~g 293 (631)
.+..+.|.+.++|+.+...++..
T Consensus 85 g~afV~f~~~~~A~~Ai~~lng~ 107 (164)
T 1sjr_A 85 FQALLQYADPVSAQHAKLSLDGQ 107 (164)
T ss_dssp EEEEEEESCHHHHHHHHHHSTTB
T ss_pred CEEEEEECCHHHHHHHHHHHCCC
T ss_conf 86999979999999999987798
No 73
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=20.37 E-value=26 Score=11.84 Aligned_cols=43 Identities=7% Similarity=0.052 Sum_probs=28.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999999849824889999999634765542102398999999986
Q gi|254781158|r 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143 (631)
Q Consensus 99 l~~~a~~~gi~vsd~~v~~~i~~~p~Fq~~~G~Fd~~~~~~~L~~ 143 (631)
+....+.+|+.+|++++...+.... .+.+|..+.+.|..++.+
T Consensus 23 l~~~l~~~g~~~~~~e~~~~~~~~D--~d~dg~i~~~eF~~~~~~ 65 (67)
T 1tiz_A 23 FREVALAFSPYFTQEDIVKFFEEID--VDGNGELNADEFTSCIEK 65 (67)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHC--CSSSSEECHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHC--CCCCCEECHHHHHHHHHH
T ss_conf 9999998299998799999999858--999597829999999998
No 74
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, protein structure initiative; 1.60A {Bacillus anthracis str} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A*
Probab=20.12 E-value=18 Score=12.96 Aligned_cols=24 Identities=17% Similarity=0.366 Sum_probs=13.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 876402268999999999999983
Q gi|254781158|r 5 IRKASRTWVAKIFLVVLFVPFLIW 28 (631)
Q Consensus 5 iR~~~~s~~~~ii~~l~~~~f~~~ 28 (631)
-+++.++|+.+|+++++++.|+++
T Consensus 5 k~kk~~~~~~~il~~i~l~v~~~~ 28 (254)
T 1rz2_A 5 KERKKKIFFQRILTVVFLGTFFYS 28 (254)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 210177999999999999999999
No 75
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.06 E-value=19 Score=12.70 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 237887530000147888753036514
Q gi|254781158|r 270 RTVEQLVFPNQKEADEAFQSLKKGKKF 296 (631)
Q Consensus 270 ~~~~~i~~~~~~~A~~~~~~l~~g~~F 296 (631)
+.+..+.|.+.+.|..+++.+..|..|
T Consensus 58 ~g~afV~f~~~~~A~~Ai~~l~~~~~~ 84 (107)
T 2cph_A 58 RGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp CSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCEE
T ss_conf 667999989899999999970099488
Done!