HHSEARCH alignment of GI: 254781158 and SCOP domain: d1m5ya1

Alignment
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]}
Probab=99.77  E-value=2e-17  Score=128.66  Aligned_cols=143  Identities=18%  Similarity=0.163  Sum_probs=116.3

Q ss_pred             CEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             42899998784899999999999999998708899978998601389999999999999999998498248899999996
Q gi|254781158|r   41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA  120 (631)
Q Consensus        41 ~~va~V~g~~I~~~~f~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~qvl~~li~~~ll~~~a~~~gi~vsd~~v~~~i~  120 (631)
                      .+||+|||++||..|+..++.....++.++ |...+..+    .++.++|++||++.|+.++|+++||.||+++|...|.
T Consensus         3 ~VvA~Vn~~~It~~dl~~~~~~~~~~~~~~-~~~~~~~~----~l~~~vl~~LI~~~Ll~q~a~~~~i~vs~~ev~~~i~   77 (173)
T d1m5ya1           3 KVAAVVNNGVVLESDVDGLMQSVKLNAAQA-RQQLPDDA----TLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIA   77 (173)
T ss_dssp             CEEEEESSSEEEHHHHHHHHHHHHHHHHTT-TCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             EEEEEECCEEECHHHHHHHHHHHHHHHHHC-CCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             389988998577999999999999998753-57798424----7999999999999999999987044589999999999


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             34765542102398999999986110056776788877544455543014542200222334554321112333210000
Q gi|254781158|r  121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR  200 (631)
Q Consensus       121 ~~p~Fq~~~G~Fd~~~~~~~L~~~g~t~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~i~~~~~~~~  200 (631)
                      ++ +   ..+.+|.+.|..+|..+|+|+..|++.++.++..+++.+...                               
T Consensus        78 ~~-~---~~~~~~~~~f~~~L~~~g~~~~~~~~~ir~~l~~~~l~~~~v-------------------------------  122 (173)
T d1m5ya1          78 NI-A---KQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEV-------------------------------  122 (173)
T ss_dssp             HH-H---HHTTCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred             HH-H---HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_conf             99-9---885898999999998739989999999999999999999983-------------------------------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             1234567898899999765666555
Q gi|254781158|r  201 HVPAIADPSNAVLTQWFEKYKDNYR  225 (631)
Q Consensus       201 ~~~~~~~~td~el~~yy~~nk~~f~  225 (631)
                        .+.+.||++|+++||+.+...|.
T Consensus       123 --~~~i~Vt~~Ei~~~~~~~~~~~~  145 (173)
T d1m5ya1         123 --RRRITILPQEVESLAQQVDRAYR  145 (173)
T ss_dssp             --HHTCCCCTTHHHHHHHCCCHHHH
T ss_pred             --CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             --16898699999999998878887


SCOP domain information

class: All alpha proteins
fold: Triger factor/SurA peptide-binding domain-like
superfamily: Triger factor/SurA peptide-binding domain-like
family: Porin chaperone SurA, peptide-binding domain
domain: Porin chaperone SurA, peptide-binding domain
species: Escherichia coli [TaxId: 562]