RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans
isomerase D signal peptide protein [Candidatus Liberibacter asiaticus
str. psy62]
         (631 letters)



>gnl|CDD|182731 PRK10788, PRK10788, periplasmic folding chaperone; Provisional.
          Length = 623

 Score =  130 bits (330), Expect = 9e-31
 Identities = 100/396 (25%), Positives = 194/396 (48%), Gaps = 30/396 (7%)

Query: 1   MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
           M++ +R A+ + V KI L ++ + F++ G+   L   S +     V  Q++  +    ++
Sbjct: 1   MMDNLRTAANSVVLKIILALIILSFILTGVGGYLIGGSNNY-AAKVNGQEISRAQLEQAF 59

Query: 61  KQELGMISQKIG--FVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGR 114
           + E   + Q++G  F   SE A + G    L +++L+ L+  A LDQ+  ++GL     +
Sbjct: 60  QSERNRLQQQLGDQF---SELAANEGYMKQLRQQVLNRLIDEALLDQYARELGLGISDEQ 116

Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
           V   I  +P F   D KF ++ +++ L + G+   +Y     + L+   ++    G    
Sbjct: 117 VKQAIFATPAFQ-TDGKFDNNKYLAILNQMGMTADQYAQALRQQLTTQQLINGVAG---- 171

Query: 175 SNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
           ++ +L    D+      + R V    ++   + A    ++  +  ++++ K+N+ APE  
Sbjct: 172 TDFMLPGETDELAALVAQQRVVREATIDVNALAAKQTVTDEEIKSYYDQNKNNFMAPEQF 231

Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
           ++SYI  D    ++KI +S+ ++QA Y+++++++  PE +    +    + EA      L
Sbjct: 232 KVSYIKLDAATMQQKITVSDADIQAYYDQHQDQFTQPERKRYSIIQTKTEAEAKAVLDEL 291

Query: 291 KKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
           KKG  F  LA+E  KS   IS      LG       PD  L ++   L +KG  + VI  
Sbjct: 292 KKGADFATLAKE--KSTDIISARNGGDLGWLEPATTPD-ELKNA--GLKEKGQLSGVIKS 346

Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
           S G++I  + +I+P+      EV+ DIA +++  KA
Sbjct: 347 SVGFLIVRLDDIQPAKVKPLSEVRDDIAAKVKQEKA 382


>gnl|CDD|178832 PRK00059, prsA, peptidylprolyl isomerase; Provisional.
          Length = 336

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 19/158 (12%)

Query: 244 KKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
           K +++++ + Q  Y +NK K+   P    +  ++   + EA +  + L KG+ F ++A+E
Sbjct: 170 KDVKVTDKDAQKYYNENKSKFTEKPNTMHLAHILVKTEDEAKKVKKRLDKGEDFAKVAKE 229

Query: 303 ---------QGKSLSDISLGS--FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
                    +G  L D+      + KE+       D   +L K+G+ +  +   FGY I 
Sbjct: 230 VSQDPGSKDKGGDLGDVPYSDSGYDKEF------MDGAKAL-KEGEISAPVKTQFGYHII 282

Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
                K      F  VK+DI  Q+   K SE  K+  +
Sbjct: 283 KAIKKKEYPVKPFDSVKEDIKKQLLQEKQSEVFKKKIE 320


>gnl|CDD|129009 smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha
           toxin).  This domain conveys a zinc dependent
           phospholipase C activity (EC 3.1.4.3). It is found in a
           monomeric phospholipase C of Bacillus cereus as well as
           in the alpha toxin of Clostridium perfringens and
           Clostridium bifermentans, which is involved in
           haemolysis and cell rupture. It is also found in a
           lecithinase of Listeria monocytogenes, which is involved
           in breaking the 2-membrane vacuoles that surround the
           bacterium. Structure information: PDB 1ca1.
          Length = 241

 Score = 32.4 bits (74), Expect = 0.34
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 8/87 (9%)

Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
           Y  + S  Y   N   V A+  P +     + +  KDNY     +     L +V++K KK
Sbjct: 143 YLGDLSTPYHANN---VTAVDSPGHRKFENFVQTRKDNYSLNT-EGEKKFLENVNKKAKK 198

Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTV 272
           +  S+  +     K+++ +       +
Sbjct: 199 LYYSHATMS----KSEKDWDYAAGEAL 221


>gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated.
          Length = 434

 Score = 30.6 bits (69), Expect = 1.3
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE-QGKS--LSDISLGS 314
           SP  R   Q +FP   +A +AF +L KG++    +E   GKS  LS I+ GS
Sbjct: 130 SPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181


>gnl|CDD|178730 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
          Length = 1320

 Score = 29.5 bits (66), Expect = 2.4
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 474  ARDRKLEEVLTDVKKDWKT--VKTAEE-----VSSKANQLVLEYSKEGKNFRDIGKNLGA 526
            AR R+++E + DVKK      V+ AE      ++++ + L +E  KE +  RD  K+L A
Sbjct: 1128 ARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQA 1187

Query: 527  SLLTT 531
             L  T
Sbjct: 1188 QLRDT 1192


>gnl|CDD|185290 PRK15392, PRK15392, putative fumarate hydratase; Provisional.
          Length = 550

 Score = 28.4 bits (63), Expect = 5.7
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 88  KILDNL-VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
           K  DNL  SG    Q   DI LE        +      F GK   F+HD+ V RL R G
Sbjct: 250 KYYDNLPTSGNEQGQAFRDIELEKVLLEASQQFGIGAQFGGK--YFAHDIRVIRLPRHG 306


>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
           Provisional.
          Length = 1136

 Score = 28.2 bits (62), Expect = 6.0
 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 21/107 (19%)

Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAE------------EVSSKANQLVLEYSKEG 514
            ++E I   +  +EE  +DV++D +   T E             V++   ++   Y K  
Sbjct: 539 HVEEEISTAEEHIEEPASDVQQDSEAAPTIEIPDTLFYDILGVGVNADMKEISERYFKLA 598

Query: 515 KNFRDIGKNLGASLLTTNQINR-------MDNENKF--FGYDGISQV 552
           +N+    ++         +IN        +D +  +  FGYDGI  V
Sbjct: 599 ENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGV 645


>gnl|CDD|131853 TIGR02806, clostrip, clostripain.  Clostripain is a cysteine
           protease characterized from Clostridium histolyticum,
           and also known from Clostridium perfringens. It is a
           heterodimer processed from a single precursor
           polypeptide, specific for Arg-|-Xaa peptide bonds. The
           older term alpha-clostripain refers to the most active,
           most reduced form, rather than to the product of one of
           several different genes. Clostripain belongs to the
           peptidase family C11, or clostripain family (see
           pfam03415).
          Length = 476

 Score = 28.5 bits (63), Expect = 6.1
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
           +A L  +F++Y       E + I Y  FD+++  +KI  S+     E+ +  +      +
Sbjct: 316 HADLMHYFDEYD------EGEWIEYPYFDLYDLCEKINKSD-----EFNEKTKDLAKNAM 364

Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
           + +++L+      AD+ F+  K+GK  I +
Sbjct: 365 KKLDELIL--YSFADKDFKGFKEGKNGISI 392


>gnl|CDD|182715 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA;
           Provisional.
          Length = 413

 Score = 27.8 bits (62), Expect = 8.7
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 32/121 (26%)

Query: 43  VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA-RSVGLDKKILDNL-------- 93
           V +V    V   S ++   Q + + +Q+ G  +  +   R   L++ I+DN+        
Sbjct: 10  VAAVVNNGVVLESDVDGLMQSVKLNAQQAGQQLPDDATLRHQILERLIMDNIILQMAQKM 69

Query: 94  ---VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
              +S   LDQ I +I                       N  + D   SRLA +G+N   
Sbjct: 70  GVKISDEQLDQAIANIA--------------------AQNNMTLDQMRSRLAYDGLNYNT 109

Query: 151 Y 151
           Y
Sbjct: 110 Y 110


>gnl|CDD|131583 TIGR02531, yecD_yerC, TrpR-related protein YerC/YecD.  This model
           represents a protein subfamily found mostly in the
           Firmicutes (Bacillus and allies). This family is similar
           in sequence to the trp operon repressor TrpR described
           by TIGR01321, and represents a distinct clade within the
           broader family described by pfam01371. At least one
           species, Xylella fastidiosa, in the Proteobacteria, has
           a member of both this family and TIGR01321. Several
           genomes with a member of this family do not synthesize
           tryptophan, and members of this family should not be
           considered trp operon repressors without new evidence.
          Length = 88

 Score = 27.8 bits (62), Expect = 9.2
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 495 TAEEVSSKANQL-VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
           T  E+ S A +L V +  K+GK + DI    GAS  T +++ R  N    +G DG + V 
Sbjct: 30  TINEIQSLAQRLQVAKMLKQGKTYSDIEAETGASTATISRVKRCLN----YGNDGYNIVL 85

Query: 554 S 554
            
Sbjct: 86  E 86


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 10,313,630
Number of extensions: 691503
Number of successful extensions: 1605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1597
Number of HSP's successfully gapped: 33
Length of query: 631
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 532
Effective length of database: 3,855,281
Effective search space: 2051009492
Effective search space used: 2051009492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.0 bits)