RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] (631 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 78.4 bits (193), Expect = 4e-15 Identities = 99/652 (15%), Positives = 166/652 (25%), Gaps = 315/652 (48%) Query: 100 DQFIEDIGLEADHGRVWGEIARSPL-----FHGKDNKFSHDVFVSRLAREGINEKEYIDH 154 +QF + + E G + +P F G +VS L Sbjct: 35 EQFNKILP-EPTEGFAADDEPTTPAELVGKFLG---------YVSSLVEP--------SK 76 Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-----PAIADPS 209 V+ NL L + FEN Y+ N+ H D + Sbjct: 77 VG---QFDQVL----------NLCLTE-----FEN---CYLEGNDIHALAAKLLQENDTT 115 Query: 210 NAVLTQWFEKYKDNYRA------PEYKRISYILFDVHEKEKKIEISNDELQAEY-----E 258 + + Y A P K+ + LF E ++ + Sbjct: 116 LVKTKELIKNY---ITARIMAKRPFDKKSNSALFR-AVGEGNAQL--------VAIFGGQ 163 Query: 259 KNKEKYFSPEIRT--------VEQLVFPNQKEADEAFQSLKKG----KKFIQLAEEQG-- 304 N + YF E+R V L+ K + E L + +K QG Sbjct: 164 GNTDDYFE-ELRDLYQTYHVLVGDLI----KFSAETLSELIRTTLDAEKVFT----QGLN 214 Query: 305 --KSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVI------HGSFGYVIAHVSN 355 + L + PD L S P+I H + V A + Sbjct: 215 ILEWLEN-------PSNTPDKDYLLSIPISC-------PLIGVIQLAH--Y-VVTAKLLG 257 Query: 356 IKP------------------------------SF--------TVSF------QE----- 366 P SF TV F E Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317 Query: 367 ------VKKDIANQ------M-RITKASEKVKEDYKRLEEFLALGTSMDEISR---REKI 410 ++ + N M I+ + +++++++ ++ + K Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLT------QEQVQDYV------NKTNSHLPAGKQ 365 Query: 411 VSIDL---P--LVDFAG------------KDVK---GKEVAAIPYKE-------QLLFRV 443 V I L LV +G + K G + + IP+ E + L Sbjct: 366 VEISLVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL--- 421 Query: 444 FGKDDPLSKD-HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502 P++ H+ + +PA D + D+ VS Sbjct: 422 -----PVASPFHS------HLL-------VPASDL----INKDLV--------KNNVSFN 451 Query: 503 ANQL---VLEYSKE-GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558 A + V Y G + R + ++ + + + PV+ Sbjct: 452 AKDIQIPV--YDTFDGSDLRVLSGSISERI--------------------VDCIIRLPVK 489 Query: 559 MVKCFPIENGLSYVVFKVT---------NSKVGPVQEKDKFISYLTQMMNKD 601 FK T S +G LT NKD Sbjct: 490 WETT---------TQFKATHILDFGPGGASGLGV----------LTH-RNKD 521 Score = 46.1 bits (109), Expect = 2e-05 Identities = 59/328 (17%), Positives = 93/328 (28%), Gaps = 137/328 (41%) Query: 71 IG------FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH--GRV------- 115 IG +VV A+ +G L + + GAT G H G V Sbjct: 241 IGVIQLAHYVVT---AKLLGFTPGELRSYLKGAT--------G----HSQGLVTAVAIAE 285 Query: 116 ---W---GEIARSP---LFH-GKDNKFSHDVF-VSRLAREGINEKEYIDHY----TKMLS 160 W R LF G ++ + + L + ++ +++ + MLS Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVR---CYEAYPNTSLPPSIL--EDSLENNEGVPSPMLS 340 Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD-YIVLNNRHVP-----AIA---DPSNA 211 + SNL +Q V Y+ N H+P I+ N Sbjct: 341 --------I-----SNLTQEQ----------VQDYVNKTNSHLPAGKQVEISLVNGAKNL 377 Query: 212 VLT----------QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL--QAEYEK 259 V++ K K AP S I F E+K++ SN L + + Sbjct: 378 VVSGPPQSLYGLNLTLRKAK----APSGLDQSRIPF----SERKLKFSNRFLPVASPFH- 428 Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLA-----EEQGKSLSDISLG 313 S + L+ D ++ K + G L Sbjct: 429 ------SHLLVPASDLI-----NKDLVKNNVSFNAK---DIQIPVYDTFDGSDLR----- 469 Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPV 341 S + D I L PV Sbjct: 470 VLSGSISE--RIVDCIIRL-------PV 488 Score = 28.8 bits (64), Expect = 3.8 Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 69/178 (38%) Query: 1 MLEIIRKASRTWVAKI------FL-------VVL------FV----PFLIWGLSDALFSV 37 ML I ++ V L + L V P ++GL+ L Sbjct: 338 MLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396 Query: 38 SGSSTVVSVGRQ-KVPFS----SFINSWKQELGMISQKIG--FVVNSERARSVGLDKKIL 90 S + Q ++PFS F N + L + F +S Sbjct: 397 KAPSGL----DQSRIPFSERKLKFSNRF---L-----PVASPF--HSH------------ 430 Query: 91 DNLVSGATLDQFIEDIGLEADHGRVW-GEIARSPLFH---GKD-NKFSHDVFVSRLAR 143 L+ A+ D +D+ + + + + P++ G D S + R+ Sbjct: 431 --LLVPAS-DLINKDL---VKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI-SERIVD 481 >2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} Length = 102 Score = 52.2 bits (125), Expect = 3e-07 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPD 322 P+ + + EA L KG F LA+E+ + +G IPD Sbjct: 3 PQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPD 62 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359 L ++ +KG + VI S G++I + +I+ + Sbjct: 63 -ELKNAGL--KEKGQLSGVIKSSVGFLIVRLDDIQAA 96 >1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408 Score = 46.2 bits (108), Expect = 2e-05 Identities = 49/361 (13%), Positives = 103/361 (28%), Gaps = 59/361 (16%) Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144 L +I++ L+ + Q + +G++ ++ IA K N + D SRLA + Sbjct: 46 LRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIA----KQNNMTLDQMRSRLAYD 101 Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGG------MRPSNLLLDQAKRFYFENRSVDYIVLN 198 G+N Y + K + ++V V +L + +L Sbjct: 102 GLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILI 161 Query: 199 NRHVPAIADPSNAVLTQW------------FEKYKDNYRAPEYKRISYILFDVHEKEK-- 244 +D N +Q F K + A + + +E Sbjct: 162 PLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPG 221 Query: 245 ------------------KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286 + + L+ + + K S ++ + Sbjct: 222 IFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDE 281 Query: 287 F----------QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332 F A ++ G + LG + + + D++ L Sbjct: 282 QARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDP-AFRDALTRL 340 Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392 KG + +H SFG+ + + + + + K + K SE+ + Sbjct: 341 -NKGQMSAPVHSSFGWHLIELLDTRNV-DKTDAAQKDRAYRMLMNRKFSEEAASWMQEQR 398 Query: 393 E 393 Sbjct: 399 A 399 >1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} Length = 93 Score = 40.8 bits (95), Expect = 0.001 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS---LGSFSKEYIPD 322 S +IR ++ ++K A+E + LKKG+KF LA+E S LG F+KE D Sbjct: 2 SGKIR-ASHILVADKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMD 60 Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVI 350 + + + F L K G+ + + +GY I Sbjct: 61 ETFSKAAFKL-KTGEVSDPVKTQYGYHI 87 >1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A Length = 92 Score = 39.1 bits (91), Expect = 0.003 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKK 335 +K A + + +K G F +LA++ S LG F + + + +FS Sbjct: 13 EEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVP-AFDKVVFSC-PV 70 Query: 336 GDFTPVIHGSFGYVIAHV 353 + T +H FGY I V Sbjct: 71 LEPTGPLHTQFGYHIIKV 88 >1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo sapiens} SCOP: d.26.1.1 PDB: 1fjd_A Length = 96 Score = 38.6 bits (90), Expect = 0.004 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE-------QGKSLSDISLGSFSKEYIPDV 323 V ++ + EA + LK G +F ++A + QG L ++ GS + + Sbjct: 4 KVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQ-EA 62 Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357 + A + + K P + FGY I V K Sbjct: 63 AFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96 >3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, NYSGXRC,11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans DSM12444} Length = 112 Score = 37.7 bits (87), Expect = 0.009 Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 3/80 (3%) Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI--PDVSLADSIFSLAKKGD 337 A++ + LK+G F+ A + ++ + G + LA + S+ G Sbjct: 26 FANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASM-GPGQ 84 Query: 338 FTPVIHGSFGYVIAHVSNIK 357 + G+ I ++ + + Sbjct: 85 LAGPVEIRGGFSILYLIDKR 104 >1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1 Length = 139 Score = 35.1 bits (80), Expect = 0.050 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 21/133 (15%) Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281 + + + + S+IL +K + E + +E + Sbjct: 19 SHMASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAA---------------VE 63 Query: 282 EADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGD 337 + + + GK F ++A S LGSF + + ++ ++L K GD Sbjct: 64 QLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQK-PFEEATYAL-KVGD 121 Query: 338 FTPVIHGSFGYVI 350 + ++ G I Sbjct: 122 ISDIVDTDSGVHI 134 >2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A Length = 103 Score = 33.6 bits (76), Expect = 0.13 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDF 338 + +A + G F +LA ++ G I + + S AKKGD Sbjct: 25 ESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDI 84 Query: 339 TPVIHGSFGYVIAHVSNIK 357 I G+ I V++++ Sbjct: 85 VGPIRSGVGFHILKVNDLR 103 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 33.7 bits (76), Expect = 0.14 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 16/60 (26%) Query: 371 IANQMRITKASEKVK----EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 IA R+T+ E ++ E KRL+E A M++ REK A KD++ Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQ-EWREK-----------AKKDLE 121 Score = 30.7 bits (68), Expect = 1.1 Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 29/85 (34%) Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDV---------HEKEKK-IEISNDELQAEYEKNKE 262 LTQ E + +R + KR+ + D EK KK +E N + EKNK Sbjct: 80 LTQEPESIR-KWREEQRKRLQEL--DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK- 135 Query: 263 KYFSPEIRTVEQLVFPNQKEADEAF 287 N + AD+AF Sbjct: 136 ---------------INNRIADKAF 145 >3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* Length = 538 Score = 33.0 bits (74), Expect = 0.18 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 2/76 (2%) Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + + + L + + KTV +VS + YS +G+ F Sbjct: 430 EKGRIIDLVTADNGTFSMPLAGAEIPIPDEVKTVHF--KVSVRGRIYQYAYSFDGETFHT 487 Query: 520 IGKNLGASLLTTNQIN 535 + L + L+ + + Sbjct: 488 LPIELPSWKLSDDYVR 503 >3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A Length = 123 Score = 33.2 bits (75), Expect = 0.19 Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 23/133 (17%) Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280 K+ P R S++L + + +++ E+ E Sbjct: 6 KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALEL----------------- 48 Query: 281 KEADEAFQSLKKGKK-FIQLAEEQGKSLSDISLGSFS--KEYIPDVSLADSIFSLAKKGD 337 + Q +K G++ F LA + S + G D+ F+L + G+ Sbjct: 49 --INGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFAL-RTGE 105 Query: 338 FTPVIHGSFGYVI 350 + + G I Sbjct: 106 MSGPVFTDSGIHI 118 >2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* Length = 535 Score = 33.0 bits (74), Expect = 0.19 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 2/77 (2%) Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + + + D+ L V D + V V+ +A YS +G N+ D Sbjct: 428 EKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVYL--RVTVQATTYKYSYSFDGMNWID 485 Query: 520 IGKNLGASLLTTNQINR 536 + + L+ + I Sbjct: 486 LPVTFESYKLSDDYIKS 502 >3iyd_C DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} Length = 1342 Score = 32.8 bits (74), Expect = 0.22 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 16/172 (9%) Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ-----IKESIPARDRKLE---EVLTDVK 487 +E+LL +FG+ KD ++ +P+G V ++ + R LE L K Sbjct: 898 EEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAK 957 Query: 488 KDWKTVKTAEE--VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545 KD E + S+ +++ E + + ++ L T++ + E Sbjct: 958 KDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQ 1017 Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVV-----FKVTNSKVGPVQEKDKFIS 592 YD + F +E K I G KV + +Q DK Sbjct: 1018 YDELKHEFEKKLE-AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAG 1068 >1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} Length = 1048 Score = 32.5 bits (73), Expect = 0.29 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 15/86 (17%) Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370 +G+ K +PD S DS + G T +I+ + + H VSF + + Sbjct: 38 FVGTLDKAAMPDFSAVDS-----EIGVAT-LINPQYIASVKHNGGYT---NVSFGDGE-- 86 Query: 371 IANQMRITKASEKVKEDYK--RLEEF 394 N+ I + D+ RL++ Sbjct: 87 --NRYNIVDRNNAPSLDFHAPRLDKL 110 >2zjt_A DNA gyrase subunit B; GYRB-CTD, toprim, tail, DNA topoisomerase II, G- segment, T-segment, ATP-binding, nucleotide-binding; HET: DNA; 2.80A {Mycobacterium tuberculosis} Length = 247 Score = 30.4 bits (68), Expect = 1.2 Identities = 29/167 (17%), Positives = 49/167 (29%), Gaps = 25/167 (14%) Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212 T ++ + MRP L++ F + Y + R P A Sbjct: 92 ADVDGQHISTLLLTLLFRFMRP---LIE--NGHVFLAQPPLYKLKWQRSDPEFAYSDRER 146 Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272 K + + I + E+ EL E P +R + Sbjct: 147 DGLLEAGLKAGKKINKEDGIQRY-------KGLGEMDAKEL-------WETTMDPSVRVL 192 Query: 273 EQLVFPNQKEADEAFQSLKKG-----KKFIQLAEEQGKSLSDISLGS 314 Q+ + ADE F L + FI + + L D+ L + Sbjct: 193 RQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFL-DVKLAA 238 >3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} Length = 370 Score = 30.2 bits (67), Expect = 1.5 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 9/42 (21%) Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439 GTSMD +D LVDFAG+ + L Sbjct: 13 GTSMD---------GVDAVLVDFAGEQPQLIGTHTETIPTHL 45 >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Length = 693 Score = 30.1 bits (67), Expect = 1.7 Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413 ++K+D A Q+ + KA ++K + LE D+I R K+ Sbjct: 26 KLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDT 73 >1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 Length = 533 Score = 29.9 bits (66), Expect = 1.8 Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 2/77 (2%) Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + +++ + + ++ K V V+ + ++ YS +++ Sbjct: 426 EELGRILELTICDNFSFSQPLNNKIVIPREVKYVYL--RVNIEKDKYYYFYSFNKEDWHK 483 Query: 520 IGKNLGASLLTTNQINR 536 I L + L+ + I Sbjct: 484 IDIALESKKLSDDYIRG 500 >2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} Length = 111 Score = 29.6 bits (66), Expect = 2.0 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 17/81 (20%) Query: 280 QKEADEAFQSLKKGK-KFIQLAEE---------QGKSLSDISLGSFSKEYIPDVSLADSI 329 +++A+E + + K KF ++A++ + L + G K++ ++ Sbjct: 33 KQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFE------KAL 86 Query: 330 FSLAKKGDFTPVIHGSFGYVI 350 F L K G+ + V+ SFGY I Sbjct: 87 FKL-KDGEVSEVVKSSFGYHI 106 >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 Score = 29.5 bits (65), Expect = 2.3 Identities = 24/170 (14%), Positives = 65/170 (38%), Gaps = 6/170 (3%) Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP-SNLLLDQAKRFYFENRSVD 193 R G+ E E +H + R ++ + ++ +N + + R Sbjct: 241 KRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTY 300 Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253 V NN++ + A + + ++ + E + V EK +K++ S EL Sbjct: 301 NGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAEL 360 Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303 Q +E+ K+ + + +E+ +++ ++ + + ++ ++ Sbjct: 361 QRRHEQMKKNL-EAQHKELEEK----RRQFEDEKANWEAQQRILEQQNSS 405 >1bg1_A Protein (transcription factor STAT3B); transcription factor, protein-DNA complex, cytokine activation; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A Length = 596 Score = 29.3 bits (65), Expect = 2.6 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298 V EK++ +E +++ + ++ +++ VE L Q + D +++LK Sbjct: 11 VTEKQQMLEQHLQDVRKRVQDLEQ-----KMKVVENL----QDDFDFNYKTLKSQGDMQD 61 Query: 299 LAEEQGKSL 307 L Sbjct: 62 LNGNNQSVT 70 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.2 bits (64), Expect = 2.9 Identities = 7/22 (31%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Query: 288 QSLKKGKKFIQL-AEEQGKSLS 308 Q+LKK + ++L A++ +L+ Sbjct: 20 QALKKLQASLKLYADDSAPALA 41 Score = 27.7 bits (60), Expect = 8.1 Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 19/40 (47%) Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561 K L ASL K + D S P +K Sbjct: 23 KKLQASL-------------KLYADD------SAPALAIK 43 >3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus} Length = 119 Score = 29.0 bits (65), Expect = 3.1 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Query: 495 TAEEVSSKANQL-VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 T E+ S + +L V + K+G + I + GAS T +++ R G D + + Sbjct: 55 TVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQW----GNDAYTMIL 110 >3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} Length = 726 Score = 28.8 bits (63), Expect = 4.0 Identities = 21/130 (16%), Positives = 38/130 (29%) Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248 N + IA + V +F + + KRI E E+ + Sbjct: 243 NPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRLEDEQPSTL 302 Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308 S + Q SP++ + L+ P + D ++KK K + Sbjct: 303 SPKKKQRNGGMRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIE 362 Query: 309 DISLGSFSKE 318 + L Sbjct: 363 KVILTRSEAA 372 >1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Length = 177 Score = 28.2 bits (62), Expect = 5.7 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 11/77 (14%) Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS----------LADSIFSLA 333 DE+ Q LKK + I E + L++ S + D+ ++ F+L Sbjct: 97 DESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNL- 155 Query: 334 KKGDFTPVIHGSFGYVI 350 G+ + +I + G I Sbjct: 156 HVGEVSNIIETNSGVHI 172 >1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Score = 28.2 bits (62), Expect = 5.7 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 7/61 (11%) Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519 + W E A D+ EE+ D ++ A E + + V+ + K G + Sbjct: 143 GRTAAWRTTSEEKKALDQASEEIWNDFRE-------AAEAHRQVRKYVMSWIKPGMTMIE 195 Query: 520 I 520 I Sbjct: 196 I 196 >3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A Length = 107 Score = 27.8 bits (62), Expect = 6.8 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%) Query: 495 TAEEVSSKANQL-VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 T E+ S + + V + + + + DI + GAS T +++NR N G DG VF Sbjct: 38 TINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNRSLNY----GNDGYEMVF 93 >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 Score = 27.6 bits (61), Expect = 8.1 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-----KK 295 KE I+ + + ++ E P +R + Q+ + ADE F L + Sbjct: 169 NKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRS 228 Query: 296 FIQ 298 FI Sbjct: 229 FIT 231 >2itk_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; PIN1, isomerase, WW domain; HET: D11 NAL PE4; 1.45A {Homo sapiens} SCOP: b.72.1.1 d.26.1.1 PDB: 2q5a_A* 1f8a_B* 2zr6_A* 1nmv_A 1pin_A* 2zr4_A* 2zr5_A* 2zqt_A* 2zqs_A* 2zqv_A* 2zqu_A 2f21_A* 1zcn_A* 3ik8_A 3ikd_A* 3ikg_A* 1nmw_A 1i6c_A 1i8g_B* 1i8h_B* ... Length = 167 Score = 27.5 bits (60), Expect = 8.6 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 8/80 (10%) Query: 278 PNQKEADEAFQSLKK-----GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS--LADSIF 330 ++EA E + + F LA + S + G + D+ F Sbjct: 84 RTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASF 143 Query: 331 SLAKKGDFTPVIHGSFGYVI 350 +L + G+ + + G I Sbjct: 144 AL-RTGEMSGPVFTDSGIHI 162 >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* Length = 268 Score = 27.7 bits (61), Expect = 8.8 Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 23/158 (14%) Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211 D + + ++ M +++ FY R + + HV IA P Sbjct: 110 ADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPL----VEAGHV-YIALPPLY 164 Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI------EISNDELQAEYEKNKEKYF 265 +++ K ++ A + + + E++ D+L E Sbjct: 165 KMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQL-------WETTM 217 Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKG-----KKFIQ 298 +PE RT+ ++ + A+ L +K+I+ Sbjct: 218 NPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIE 255 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.135 0.381 Gapped Lambda K H 0.267 0.0442 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 5,363,414 Number of extensions: 259641 Number of successful extensions: 940 Number of sequences better than 10.0: 1 Number of HSP's gapped: 929 Number of HSP's successfully gapped: 52 Length of query: 631 Length of database: 5,693,230 Length adjustment: 98 Effective length of query: 533 Effective length of database: 3,317,318 Effective search space: 1768130494 Effective search space used: 1768130494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.6 bits)