RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans
isomerase D signal peptide protein [Candidatus Liberibacter asiaticus
str. psy62]
(631 letters)
>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli
[TaxId: 562]}
Length = 92
Score = 36.9 bits (85), Expect = 0.005
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 279 NQKEADEAFQSLKKGKKFIQLAEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
+K A + + +K G F +LA++ S ++ + +FS
Sbjct: 13 EEKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSC-PVL 71
Query: 337 DFTPVIHGSFGYVIAHV 353
+ T +H FGY I V
Sbjct: 72 EPTGPLHTQFGYHIIKV 88
>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains
{Escherichia coli [TaxId: 562]}
Length = 103
Score = 32.9 bits (74), Expect = 0.081
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDF 338
+ +A + G F +LA ++ G I + + S AKKGD
Sbjct: 25 ESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDI 84
Query: 339 TPVIHGSFGYVIAHVSNIK 357
I G+ I V++++
Sbjct: 85 VGPIRSGVGFHILKVNDLR 103
>d2exha1 b.29.1.23 (A:325-535) Beta-D-xylosidase C-terminal domain
{Geobacillus stearothermophilus [TaxId: 1422]}
Length = 211
Score = 32.7 bits (74), Expect = 0.092
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
+++ + + + + + D+ L V D + V
Sbjct: 79 FQQSAGLVNYYNTQNWTTLQITWHEEKGRILELMTCDHLVVDQPLRGREIVVPDDIEYVY 138
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
V+ +A YS +G N+ D+ + L+ + I
Sbjct: 139 L--RVTVQATTYKYSYSFDGMNWIDLPVTFESYKLSDDYIK 177
>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 119
Score = 31.7 bits (71), Expect = 0.20
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 23/133 (17%)
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
K+ P R S++L + + +++ E+ E
Sbjct: 2 KNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALEL----------------- 44
Query: 281 KEADEAFQSLKKGKK-FIQLAEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ Q +K G++ F LA + S D+ F+L + G+
Sbjct: 45 --INGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFAL-RTGE 101
Query: 338 FTPVIHGSFGYVI 350
+ + G I
Sbjct: 102 MSGPVFTDSGIHI 114
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14
[TaxId: 9606]}
Length = 96
Score = 31.2 bits (70), Expect = 0.29
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--QGKSLSDISLGSFSKEYIPDVSLADSI 329
V ++ + EA + LK G +F ++A + + K+ LG ++ + ++
Sbjct: 5 VRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVG-PFQEAA 63
Query: 330 FSLA-----KKGDFTPVIHGSFGYVIAHVSNIK 357
F+L K P + FGY I V K
Sbjct: 64 FALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 29.1 bits (64), Expect = 1.1
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 13/101 (12%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
W E A D+ EE+ D ++ A E + + V+ + K G +I +
Sbjct: 38 AWRTTSEEKKALDQASEEIWNDFRE-------AAEAHRQVRKYVMSWIKPGMTMIEICEK 90
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
L + ++ EN S P
Sbjct: 91 L------EDCSRKLIKENGLNAGLAFPTGCSLNNCAAHYTP 125
>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains
{Escherichia coli [TaxId: 562]}
Length = 108
Score = 28.9 bits (64), Expect = 1.2
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 280 QKEADEAFQSLKKGK-KFIQLAEE--QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
+ + ++ +K GK F A+E Q ++ + KG
Sbjct: 26 RVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKG 85
Query: 337 DFTPVIHGSFGYVIAHVSNIKP 358
+ +H SFG+ + + + +
Sbjct: 86 QMSAPVHSSFGWHLIELLDTRN 107
>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 120
Score = 27.1 bits (59), Expect = 4.9
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 25/134 (18%)
Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
+ + + + S+IL +K + E + +E ++
Sbjct: 1 HMASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAA---------------VEQ 45
Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS------LADSIFSLAKKG 336
+ + GK EE +SD S + ++ ++L K G
Sbjct: 46 LKSIREDIVSGKANF---EEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYAL-KVG 101
Query: 337 DFTPVIHGSFGYVI 350
D + ++ G I
Sbjct: 102 DISDIVDTDSGVHI 115
>d2bjra2 b.169.1.1 (A:185-368) Sperm motility protein MFP2 {Pig
roundworm (Ascaris suum), isoform B [TaxId: 6253]}
Length = 184
Score = 26.7 bits (59), Expect = 6.0
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
DWK A + +K V +G + G +L + + + NE GY G
Sbjct: 101 DWKPFPEAAQFGAKEWIPVHVDHHKGNISPAVLIVDGKEIL--GKAD-IRNERATIGYGG 157
Query: 549 ISQVFSGP 556
+V GP
Sbjct: 158 TEKVLVGP 165
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 299
Score = 26.1 bits (56), Expect = 7.7
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
++ D + + + F TV P++ + D+ +S
Sbjct: 256 VAEDRVHEAKRQVVRELF---DLTVGGGRHPSEVDTDDVVRS 294
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.381
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,329,729
Number of extensions: 113582
Number of successful extensions: 371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 20
Length of query: 631
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 540
Effective length of database: 1,158,166
Effective search space: 625409640
Effective search space used: 625409640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)