BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] (631 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 631 Score = 1286 bits (3327), Expect = 0.0, Method: Compositional matrix adjust. Identities = 631/631 (100%), Positives = 631/631 (100%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW Sbjct: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA Sbjct: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120 Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD Sbjct: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180 Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH Sbjct: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240 Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA Sbjct: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300 Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF Sbjct: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360 Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF Sbjct: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420 Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE Sbjct: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480 Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE Sbjct: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540 Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK Sbjct: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600 Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK Sbjct: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631 >gi|254780900|ref|YP_003065313.1| homoserine dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 27.3 bits (59), Expect = 0.80, Method: Compositional matrix adjust. Identities = 8/29 (27%), Positives = 20/29 (68%) Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369 +I+G+ Y+++H++N+ SF +E ++ Sbjct: 159 IINGTCNYILSHMNNLGLSFQDCLEEARR 187 >gi|254780745|ref|YP_003065158.1| OstA family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 181 Score = 26.2 bits (56), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 15/76 (19%) Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554 T E+ S +A+++ ++Y+ RD+ +N+INRMD E F G V + Sbjct: 70 TQEDFSLQADKMTIDYNNTN---RDV----------SNKINRMDVERNIFIQSGEINVIA 116 Query: 555 --GPVEMVKCFPIENG 568 G V+ K + NG Sbjct: 117 SNGYVDFQKRILVLNG 132 >gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str. psy62] Length = 221 Score = 26.2 bits (56), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 21/57 (36%) Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321 FSP TV QLV + F K F L G S+S S GS P Sbjct: 98 FSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDP 154 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 26.2 bits (56), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ----AEYEKNK-EKY 264 +L WF N+R K+++ +L + H K I+ + +Q ++E N+ EKY Sbjct: 187 TVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKY 246 Query: 265 FS 266 S Sbjct: 247 IS 248 >gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 Score = 25.8 bits (55), Expect = 2.1, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 23/45 (51%) Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447 E+ +R + V + GK + K+V AI K+Q+ V GKD Sbjct: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299 >gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 482 Score = 25.8 bits (55), Expect = 2.4, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 128 KDNKFSHDVFVSRLAREGINEKEY 151 KD+ + D FV L+REG E+E+ Sbjct: 373 KDSHLTEDRFVLLLSREGKKEREF 396 >gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str. psy62] Length = 169 Score = 25.4 bits (54), Expect = 2.8, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498 +++S+ R +L E LTDV K+W+ + A E Sbjct: 41 VRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71 >gi|254780281|ref|YP_003064694.1| cytochrome-c oxidase assembly factor protein [Candidatus Liberibacter asiaticus str. psy62] Length = 201 Score = 24.3 bits (51), Expect = 5.6, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVG 170 + G+ EK ++DH T +L D G VG Sbjct: 149 KSGVEEKYFVDHTTALL-LFDTAGSIVG 175 >gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 869 Score = 24.3 bits (51), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426 KKDI+ + TK E+++E+Y+ L A+ + E + I PL++ A K Sbjct: 700 TKKDISLISKSTKFLERIEENYQNLSFNKAVA------NIHELVNVISKPLMEIAKKKSN 753 Query: 427 GKEVAAIPY 435 ++ I Y Sbjct: 754 ADRISTIRY 762 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.135 0.381 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 410,929 Number of Sequences: 1233 Number of extensions: 17911 Number of successful extensions: 52 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 16 length of query: 631 length of database: 328,796 effective HSP length: 80 effective length of query: 551 effective length of database: 230,156 effective search space: 126815956 effective search space used: 126815956 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 41 (20.4 bits)