Query         gi|254781159|ref|YP_003065572.1| hypothetical protein CLIBASIA_05330 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 22:20:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781159.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1tr2_A Vinculin isoform 1; ac  27.1      26 0.00077   17.3   1.2   18   49-66     83-100 (116)
  2 >1h6g_A Alpha-1 catenin; adhes  26.9      26 0.00076   17.4   1.1   31   20-65     83-113 (131)
  3 >2z4t_A Beta-galactoside alpha  16.3      30 0.00088   17.0  -0.4   18    5-22    106-123 (174)
  4 >1bbg_A Pollen allergen 5; pro  15.5      60  0.0018   15.3   1.0   11   31-41     10-20  (40)
  5 >1f94_A Bucandin; three-finger  14.4      66   0.002   15.1   1.0   22   28-53     13-34  (63)
  6 >2ex0_A A2,3-sialyltransferase  13.0      41  0.0012   16.2  -0.4   17    6-22    107-123 (177)
  7 >1m33_A BIOH protein; alpha-be  12.9      90  0.0027   14.4   1.3   18    4-21     98-115 (154)
  8 >3dp7_A SAM-dependent methyltr  11.7 1.1E+02  0.0031   14.0   1.4   14   16-29     19-32  (99)
  9 >2ot2_A Hydrogenase isoenzymes   6.6 2.1E+02  0.0062   12.4   3.1   29   34-63     43-71  (75)
 10 >2b3y_A Iron-responsive elemen   6.5      63  0.0019   15.2  -1.5   16   45-60     21-36  (155)

No 1  
>>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A (A:602-717)
Probab=27.14  E-value=26  Score=17.33  Aligned_cols=18  Identities=11%  Similarity=0.189  Sum_probs=13.9

Q ss_pred             ECCCCHHHHHHHHHHHHC
Q ss_conf             023410346546767631
Q gi|254781159|r   49 KLDNSKTAKENLDSFFAT   66 (67)
Q Consensus        49 kldnsktakenldsffat   66 (67)
                      .--+||.|+||+|.|--.
T Consensus        83 ~~P~sk~A~En~e~~~~~  100 (116)
T 1tr2_A           83 RNPGNQAAYEHFETXKNQ  100 (116)
T ss_dssp             SSCSCTHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHH
T ss_conf             594314577779999999


No 2  
>>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} (A:1-131)
Probab=26.95  E-value=26  Score=17.35  Aligned_cols=31  Identities=32%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCHHHHHHHHHHHH
Q ss_conf             6658899887510678848999624034202341034654676763
Q gi|254781159|r   20 SFLPQIFSLIITCGAQGKYCVLSANFQLNKLDNSKTAKENLDSFFA   65 (67)
Q Consensus        20 sflpqifsliitcgaqgkycvlsanfqlnkldnsktakenldsffa   65 (67)
                      +.-||+.+--.+               |-.-.+||.|+||+|.|--
T Consensus        83 ~L~PQVi~AA~~---------------L~~~P~sk~A~Enle~f~~  113 (131)
T 1h6g_A           83 ALCPQVINAALA---------------LAAKPQSKLAQENXDLFKE  113 (131)
T ss_dssp             HHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---------------HHCCCHHHHHHHHHHHHHH
T ss_conf             987999879999---------------8629554777998899999


No 3  
>>2z4t_A Beta-galactoside alpha-2,6-sialyltransferase; GT-B fold, immunoglobulin-like beta-sandwich fold, glycosyltransferase; HET: LBT C5P; 2.50A {Photobacterium SP} (A:341-514)
Probab=16.35  E-value=30  Score=17.02  Aligned_cols=18  Identities=39%  Similarity=0.682  Sum_probs=14.9

Q ss_pred             EEEEEEECCCCHHHHHHH
Q ss_conf             575331014844666665
Q gi|254781159|r    5 VFAITLFSSIPLQKISFL   22 (67)
Q Consensus         5 vfaitlfssiplqkisfl   22 (67)
                      -+|-++|-|+|..||+|+
T Consensus       106 G~aSSlyfSiP~eki~fI  123 (174)
T 2z4t_A          106 GIASSLYFTIPAEKIKFI  123 (174)
T ss_dssp             EECCGGGGTSCGGGEEEE
T ss_pred             CCEEEEEEECCCCCEEEE
T ss_conf             600025896333322389


No 4  
>>1bbg_A Pollen allergen 5; protein allergen, small highly disulfide bonded; NMR {Ambrosia trifida} (A:)
Probab=15.50  E-value=60  Score=15.33  Aligned_cols=11  Identities=55%  Similarity=1.322  Sum_probs=6.8

Q ss_pred             HCCCCCCEEEE
Q ss_conf             10678848999
Q gi|254781159|r   31 TCGAQGKYCVL   41 (67)
Q Consensus        31 tcgaqgkycvl   41 (67)
                      .||.-||||.-
T Consensus        10 ncgkvgkyccs   20 (40)
T 1bbg_A           10 NCGKVGKYCCS   20 (40)
T ss_dssp             TTSCTTSEEEC
T ss_pred             CCCCCCCEECC
T ss_conf             56532656036


No 5  
>>1f94_A Bucandin; three-finger snake presynaptic neurotoxin; 0.97A {Bungarus candidus} (A:)
Probab=14.38  E-value=66  Score=15.12  Aligned_cols=22  Identities=45%  Similarity=0.798  Sum_probs=16.9

Q ss_pred             HHHHCCCCCCEEEEECCEEEEECCCC
Q ss_conf             87510678848999624034202341
Q gi|254781159|r   28 LIITCGAQGKYCVLSANFQLNKLDNS   53 (67)
Q Consensus        28 liitcgaqgkycvlsanfqlnkldns   53 (67)
                      |-|||.|..++|.-    |+|+..|.
T Consensus        13 l~~tcsa~e~fc~k----~~n~is~~   34 (63)
T 1f94_A           13 LKITCSAEETFCYK----WLNKISNE   34 (63)
T ss_dssp             EEEECCTTCCEEEE----EEETTTCC
T ss_pred             EEEEECHHHHHHHH----HHHHCCHH
T ss_conf             88886425889999----99862501


No 6  
>>2ex0_A A2,3-sialyltransferase, A2,6-sialyltransferase; two rossman fold; 1.65A {Pasteurella multocida} (A:223-399)
Probab=13.04  E-value=41  Score=16.23  Aligned_cols=17  Identities=41%  Similarity=0.643  Sum_probs=14.3

Q ss_pred             EEEEEECCCCHHHHHHH
Q ss_conf             75331014844666665
Q gi|254781159|r    6 FAITLFSSIPLQKISFL   22 (67)
Q Consensus         6 faitlfssiplqkisfl   22 (67)
                      +|-++|-|+|..||+|+
T Consensus       107 ~aSSlyfSiP~eki~~i  123 (177)
T 2ex0_A          107 VASSLYFSLPKEKISHI  123 (177)
T ss_dssp             ECCGGGGGSCGGGEEEE
T ss_pred             CEEEEEEECCCCCEEEE
T ss_conf             00026897552312489


No 7  
>>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE 3OH; 1.70A {Escherichia coli} (A:1-109,A:192-236)
Probab=12.93  E-value=90  Score=14.39  Aligned_cols=18  Identities=44%  Similarity=0.571  Sum_probs=14.8

Q ss_pred             EEEEEEEECCCCHHHHHH
Q ss_conf             357533101484466666
Q gi|254781159|r    4 RVFAITLFSSIPLQKISF   21 (67)
Q Consensus         4 rvfaitlfssiplqkisf   21 (67)
                      ||-.+.+.++.|||||+-
T Consensus        98 ~V~~liLi~~~p~~~~~~  115 (154)
T 1m33_A           98 RVRALVTVASSPLQNVSX  115 (154)
T ss_dssp             GEEEEEEESCCSGGGCCS
T ss_pred             CCEEEEEEECCCHHHCCC
T ss_conf             230435750166875347


No 8  
>>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} (A:1-99)
Probab=11.66  E-value=1.1e+02  Score=14.01  Aligned_cols=14  Identities=36%  Similarity=0.638  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             46666658899887
Q gi|254781159|r   16 LQKISFLPQIFSLI   29 (67)
Q Consensus        16 lqkisflpqifsli   29 (67)
                      -|||+|-|-.|-.-
T Consensus        19 AQkIAFaPi~FQ~a   32 (99)
T 3dp7_A           19 AQEIAFGPVVFQVS   32 (99)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             99999873999999


No 9  
>>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} (A:1-75)
Probab=6.59  E-value=2.1e+02  Score=12.40  Aligned_cols=29  Identities=17%  Similarity=0.556  Sum_probs=23.8

Q ss_pred             CCCCEEEEECCEEEEECCCCHHHHHHHHHH
Q ss_conf             788489996240342023410346546767
Q gi|254781159|r   34 AQGKYCVLSANFQLNKLDNSKTAKENLDSF   63 (67)
Q Consensus        34 aqgkycvlsanfqlnkldnsktakenldsf   63 (67)
                      +-|.|-...+.|-+.|+|. ..|.|.++-|
T Consensus        43 ~vGD~VLVH~G~Ai~kide-eeA~etl~~l   71 (75)
T 2ot2_A           43 RVGQWVLVHVGFAMSVINE-AEARDTLDAL   71 (75)
T ss_dssp             CTTCEEEEETTEEEEEECH-HHHHHHHHHH
T ss_pred             CCCCEEEEEHHHHHHHCCH-HHHHHHHHHH
T ss_conf             7688999963277755899-9999999999


No 10 
>>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} (A:1-29,A:240-365)
Probab=6.45  E-value=63  Score=15.23  Aligned_cols=16  Identities=44%  Similarity=0.646  Sum_probs=10.3

Q ss_pred             EEEEECCCCHHHHHHH
Q ss_conf             0342023410346546
Q gi|254781159|r   45 FQLNKLDNSKTAKENL   60 (67)
Q Consensus        45 fqlnkldnsktakenl   60 (67)
                      |.||||..|++-+-++
T Consensus        21 ~~~~~~~~~etI~V~l   36 (155)
T 2b3y_A           21 FNLNKLEDSQVIGYRL   36 (155)
T ss_dssp             ECGGGGCCTCEEEEEE
T ss_pred             ECHHHHCCCCEEEEEE
T ss_conf             4578836161578755


Done!