Query gi|254781159|ref|YP_003065572.1| hypothetical protein CLIBASIA_05330 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 67 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 22:20:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781159.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1tr2_A Vinculin isoform 1; ac 27.1 26 0.00077 17.3 1.2 18 49-66 83-100 (116) 2 >1h6g_A Alpha-1 catenin; adhes 26.9 26 0.00076 17.4 1.1 31 20-65 83-113 (131) 3 >2z4t_A Beta-galactoside alpha 16.3 30 0.00088 17.0 -0.4 18 5-22 106-123 (174) 4 >1bbg_A Pollen allergen 5; pro 15.5 60 0.0018 15.3 1.0 11 31-41 10-20 (40) 5 >1f94_A Bucandin; three-finger 14.4 66 0.002 15.1 1.0 22 28-53 13-34 (63) 6 >2ex0_A A2,3-sialyltransferase 13.0 41 0.0012 16.2 -0.4 17 6-22 107-123 (177) 7 >1m33_A BIOH protein; alpha-be 12.9 90 0.0027 14.4 1.3 18 4-21 98-115 (154) 8 >3dp7_A SAM-dependent methyltr 11.7 1.1E+02 0.0031 14.0 1.4 14 16-29 19-32 (99) 9 >2ot2_A Hydrogenase isoenzymes 6.6 2.1E+02 0.0062 12.4 3.1 29 34-63 43-71 (75) 10 >2b3y_A Iron-responsive elemen 6.5 63 0.0019 15.2 -1.5 16 45-60 21-36 (155) No 1 >>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A (A:602-717) Probab=27.14 E-value=26 Score=17.33 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=13.9 Q ss_pred ECCCCHHHHHHHHHHHHC Q ss_conf 023410346546767631 Q gi|254781159|r 49 KLDNSKTAKENLDSFFAT 66 (67) Q Consensus 49 kldnsktakenldsffat 66 (67) .--+||.|+||+|.|--. T Consensus 83 ~~P~sk~A~En~e~~~~~ 100 (116) T 1tr2_A 83 RNPGNQAAYEHFETXKNQ 100 (116) T ss_dssp SSCSCTHHHHHHHHHHHH T ss_pred HCCCCHHHHHHHHHHHHH T ss_conf 594314577779999999 No 2 >>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} (A:1-131) Probab=26.95 E-value=26 Score=17.35 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=21.0 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCHHHHHHHHHHHH Q ss_conf 6658899887510678848999624034202341034654676763 Q gi|254781159|r 20 SFLPQIFSLIITCGAQGKYCVLSANFQLNKLDNSKTAKENLDSFFA 65 (67) Q Consensus 20 sflpqifsliitcgaqgkycvlsanfqlnkldnsktakenldsffa 65 (67) +.-||+.+--.+ |-.-.+||.|+||+|.|-- T Consensus 83 ~L~PQVi~AA~~---------------L~~~P~sk~A~Enle~f~~ 113 (131) T 1h6g_A 83 ALCPQVINAALA---------------LAAKPQSKLAQENXDLFKE 113 (131) T ss_dssp HHHHHHHHHHHH---------------HHHCTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHH---------------HHCCCHHHHHHHHHHHHHH T ss_conf 987999879999---------------8629554777998899999 No 3 >>2z4t_A Beta-galactoside alpha-2,6-sialyltransferase; GT-B fold, immunoglobulin-like beta-sandwich fold, glycosyltransferase; HET: LBT C5P; 2.50A {Photobacterium SP} (A:341-514) Probab=16.35 E-value=30 Score=17.02 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=14.9 Q ss_pred EEEEEEECCCCHHHHHHH Q ss_conf 575331014844666665 Q gi|254781159|r 5 VFAITLFSSIPLQKISFL 22 (67) Q Consensus 5 vfaitlfssiplqkisfl 22 (67) -+|-++|-|+|..||+|+ T Consensus 106 G~aSSlyfSiP~eki~fI 123 (174) T 2z4t_A 106 GIASSLYFTIPAEKIKFI 123 (174) T ss_dssp EECCGGGGTSCGGGEEEE T ss_pred CCEEEEEEECCCCCEEEE T ss_conf 600025896333322389 No 4 >>1bbg_A Pollen allergen 5; protein allergen, small highly disulfide bonded; NMR {Ambrosia trifida} (A:) Probab=15.50 E-value=60 Score=15.33 Aligned_cols=11 Identities=55% Similarity=1.322 Sum_probs=6.8 Q ss_pred HCCCCCCEEEE Q ss_conf 10678848999 Q gi|254781159|r 31 TCGAQGKYCVL 41 (67) Q Consensus 31 tcgaqgkycvl 41 (67) .||.-||||.- T Consensus 10 ncgkvgkyccs 20 (40) T 1bbg_A 10 NCGKVGKYCCS 20 (40) T ss_dssp TTSCTTSEEEC T ss_pred CCCCCCCEECC T ss_conf 56532656036 No 5 >>1f94_A Bucandin; three-finger snake presynaptic neurotoxin; 0.97A {Bungarus candidus} (A:) Probab=14.38 E-value=66 Score=15.12 Aligned_cols=22 Identities=45% Similarity=0.798 Sum_probs=16.9 Q ss_pred HHHHCCCCCCEEEEECCEEEEECCCC Q ss_conf 87510678848999624034202341 Q gi|254781159|r 28 LIITCGAQGKYCVLSANFQLNKLDNS 53 (67) Q Consensus 28 liitcgaqgkycvlsanfqlnkldns 53 (67) |-|||.|..++|.- |+|+..|. T Consensus 13 l~~tcsa~e~fc~k----~~n~is~~ 34 (63) T 1f94_A 13 LKITCSAEETFCYK----WLNKISNE 34 (63) T ss_dssp EEEECCTTCCEEEE----EEETTTCC T ss_pred EEEEECHHHHHHHH----HHHHCCHH T ss_conf 88886425889999----99862501 No 6 >>2ex0_A A2,3-sialyltransferase, A2,6-sialyltransferase; two rossman fold; 1.65A {Pasteurella multocida} (A:223-399) Probab=13.04 E-value=41 Score=16.23 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=14.3 Q ss_pred EEEEEECCCCHHHHHHH Q ss_conf 75331014844666665 Q gi|254781159|r 6 FAITLFSSIPLQKISFL 22 (67) Q Consensus 6 faitlfssiplqkisfl 22 (67) +|-++|-|+|..||+|+ T Consensus 107 ~aSSlyfSiP~eki~~i 123 (177) T 2ex0_A 107 VASSLYFSLPKEKISHI 123 (177) T ss_dssp ECCGGGGGSCGGGEEEE T ss_pred CEEEEEEECCCCCEEEE T ss_conf 00026897552312489 No 7 >>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE 3OH; 1.70A {Escherichia coli} (A:1-109,A:192-236) Probab=12.93 E-value=90 Score=14.39 Aligned_cols=18 Identities=44% Similarity=0.571 Sum_probs=14.8 Q ss_pred EEEEEEEECCCCHHHHHH Q ss_conf 357533101484466666 Q gi|254781159|r 4 RVFAITLFSSIPLQKISF 21 (67) Q Consensus 4 rvfaitlfssiplqkisf 21 (67) ||-.+.+.++.|||||+- T Consensus 98 ~V~~liLi~~~p~~~~~~ 115 (154) T 1m33_A 98 RVRALVTVASSPLQNVSX 115 (154) T ss_dssp GEEEEEEESCCSGGGCCS T ss_pred CCEEEEEEECCCHHHCCC T ss_conf 230435750166875347 No 8 >>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} (A:1-99) Probab=11.66 E-value=1.1e+02 Score=14.01 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 46666658899887 Q gi|254781159|r 16 LQKISFLPQIFSLI 29 (67) Q Consensus 16 lqkisflpqifsli 29 (67) -|||+|-|-.|-.- T Consensus 19 AQkIAFaPi~FQ~a 32 (99) T 3dp7_A 19 AQEIAFGPVVFQVS 32 (99) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999873999999 No 9 >>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} (A:1-75) Probab=6.59 E-value=2.1e+02 Score=12.40 Aligned_cols=29 Identities=17% Similarity=0.556 Sum_probs=23.8 Q ss_pred CCCCEEEEECCEEEEECCCCHHHHHHHHHH Q ss_conf 788489996240342023410346546767 Q gi|254781159|r 34 AQGKYCVLSANFQLNKLDNSKTAKENLDSF 63 (67) Q Consensus 34 aqgkycvlsanfqlnkldnsktakenldsf 63 (67) +-|.|-...+.|-+.|+|. ..|.|.++-| T Consensus 43 ~vGD~VLVH~G~Ai~kide-eeA~etl~~l 71 (75) T 2ot2_A 43 RVGQWVLVHVGFAMSVINE-AEARDTLDAL 71 (75) T ss_dssp CTTCEEEEETTEEEEEECH-HHHHHHHHHH T ss_pred CCCCEEEEEHHHHHHHCCH-HHHHHHHHHH T ss_conf 7688999963277755899-9999999999 No 10 >>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} (A:1-29,A:240-365) Probab=6.45 E-value=63 Score=15.23 Aligned_cols=16 Identities=44% Similarity=0.646 Sum_probs=10.3 Q ss_pred EEEEECCCCHHHHHHH Q ss_conf 0342023410346546 Q gi|254781159|r 45 FQLNKLDNSKTAKENL 60 (67) Q Consensus 45 fqlnkldnsktakenl 60 (67) |.||||..|++-+-++ T Consensus 21 ~~~~~~~~~etI~V~l 36 (155) T 2b3y_A 21 FNLNKLEDSQVIGYRL 36 (155) T ss_dssp ECGGGGCCTCEEEEEE T ss_pred ECHHHHCCCCEEEEEE T ss_conf 4578836161578755 Done!