RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781159|ref|YP_003065572.1| hypothetical protein
CLIBASIA_05330 [Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>gnl|CDD|161977 TIGR00649, MG423, conserved hypothetical protein.  Contains an
           ATP-binding domain at the N-terminal end of the protein.
           Possibly part of a superfamily of beta-lactmases.
          Length = 422

 Score = 24.6 bits (54), Expect = 5.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 12  SSIPLQKISFLPQIFSLIITCGAQGK 37
           + I L++++  P    LIIT G+QG+
Sbjct: 273 NFISLKEVNNSPDENYLIITTGSQGE 298


>gnl|CDD|151718 pfam11277, Med24_N, Mediator complex subunit 24 N-terminal.  This
           subunit of the Mediator complex appears to be conserved
           only from insects to humans. It is essential for correct
           retinal development in fish. Subunit composition of the
           mediator contributes to the control of differentiation
           in the vertebrate CNS as there are divergent functions
           of the mediator subunits Crsp34/Med27, Trap100/Med24,
           and Crsp150/Med14.
          Length = 991

 Score = 24.4 bits (53), Expect = 6.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 4   RVFAITLFSSIPLQKISFLPQIFSLIITCGAQGKYCVL 41
            +F+  L S     K  F+ Q  SL++ CG +    VL
Sbjct: 909 LLFSQFLGSDELSPKTQFVQQFLSLLVECGEERIGPVL 946


>gnl|CDD|147794 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
           This family consists of the N-terminal region of the
           prokaryotic fibronectin-binding protein. Fibronectin
           binding is considered to be an important virulence
           factor in streptococcal infections. Fibronectin is a
           dimeric glycoprotein that is present in a soluble form
           in plasma and extracellular fluids; it is also present
           in a fibrillar form on cell surfaces. Both the soluble
           and cellular forms of fibronectin may be incorporated
           into the extracellular tissue matrix. While fibronectin
           has critical roles in eukaryotic cellular processes,
           such as adhesion, migration and differentiation, it is
           also a substrate for the attachment of bacteria. The
           binding of pathogenic Streptococcus pyogenes and
           Staphylococcus aureus to epithelial cells via
           fibronectin facilitates their internalisation and
           systemic spread within the host.
          Length = 447

 Score = 24.1 bits (53), Expect = 8.0
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 49  KLDNSKTAKENLDSFFATY 67
            LD +K+  EN   ++  Y
Sbjct: 363 PLDPAKSPSENAQKYYKKY 381


>gnl|CDD|182253 PRK10123, wcaM, putative colanic acid biosynthesis protein;
           Provisional.
          Length = 464

 Score = 24.0 bits (52), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 35  QGKYCVLSANFQLN--KLDNSKTA 56
           +GKY  +  NF+LN  +LDN+  A
Sbjct: 324 KGKYLSIPQNFKLNNIQLDNTHLA 347


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.328    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 991,171
Number of extensions: 43475
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 8
Length of query: 67
Length of database: 5,994,473
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,173,369
Effective search space: 150027701
Effective search space used: 150027701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.1 bits)