RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781159|ref|YP_003065572.1| hypothetical protein
CLIBASIA_05330 [Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
           (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
          Length = 356

 Score = 24.0 bits (51), Expect = 3.4
 Identities = 6/45 (13%), Positives = 16/45 (35%)

Query: 23  PQIFSLIITCGAQGKYCVLSANFQLNKLDNSKTAKENLDSFFATY 67
           PQ+F  ++      +Y  ++  F+   L   +           ++
Sbjct: 96  PQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSF 140


>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
           {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
          Length = 335

 Score = 23.7 bits (50), Expect = 3.9
 Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 2/58 (3%)

Query: 1   MWRRVFAITLFSSIPLQKISFLPQIFSLIITCGAQGKYCVLSANFQLNKLDNSKTAKE 58
               +F +  F        S  PQ++  I+      +   ++  F+  + + ++   E
Sbjct: 68  GGTELFPMKYFEEDAFLAES--PQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNE 123


>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 72

 Score = 22.8 bits (49), Expect = 9.0
 Identities = 6/24 (25%), Positives = 13/24 (54%)

Query: 40 VLSANFQLNKLDNSKTAKENLDSF 63
          V+SA   L +   ++ A E+ ++ 
Sbjct: 29 VVSAARILLRNPGNQAAYEHFETM 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 215,821
Number of extensions: 6807
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 4
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.5 bits)