HHsearch alignment for GI: 254781160 and conserved domain: PRK11713
>PRK11713 16S rRNA m3U1498 methyltransferase; Provisional.
Probab=100.00 E-value=0 Score=440.96 Aligned_cols=235 Identities=37% Similarity=0.565 Sum_probs=203.8
Q ss_pred CCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCC-CCCCCCEE
Q ss_conf 8777408544788889987798759987035789888999977998798753023555-238997541355-55443135
Q gi|254781160|r 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ-TKQSDVQY 84 (245)
Q Consensus 7 m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~-~~~~~i~l 84 (245)
T Consensus 1 m~r~fi~~~l~~~~~i~L~~~~~~Hl~~VlR~k~gd~i~v~dg~g~~~~a~I~~i~k~~~~~~i~~~~~~~~~~~~~i~L 80 (243)
T PRK11713 1 MPRLFVDAPLAAGETVILTGEEAHHLVRVLRLKEGDELRLFDGRGGEYLAEITEIGKKSVEVEILEKLEVEREPPLRLTL 80 (243)
T ss_pred CCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCCEEEE
T ss_conf 97699687678999999788998899981608999999999798979999999955998999995122367899970799
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 413445411567775444456656555542022011------22122335788999975123443433200000011233
Q gi|254781160|r 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 (245)
Q Consensus 85 ~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~ 158 (245)
T Consensus 81 ~~al~K~~~~e~il~k~tElGV~~i~p~~s~rs~~~~~~~~~~~k~eR~~~i~~eA~eQs~r~~lP~i~~~~~l~~~l~~ 160 (243)
T PRK11713 81 AQALPKGDRLELIIQKATELGVSAIIPLITERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEIRPPVSLKELLEA 160 (243)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHH
T ss_conf 99600755899999999872877799997000545212105666699999999999997099828776576799999953
Q ss_pred CCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 32233321263000121102221003678835999888888888999999957995586368874004489999999999
Q gi|254781160|r 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~ 238 (245)
T Consensus 161 ~~~~~~~~i~~~~~~~---~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~g~-~~vsLG~~ILR~ETA~i~als~l~ 236 (243)
T PRK11713 161 LADGDLRLVLHPEANL---AAALKSLKPAGKVLLLIGPEGGFSPEEIELLREAGF-TPVSLGPRILRTETAALAALAALQ 236 (243)
T ss_pred CCCCCCEEEECCCCCC---CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8677828998688775---432011257885899987888999999999998898-898679991357749999999999
Q ss_pred HHHCCCC
Q ss_conf 9847869
Q gi|254781160|r 239 AICGDWY 245 (245)
Q Consensus 239 ~~~g~~~ 245 (245)
T Consensus 237 ~~~~~~~ 243 (243)
T PRK11713 237 ALLGDLG 243 (243)
T ss_pred HHHCCCC
T ss_conf 9855799