HHsearch alignment for GI: 254781160 and conserved domain: PRK11713

>PRK11713 16S rRNA m3U1498 methyltransferase; Provisional.
Probab=100.00  E-value=0  Score=440.96  Aligned_cols=235  Identities=37%  Similarity=0.565  Sum_probs=203.8

Q ss_pred             CCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCC-CCCCCCEE
Q ss_conf             8777408544788889987798759987035789888999977998798753023555-238997541355-55443135
Q gi|254781160|r    7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ-TKQSDVQY   84 (245)
Q Consensus         7 m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~-~~~~~i~l   84 (245)
T Consensus         1 m~r~fi~~~l~~~~~i~L~~~~~~Hl~~VlR~k~gd~i~v~dg~g~~~~a~I~~i~k~~~~~~i~~~~~~~~~~~~~i~L   80 (243)
T PRK11713          1 MPRLFVDAPLAAGETVILTGEEAHHLVRVLRLKEGDELRLFDGRGGEYLAEITEIGKKSVEVEILEKLEVEREPPLRLTL   80 (243)
T ss_pred             CCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCCEEEE
T ss_conf             97699687678999999788998899981608999999999798979999999955998999995122367899970799


Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             413445411567775444456656555542022011------22122335788999975123443433200000011233
Q gi|254781160|r   85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN  158 (245)
Q Consensus        85 ~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~  158 (245)
T Consensus        81 ~~al~K~~~~e~il~k~tElGV~~i~p~~s~rs~~~~~~~~~~~k~eR~~~i~~eA~eQs~r~~lP~i~~~~~l~~~l~~  160 (243)
T PRK11713         81 AQALPKGDRLELIIQKATELGVSAIIPLITERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEIRPPVSLKELLEA  160 (243)
T ss_pred             EEEECCCHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHH
T ss_conf             99600755899999999872877799997000545212105666699999999999997099828776576799999953


Q ss_pred             CCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf             32233321263000121102221003678835999888888888999999957995586368874004489999999999
Q gi|254781160|r  159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ  238 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~  238 (245)
T Consensus       161 ~~~~~~~~i~~~~~~~---~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~g~-~~vsLG~~ILR~ETA~i~als~l~  236 (243)
T PRK11713        161 LADGDLRLVLHPEANL---AAALKSLKPAGKVLLLIGPEGGFSPEEIELLREAGF-TPVSLGPRILRTETAALAALAALQ  236 (243)
T ss_pred             CCCCCCEEEECCCCCC---CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             8677828998688775---432011257885899987888999999999998898-898679991357749999999999


Q ss_pred             HHHCCCC
Q ss_conf             9847869
Q gi|254781160|r  239 AICGDWY  245 (245)
Q Consensus       239 ~~~g~~~  245 (245)
T Consensus       237 ~~~~~~~  243 (243)
T PRK11713        237 ALLGDLG  243 (243)
T ss_pred             HHHCCCC
T ss_conf             9855799