HHsearch alignment for GI: 254781160 and conserved domain: pfam04452
>pfam04452 Methyltrans_RNA RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.
Probab=100.00 E-value=0 Score=402.61 Aligned_cols=217 Identities=35% Similarity=0.554 Sum_probs=186.0
Q ss_pred EEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECC-CCCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 9987798759987035789888999977998798753023555-23899754135-555443135413445411567775
Q gi|254781160|r 22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQ 99 (245)
Q Consensus 22 i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~-~~~~~~i~l~~~~~k~~~~~~ilq 99 (245)
T Consensus 1 i~L~~~~~hHl~kVlR~k~gd~i~v~dg~g~~~~~~I~~i~~~~~~~~i~~~~~~~~~~~~~i~l~~al~K~~~~~~il~ 80 (225)
T pfam04452 1 VTLTDEEAHHLVRVLRLKEGDEIKLFDGDGGEYLAEIEEISKKSVLVKILEKLEVNKELPLKITLAQALPKGDRLELILQ 80 (225)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEHHCCCCCCCCCEEEEEEEEECCHHHHHHHH
T ss_conf 99868998899981858999999999798989999999951881899650002467899971799995007278999999
Q ss_pred HHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf 444456656555542022011------22122335788999975123443433200000011233322333212630001
Q gi|254781160|r 100 KSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG 173 (245)
Q Consensus 100 k~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~ 173 (245)
T Consensus 81 k~tElGV~~i~p~~~ers~~k~~~~~~~~k~~R~~~i~~~A~eQs~r~~lP~I~~~~~l~~~l~~~~~~~~~i~~~~~~~ 160 (225)
T pfam04452 81 KATELGVDRIVPLISERSVVKLDGKRADKKLERWQKIAIEAAEQSGRTRLPEVLPPISLKELLEELDDADKLILHEEAAK 160 (225)
T ss_pred HHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHCCCCCEEEEECCCCC
T ss_conf 99862876579998403545443034666599999999999997199828777266899999961866888999266554
Q ss_pred CCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 211022210036788359998888888889999999579955863688740044899999999999
Q gi|254781160|r 174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 (245)
Q Consensus 174 ~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~ 239 (245)
T Consensus 161 ~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~g~-~~v~LG~~ILR~ETA~i~als~l~~ 225 (225)
T pfam04452 161 SLGELSELLASLKGGKVLLIIGPEGGFSPEEIELLKEAGF-TPVSLGPRILRTETAALAALSALQA 225 (225)
T ss_pred CCCCCHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 4321012321035784589988988999999999998899-8984799946078599999999619