HHsearch alignment for GI: 254781160 and conserved domain: pfam04452

>pfam04452 Methyltrans_RNA RNA methyltransferase. RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.
Probab=100.00  E-value=0  Score=402.61  Aligned_cols=217  Identities=35%  Similarity=0.554  Sum_probs=186.0

Q ss_pred             EEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECC-CCCCCCCEEEECCCCCCHHHHHHH
Q ss_conf             9987798759987035789888999977998798753023555-23899754135-555443135413445411567775
Q gi|254781160|r   22 GKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS-QTKQSDVQYIFSPIKTNRLDYMIQ   99 (245)
Q Consensus        22 i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~-~~~~~~i~l~~~~~k~~~~~~ilq   99 (245)
T Consensus         1 i~L~~~~~hHl~kVlR~k~gd~i~v~dg~g~~~~~~I~~i~~~~~~~~i~~~~~~~~~~~~~i~l~~al~K~~~~~~il~   80 (225)
T pfam04452         1 VTLTDEEAHHLVRVLRLKEGDEIKLFDGDGGEYLAEIEEISKKSVLVKILEKLEVNKELPLKITLAQALPKGDRLELILQ   80 (225)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEHHCCCCCCCCCEEEEEEEEECCHHHHHHHH
T ss_conf             99868998899981858999999999798989999999951881899650002467899971799995007278999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf             444456656555542022011------22122335788999975123443433200000011233322333212630001
Q gi|254781160|r  100 KSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCG  173 (245)
Q Consensus       100 k~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~  173 (245)
T Consensus        81 k~tElGV~~i~p~~~ers~~k~~~~~~~~k~~R~~~i~~~A~eQs~r~~lP~I~~~~~l~~~l~~~~~~~~~i~~~~~~~  160 (225)
T pfam04452        81 KATELGVDRIVPLISERSVVKLDGKRADKKLERWQKIAIEAAEQSGRTRLPEVLPPISLKELLEELDDADKLILHEEAAK  160 (225)
T ss_pred             HHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHCCCCCEEEEECCCCC
T ss_conf             99862876579998403545443034666599999999999997199828777266899999961866888999266554


Q ss_pred             CCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             211022210036788359998888888889999999579955863688740044899999999999
Q gi|254781160|r  174 SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA  239 (245)
Q Consensus       174 ~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~  239 (245)
T Consensus       161 ~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~g~-~~v~LG~~ILR~ETA~i~als~l~~  225 (225)
T pfam04452       161 SLGELSELLASLKGGKVLLIIGPEGGFSPEEIELLKEAGF-TPVSLGPRILRTETAALAALSALQA  225 (225)
T ss_pred             CCCCCHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf             4321012321035784589988988999999999998899-8984799946078599999999619