HHsearch alignment of GI: 254781160 and MMDB domain: 1ipa_A_109-274
>1ipa_A (A:109-274) RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus}
Probab=91.94 E-value=0.4 Score=27.52 Aligned_cols=143 Identities=15% Similarity=0.100 Sum_probs=77.2
Q ss_pred CCCCCCEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5544313541-344541156777544445665655554202201122122335788999975123443433200000011
Q gi|254781160|r 77 TKQSDVQYIF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL 155 (245)
Q Consensus 77 ~~~~~i~l~~-~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~ 155 (245)
.+..++.+++ .+-.+..+-.+++-+--.|++.++...+....... +..++ .|-.+...+....++..+
T Consensus 4 ~~~~~~~ivl~~~~~p~NiG~i~Rta~afG~~~i~~~~~~~~~~~~---------~~r~s--~ga~~~~~~~~~~~~~~~ 72 (166)
T 1ipa_A 4 PSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQ---------VIRNS--TGVVFSLRTLAASESEVL 72 (166)
T ss_dssp CCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESCCCTTCHH---------HHHHT--TTGGGTSCEEEECHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCH---------HEECC--CCEEEEEEEEECCHHHHH
T ss_conf 4689789999679786179999999997399789962883334521---------10124--430689999961578888
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECCCCC--CCHHHHHHH
Q ss_conf 2333223332126300012110222100367883599988888-8888999999957995586368874--004489999
Q gi|254781160|r 156 LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLGPRI--LRSDTAAVA 232 (245)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG~~I--LR~ETA~i~ 232 (245)
.+.......++.. ..... .........+.+.+++|+|+ |.|+++++.....- .+.+.+.+ |=.-.|+-.
T Consensus 73 ~~~~~~~~~i~~~-~~~~~----~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v---~IP~~g~~~SLNva~A~~I 144 (166)
T 1ipa_A 73 DWIKQHNLPLVAT-TPHAE----ALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQV---RIPMQGQADSLNVSVSAAL 144 (166)
T ss_dssp HHHHHTTCCEEEE-CTTCS----SBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEE---BCCCCSSCCCCCHHHHHHH
T ss_pred HHHHHCCEEEECC-CCCCC----CCCEEECCCCCCEEEECCCCCCCCHHHHHHCCEEE---EECCCCCCCCHHHHHHHHH
T ss_conf 8765123001011-13565----32201024777389986777888999997489799---9779999970049999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781160|r 233 AMALVQ 238 (245)
Q Consensus 233 als~~~ 238 (245)
++.-+.
T Consensus 145 ~lye~~ 150 (166)
T 1ipa_A 145 LLYEAL 150 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999