HHsearch results for GI: 254781160 and protein with PDBid: 3kw2_A

>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=100.00  E-value=0  Score=423.37  Aligned_cols=238  Identities=21%  Similarity=0.293  Sum_probs=199.9

Q ss_pred             CCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCC-CCCCC
Q ss_conf             6778777408544788889987798759987035789888999977998798753023555-238997541355-55443
Q gi|254781160|r    4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ-TKQSD   81 (245)
Q Consensus         4 ~~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~-~~~~~   81 (245)
                      .|+||+||.++ +  +.++.|+++++|||.||||+++||.|.++||+|..|.|+|++++++ +.+.+......+ ..+++
T Consensus         2 ~m~l~~Fy~~~-~--~~~~~L~~~~~hHl~kVLRl~~Gd~i~v~dg~G~~~~~~I~~i~k~~~~~~i~~~~~~~~~~~~~   78 (257)
T 3kw2_A            2 SLSLPLFYAPD-I--EQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRDR   78 (257)
T ss_dssp             ---CCEEECTT-T--TTCSBCCHHHHHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCCSSCSC
T ss_pred             CCCCCEEECCC-C--CCCCEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCCE
T ss_conf             84553687899-8--76661798999899965768999989999797988999999903875999862022456888864


Q ss_pred             CEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             135413445-4115677754444566565555420220112212233578899997512344343320000001123332
Q gi|254781160|r   82 VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD  160 (245)
Q Consensus        82 i~l~~~~~k-~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~  160 (245)
                      ++|+++++| +++|||++||+|||||++|+|+.++||+++.++.+||++|+++|||||||+++|+|..+.+|+++++..+
T Consensus        79 i~l~~a~~k~~~r~d~ilqk~tELGV~~I~p~~s~~s~~~~~~~~R~~~i~~ea~eQs~r~~~P~I~~~~~l~~~l~~~~  158 (257)
T 3kw2_A           79 ITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTP  158 (257)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCC
T ss_conf             89997244441079999878776184489951123203320378899999999999727553867715548999997470


Q ss_pred             CCCCCCCCCCHHCCCCC-----HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf             23332126300012110-----2221003678835999888888888999999957995586368874004489999999
Q gi|254781160|r  161 HNCQIVFADETCGSENS-----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA  235 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als  235 (245)
                      .....++++........     ..........++++++||||||||++|+++|+++|| ++|+||++|||||||+|+|+|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~IGPEGGfs~~Ei~~l~~~g~-~~vsLG~~ILRtETA~i~als  237 (257)
T 3kw2_A          159 KAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVACQ  237 (257)
T ss_dssp             TTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTTCCCHHHHHHHHHHTC-EEECCCSSCCCHHHHHHHHHH
T ss_pred             CCCCCEECHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHH
T ss_conf             1242120001320002233200121134236881799988998999999999998799-898679982557869999999


Q ss_pred             HHHHHHCCCC
Q ss_conf             9999847869
Q gi|254781160|r  236 LVQAICGDWY  245 (245)
Q Consensus       236 ~~~~~~g~~~  245 (245)
                      ++++++|+|-
T Consensus       238 ~l~~L~~~~~  247 (257)
T 3kw2_A          238 WIHTLQACYR  247 (257)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHH
T ss_conf             9999986640