HHsearch results for GI: 254781160 and protein with PDBid: 3kw2_A
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=100.00 E-value=0 Score=423.37 Aligned_cols=238 Identities=21% Similarity=0.293 Sum_probs=199.9
Q ss_pred CCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCC-CCCCC
Q ss_conf 6778777408544788889987798759987035789888999977998798753023555-238997541355-55443
Q gi|254781160|r 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ-TKQSD 81 (245)
Q Consensus 4 ~~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~-~~~~~ 81 (245)
.|+||+||.++ + +.++.|+++++|||.||||+++||.|.++||+|..|.|+|++++++ +.+.+......+ ..+++
T Consensus 2 ~m~l~~Fy~~~-~--~~~~~L~~~~~hHl~kVLRl~~Gd~i~v~dg~G~~~~~~I~~i~k~~~~~~i~~~~~~~~~~~~~ 78 (257)
T 3kw2_A 2 SLSLPLFYAPD-I--EQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRDR 78 (257)
T ss_dssp ---CCEEECTT-T--TTCSBCCHHHHHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCCSSCSC
T ss_pred CCCCCEEECCC-C--CCCCEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCCE
T ss_conf 84553687899-8--76661798999899965768999989999797988999999903875999862022456888864
Q ss_pred CEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 135413445-4115677754444566565555420220112212233578899997512344343320000001123332
Q gi|254781160|r 82 VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD 160 (245)
Q Consensus 82 i~l~~~~~k-~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~ 160 (245)
++|+++++| +++|||++||+|||||++|+|+.++||+++.++.+||++|+++|||||||+++|+|..+.+|+++++..+
T Consensus 79 i~l~~a~~k~~~r~d~ilqk~tELGV~~I~p~~s~~s~~~~~~~~R~~~i~~ea~eQs~r~~~P~I~~~~~l~~~l~~~~ 158 (257)
T 3kw2_A 79 ITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTP 158 (257)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCC
T ss_conf 89997244441079999878776184489951123203320378899999999999727553867715548999997470
Q ss_pred CCCCCCCCCCHHCCCCC-----HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 23332126300012110-----2221003678835999888888888999999957995586368874004489999999
Q gi|254781160|r 161 HNCQIVFADETCGSENS-----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als 235 (245)
.....++++........ ..........++++++||||||||++|+++|+++|| ++|+||++|||||||+|+|+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~IGPEGGfs~~Ei~~l~~~g~-~~vsLG~~ILRtETA~i~als 237 (257)
T 3kw2_A 159 KAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVACQ 237 (257)
T ss_dssp TTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTTCCCHHHHHHHHHHTC-EEECCCSSCCCHHHHHHHHHH
T ss_pred CCCCCEECHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHH
T ss_conf 1242120001320002233200121134236881799988998999999999998799-898679982557869999999
Q ss_pred HHHHHHCCCC
Q ss_conf 9999847869
Q gi|254781160|r 236 LVQAICGDWY 245 (245)
Q Consensus 236 ~~~~~~g~~~ 245 (245)
++++++|+|-
T Consensus 238 ~l~~L~~~~~ 247 (257)
T 3kw2_A 238 WIHTLQACYR 247 (257)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHH
T ss_conf 9999986640