BLAST/PSIBLAST alignment of GI: 254781160 and GI: 49473945 at iteration 1
>gi|49473945|ref|YP_031987.1| hypothetical protein BQ02980 [Bartonella quintana str. Toulouse] Length = 244
>gi|49239448|emb|CAF25798.1| hypothetical protein BQ02980 [Bartonella quintana str. Toulouse] Length = 244
 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/247 (47%), Positives = 155/247 (62%), Gaps = 6/247 (2%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           M I+  LKRLF+  PL +  + K  G +  YL HVLRM+EG  ILLFNG+DGEWL+K+  
Sbjct: 1   MHINYKLKRLFIRQPLVLNEEIKIEGQKASYLIHVLRMQEGAEILLFNGQDGEWLAKLIT 60

Query: 61  VGKS-IRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
           + K  +  K+ +Q R QT  S++ Y F+P+K  RLDYM+QK+VEMG+  ++PVIT +TQ 
Sbjct: 61  IKKRFVVVKLIHQERLQTAPSNLIYCFAPLKNARLDYMVQKAVEMGVSILQPVITHHTQV 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLE 179
           T  N  R+    + A+EQC IL+LP   P  +L  LL  WD    + F DE     N L 
Sbjct: 121 TRINRTRMEANVVEASEQCGILSLPECVPAVSLVELLACWDETQPLFFCDEAHKLHNPLP 180

Query: 180 --KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237
             K H +  +P V  LIGPEGG+  EE+  L    FV P+ LGPRILR+DTAAV A+AL+
Sbjct: 181 LLKKHEMT-VPGV--LIGPEGGFSKEERSFLKKHSFVIPIPLGPRILRADTAAVVALALL 237

Query: 238 QAICGDW 244
            A  GDW
Sbjct: 238 NATVGDW 244