RPSBLAST alignment for GI: 254781160 and conserved domain: TIGR00046

>gnl|CDD|129157 TIGR00046, TIGR00046, RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA. Length = 240
 Score =  110 bits (277), Expect = 3e-25
 Identities = 63/245 (25%), Positives = 118/245 (48%), Gaps = 16/245 (6%)

Query: 8   KRLFVDFPLCIKTQG-KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SI 65
            R+    P  ++      + ++ H+L  VLR+K+GD + L +G    +  +I  + K  +
Sbjct: 2   MRIVYH-PEQLEEATISLTEEEAHHLVRVLRLKKGDKLKLLDGDGFIYHCEIKKISKKFV 60

Query: 66  RFKVEYQSRSQTKQSDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVIT-----RYTQN 119
           + ++      + +     ++    IK  +++++I+K  E+G+  I P        +    
Sbjct: 61  KCELLEGESEKRELPLKIHLAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIE 120

Query: 120 THYNMDRVRTYTISAAEQCDILTLPFIYPPTTL-EFLLKNWDHNCQIVFADETCGSENSL 178
               ++R +   I AAEQ     +P I PP  L E   + ++   ++ F  E      +L
Sbjct: 121 AIKKLERWQKIAIEAAEQSGRNIVPEIKPPKNLKEKCAEAYEEALKLNFHPEASPLSANL 180

Query: 179 EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238
                     N+ I+IGPEGG+  +E + L    F TP+ LGPRILR++TA + A++++Q
Sbjct: 181 PIP-----AGNIVIIIGPEGGFSEKEIQLLKEKGF-TPVLLGPRILRTETAPLYALSILQ 234

Query: 239 AICGD 243
           A+  D
Sbjct: 235 ALLED 239