RPSBLAST alignment of GI: 254781160 and protein with PDBid: 1vhk
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5 Length = 268
Score = 158 bits (399), Expect = 1e-39
Identities = 61/257 (23%), Positives = 107/257 (41%), Gaps = 20/257 (7%)
Query: 7 LKRLFVDF---PLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV-- 61
L+R F++ + +G++ H++ +V+RM EGD I+ + E ++ V
Sbjct: 3 LQRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSK 62
Query: 62 GKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTH 121
K +E+ + ++ V K ++L+++IQK E+G A P +
Sbjct: 63 DKVSCLVIEWTNENRELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKL 122
Query: 122 YNM------DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSE 175
+ +R AAEQ +P + + + LL+ + V A E +
Sbjct: 123 DDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQ 182
Query: 176 NSLEKLHAIAHIP----NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231
+ AI ++ I+ GPEGG E E L V LGPRILR++TA +
Sbjct: 183 GEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDGV-TCGLGPRILRTETAPL 241
Query: 232 AAMALVQAI----CGDW 244
A++ + GD
Sbjct: 242 YALSAISYQTELLRGDQ 258