RPSBLAST alignment of GI: 254781160 and protein with PDBid: 1vhy

>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A Length = 257

 Score =  164 bits (415), Expect = 2e-41
 Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 17/252 (6%)

Query: 1   MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
           ++I     R++    L  +TQ   S D  +++A VLRM EG+ + LF+G +  + +KI  
Sbjct: 3   LRIP----RIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIE 58

Query: 61  VG--KSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ 118
                     +  +   +     +       +  R+++ IQKSVE+G+  I P+ +    
Sbjct: 59  SNKKSVKVEILGRELADKESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCG 118

Query: 119 ------NTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETC 172
                      + + +   I+A EQC    +P I P   L+      D   ++       
Sbjct: 119 VKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAH 178

Query: 173 GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232
            S  +L  +        V +LIG EGG  ++E        F T + LG R+LR++TA++A
Sbjct: 179 YSIKTLPTI----PAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLA 233

Query: 233 AMALVQAICGDW 244
           A++ +Q   GD 
Sbjct: 234 AISALQICFGDL 245