BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498
methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(245 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 245
Score = 517 bits (1332), Expect = e-149, Method: Compositional matrix adjust.
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY
Sbjct: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
Query: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT
Sbjct: 61 VGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT 120
Query: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK
Sbjct: 121 HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEK 180
Query: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI
Sbjct: 181 LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
Query: 241 CGDWY 245
CGDWY
Sbjct: 241 CGDWY 245
>gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 435
Score = 27.7 bits (60), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 111 PVITRYTQNTHYNMD-RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFAD 169
P +R T T ++++ + R + A CD L + P + + + W+ VF
Sbjct: 3 PRYSRTTMTTLWSLETKFRIWFEIEAHACDALAKLGVIPEKSSKNI---WEKGRNAVFNV 59
Query: 170 ETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
+ +S+ K IA + ++A +IGP+ +
Sbjct: 60 DRIMELDSIIKHDVIAFLTHLAEIIGPDARF 90
>gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 432
Score = 27.3 bits (59), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 154 FLLKNWDHNC--QIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSL 211
+L+ W + VFAD + N + K+ + +P + IGPE E + S
Sbjct: 374 MILEGWKQSTAGMRVFADLPIQARNYIRKIEEVLEVPVALLSIGPE-----RENTLIMSN 428
Query: 212 PF 213
PF
Sbjct: 429 PF 430
>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
psy62]
Length = 421
Score = 25.4 bits (54), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 149 PTTLEFLLKNWDHNCQIVFADET 171
PTT F+ N D N I+ D+T
Sbjct: 158 PTTTGFISNNLDKNATIITPDKT 180
>gi|254780595|ref|YP_003065008.1| nucleoside-diphosphate-sugar epimerase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 289
Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-----KSIRFKVEYQSRSQTKQ 79
S D Y ++ HV + + ++ ++G+W+ + S+V + RF E + + TK+
Sbjct: 86 SKDFYKFMPHVKWIGYLSSTSIYGNREGQWVDEHSFVHPISCVATQRFNAEKEWLAITKK 145
Query: 80 SDVQ 83
+++
Sbjct: 146 LNIK 149
>gi|254780699|ref|YP_003065112.1| hypothetical protein CLIBASIA_02930 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 97
Score = 24.3 bits (51), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQN 119
D Q+I + +K +R D I+ ++ AIR V+ T+N
Sbjct: 4 DNQFIENILKEDREDNNIKSLAQLQRIAIRTVLANRTKN 42
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 23.9 bits (50), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 145 FIYPPTTLEFLLKNWD 160
+IY P+T +FLL W+
Sbjct: 200 YIYAPSTRDFLLTYWN 215
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,287
Number of Sequences: 1233
Number of extensions: 6506
Number of successful extensions: 16
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 245
length of database: 328,796
effective HSP length: 72
effective length of query: 173
effective length of database: 240,020
effective search space: 41523460
effective search space used: 41523460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)